Wall clock time and date at job start Sun Mar 29 2020 22:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39926 * 120.46552 * 2 1 4 4 N 1.31701 * 119.82874 * 180.02562 * 3 2 1 5 5 C 1.33468 * 120.83640 * 0.02562 * 4 3 2 6 6 S 1.71198 * 119.51602 * 179.97438 * 5 4 3 7 7 N 1.34617 * 120.96992 * 359.97438 * 5 4 3 8 8 C 1.46496 * 119.94044 * 179.97438 * 7 5 4 9 9 N 1.46503 * 109.47650 * 285.00588 * 8 7 5 10 10 C 1.46495 * 119.99943 * 89.99422 * 9 8 7 11 11 C 1.36940 * 119.99518 * 269.72548 * 9 8 7 12 12 H 1.08004 * 119.99689 * 332.99889 * 11 9 8 13 13 C 1.38807 * 119.99917 * 153.00477 * 11 9 8 14 14 N 1.31625 * 119.99807 * 345.76163 * 13 11 9 15 15 Si 1.86798 * 120.00061 * 165.76536 * 13 11 9 16 16 H 1.48492 * 109.47336 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47128 * 119.99696 * 15 13 11 18 18 H 1.48500 * 109.47093 * 239.99463 * 15 13 11 19 19 C 1.35939 * 120.12180 * 0.28207 * 7 5 4 20 20 H 1.09004 * 109.47004 * 90.00186 * 1 2 3 21 21 H 1.08998 * 109.46924 * 209.99816 * 1 2 3 22 22 H 1.08998 * 109.46640 * 330.00136 * 1 2 3 23 23 H 1.08000 * 120.08119 * 0.03844 * 3 2 1 24 24 H 1.09004 * 109.47242 * 164.99643 * 8 7 5 25 25 H 1.09003 * 109.46703 * 45.00233 * 8 7 5 26 26 H 1.08998 * 109.47053 * 269.99794 * 10 9 8 27 27 H 1.08999 * 109.46922 * 29.99852 * 10 9 8 28 28 H 1.09001 * 109.47060 * 149.99742 * 10 9 8 29 29 H 0.96996 * 119.99620 * 180.02562 * 14 13 11 30 30 H 1.08002 * 120.41347 * 179.72449 * 19 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2165 1.2061 0.0000 4 7 3.5334 1.1914 -0.0005 5 6 4.2048 0.0379 -0.0015 6 16 5.9166 0.0583 -0.0028 7 7 3.5556 -1.1414 -0.0016 8 6 4.3151 -2.3941 -0.0033 9 7 4.8726 -2.6255 -1.3382 10 6 6.1996 -2.1059 -1.6779 11 6 4.1556 -3.3322 -2.2665 12 1 3.4329 -4.0675 -1.9450 13 6 4.3578 -3.1035 -3.6206 14 7 5.0155 -2.0342 -4.0164 15 14 3.6965 -4.3131 -4.8811 16 1 3.0001 -5.4237 -4.1835 17 1 2.7419 -3.6175 -5.7813 18 1 4.8222 -4.8598 -5.6806 19 6 2.1966 -1.1720 -0.0063 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3632 0.8900 0.5138 23 1 1.6854 2.1465 0.0006 24 1 3.6550 -3.2196 0.2630 25 1 5.1257 -2.3285 0.7226 26 1 6.1017 -1.1025 -2.0921 27 1 6.8164 -2.0699 -0.7800 28 1 6.6678 -2.7590 -2.4144 29 1 5.1565 -1.8742 -4.9626 30 1 1.6710 -2.1155 -0.0109 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131980935.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:11 Heat of formation + Delta-G solvation = 62.197015 kcal Electronic energy + Delta-G solvation = -15282.287327 eV Core-core repulsion = 12818.568478 eV Total energy + Delta-G solvation = -2463.718849 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.48787 -38.12079 -35.90089 -34.91535 -33.12374 -28.83711 -28.55385 -27.95044 -25.80656 -24.47744 -23.09811 -19.58918 -19.30161 -18.70818 -17.72438 -17.24620 -16.37303 -15.98269 -15.48740 -15.13239 -14.89141 -14.17737 -13.81599 -13.74576 -13.43014 -13.07148 -12.98290 -12.82978 -12.45036 -12.35346 -12.21633 -12.02582 -11.86585 -11.05421 -10.93213 -10.70947 -9.25415 -8.58473 -8.18657 -7.99002 -5.60752 -0.63723 -0.07516 1.07165 1.41722 1.45690 1.56231 1.70059 2.24110 2.40524 3.14636 3.21228 3.50062 3.53869 3.61512 3.97385 4.10731 4.35884 4.46946 4.71177 4.97774 5.05260 5.09928 5.22768 5.30480 5.32902 5.54236 5.60296 5.89628 6.10893 6.57354 6.89012 7.55823 8.07642 9.01419 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.022603 B = 0.010286 C = 0.008082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.462244 B = 2721.402237 C = 3463.484375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.204 4.204 3 C 0.208 3.792 4 N -0.531 5.531 5 C 0.451 3.549 6 S -0.706 6.706 7 N -0.436 5.436 8 C 0.309 3.691 9 N -0.570 5.570 10 C 0.193 3.807 11 C -0.292 4.292 12 H 0.099 0.901 13 C -0.040 4.040 14 N -0.923 5.923 15 Si 0.979 3.021 16 H -0.248 1.248 17 H -0.291 1.291 18 H -0.297 1.297 19 C 0.159 3.841 20 H 0.079 0.921 21 H 0.093 0.907 22 H 0.097 0.903 23 H 0.218 0.782 24 H 0.135 0.865 25 H 0.089 0.911 26 H 0.014 0.986 27 H 0.028 0.972 28 H 0.003 0.997 29 H 0.251 0.749 30 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.404 -0.905 8.744 18.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.215 4.215 3 C 0.028 3.972 4 N -0.248 5.248 5 C 0.093 3.907 6 S -0.565 6.565 7 N -0.124 5.124 8 C 0.101 3.899 9 N -0.287 5.287 10 C 0.048 3.952 11 C -0.421 4.421 12 H 0.117 0.883 13 C -0.238 4.238 14 N -0.565 5.565 15 Si 0.806 3.194 16 H -0.171 1.171 17 H -0.218 1.218 18 H -0.224 1.224 19 C 0.014 3.986 20 H 0.098 0.902 21 H 0.112 0.888 22 H 0.115 0.885 23 H 0.234 0.766 24 H 0.153 0.847 25 H 0.107 0.893 26 H 0.032 0.968 27 H 0.046 0.954 28 H 0.021 0.979 29 H 0.060 0.940 30 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -14.246 -0.428 8.559 16.625 hybrid contribution -0.745 -0.626 -1.210 1.553 sum -14.991 -1.054 7.349 16.729 Atomic orbital electron populations 1.20685 0.84291 1.05690 1.03922 1.21125 1.01325 0.91482 1.07567 1.24765 0.88919 1.01267 0.82262 1.69886 1.11030 1.24759 1.19085 1.23102 0.97660 0.83298 0.86677 1.92797 0.95133 1.95196 1.73355 1.49045 1.07947 1.11004 1.44360 1.22828 0.94974 0.82403 0.89685 1.44769 1.14809 1.58190 1.10952 1.20753 0.84045 0.95736 0.94706 1.19815 1.21530 1.14361 0.86400 0.88300 1.26211 0.99500 0.97821 1.00289 1.70374 1.44301 1.26896 1.14915 0.85056 0.77233 0.78668 0.78474 1.17094 1.21833 1.22424 1.23871 0.82827 1.03578 0.88336 0.90199 0.88820 0.88468 0.76566 0.84746 0.89319 0.96757 0.95353 0.97879 0.94016 0.76286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.77 10.04 71.24 0.71 -0.05 16 2 C -0.20 -3.99 5.87 -19.98 -0.12 -4.11 16 3 C 0.21 5.20 11.00 85.12 0.94 6.14 16 4 N -0.53 -20.88 10.39 -197.56 -2.05 -22.93 16 5 C 0.45 20.19 7.61 179.51 1.37 21.55 16 6 S -0.71 -38.33 24.08 -56.49 -1.36 -39.69 16 7 N -0.44 -15.85 2.83 -539.31 -1.53 -17.38 16 8 C 0.31 11.67 5.82 170.96 1.00 12.66 16 9 N -0.57 -27.92 3.10 -738.77 -2.29 -30.21 16 10 C 0.19 10.78 7.01 127.77 0.90 11.68 16 11 C -0.29 -14.45 9.59 84.03 0.81 -13.64 16 12 H 0.10 4.30 7.87 -2.91 -0.02 4.27 16 13 C -0.04 -2.12 5.02 84.86 0.43 -1.69 16 14 N -0.92 -55.42 11.09 21.65 0.24 -55.18 16 15 Si 0.98 41.87 29.58 68.60 2.03 43.90 16 16 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 17 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 18 H -0.30 -13.24 7.11 99.48 0.71 -12.53 16 19 C 0.16 3.84 10.07 83.53 0.84 4.68 16 20 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 21 H 0.09 0.46 8.09 -2.39 -0.02 0.45 16 22 H 0.10 0.45 8.10 -2.39 -0.02 0.43 16 23 H 0.22 3.17 8.06 -2.91 -0.02 3.15 16 24 H 0.14 3.73 7.74 -2.38 -0.02 3.71 16 25 H 0.09 3.54 7.03 -2.39 -0.02 3.52 16 26 H 0.01 0.90 6.13 -2.42 -0.01 0.89 16 27 H 0.03 1.53 6.63 -2.39 -0.02 1.51 16 28 H 0.00 0.15 7.31 -2.39 -0.02 0.13 16 29 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 30 H 0.22 3.20 7.94 -2.91 -0.02 3.18 16 Total: -1.00 -84.49 265.78 3.04 -81.45 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: 1.14 Total: 2.82 kcal Atomic # 6 Polarization: 30.35 SS G_CDS: 6.86 Total: 37.22 kcal Atomic # 7 Polarization: -120.07 SS G_CDS: -5.63 Total: -125.70 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Atomic # 16 Polarization: -38.33 SS G_CDS: -1.36 Total: -39.69 kcal Total: -84.49 3.04 -81.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131980935.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.650 kcal (2) G-P(sol) polarization free energy of solvation -84.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds