Wall clock time and date at job start Sun Mar 29 2020 22:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35742 * 116.99788 * 2 1 4 4 C 1.39278 * 120.84683 * 0.02562 * 3 2 1 5 5 C 1.37952 * 119.08994 * 180.02562 * 4 3 2 6 6 N 1.31977 * 120.82756 * 359.97438 * 5 4 3 7 7 C 1.31947 * 121.85817 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.58440 * 180.02562 * 7 6 5 9 9 S 1.81404 * 109.47098 * 90.00156 * 8 7 6 10 10 C 1.81397 * 103.00143 * 179.97438 * 9 8 7 11 11 C 1.50695 * 109.47452 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99671 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00078 * 179.97438 * 11 10 9 14 14 N 1.31511 * 119.99866 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99788 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47282 * 59.99825 * 15 13 11 17 17 H 1.48494 * 109.46776 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.46906 * 299.99786 * 15 13 11 19 19 C 1.37986 * 120.82785 * 0.27722 * 7 6 5 20 20 H 1.09001 * 109.46863 * 300.00265 * 1 2 3 21 21 H 1.08997 * 109.46830 * 60.00449 * 1 2 3 22 22 H 1.08998 * 109.46763 * 179.97438 * 1 2 3 23 23 H 1.08005 * 120.45818 * 0.02562 * 4 3 2 24 24 H 1.08004 * 119.58328 * 180.02562 * 5 4 3 25 25 H 1.09002 * 109.47060 * 210.00105 * 8 7 6 26 26 H 1.09001 * 109.47380 * 330.00193 * 8 7 6 27 27 H 1.09007 * 109.46846 * 299.99983 * 10 9 8 28 28 H 1.09007 * 109.47453 * 59.99610 * 10 9 8 29 29 H 0.97009 * 119.99621 * 179.97438 * 14 13 11 30 30 H 1.07992 * 120.46215 * 179.71135 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3040 2.3886 0.0005 5 6 1.9676 3.5980 0.0000 6 7 3.2865 3.6458 -0.0005 7 6 4.0231 2.5510 -0.0001 8 6 5.5257 2.6652 -0.0001 9 16 6.1287 2.7118 1.7102 10 6 7.9260 2.8475 1.5057 11 6 8.5834 2.8973 2.8608 12 1 7.9803 2.8523 3.7555 13 6 9.9549 3.0004 2.9583 14 7 10.6893 3.0547 1.8687 15 14 10.7698 3.0614 4.6381 16 1 10.4489 1.8214 5.3893 17 1 12.2411 3.1726 4.4706 18 1 10.2672 4.2396 5.3896 19 6 3.4347 1.3029 -0.0047 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 0.2244 2.3566 0.0014 24 1 1.4007 4.5173 0.0008 25 1 5.9555 1.8051 -0.5136 26 1 5.8206 3.5800 -0.5143 27 1 8.2953 1.9825 0.9547 28 1 8.1612 3.7575 0.9536 29 1 11.6542 3.1276 1.9373 30 1 4.0432 0.4107 -0.0090 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000141905774.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:04 Heat of formation + Delta-G solvation = -13.140403 kcal Electronic energy + Delta-G solvation = -13816.250261 eV Core-core repulsion = 11316.971785 eV Total energy + Delta-G solvation = -2499.278476 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.63080 -38.38791 -33.11895 -32.69396 -31.52674 -28.59160 -28.29222 -26.89245 -23.48857 -23.08788 -21.66423 -18.14293 -17.06839 -16.45753 -16.06477 -15.72424 -15.33192 -14.93789 -14.62622 -14.17540 -13.71245 -13.35665 -12.94476 -12.54792 -12.44676 -12.17490 -11.83771 -11.73475 -11.34957 -10.82377 -10.73232 -10.14601 -9.62929 -9.43466 -8.97741 -8.91431 -8.73823 -8.58107 -6.64231 -6.16483 -4.20592 1.00226 1.35578 2.66755 2.94733 3.30985 3.33721 3.38297 3.86197 3.96071 4.33948 4.38673 4.54819 4.80022 4.84189 4.86614 5.15264 5.16206 5.20655 5.24101 5.48921 5.78561 5.82689 6.00119 6.08148 6.50924 7.07537 7.12501 7.14758 7.77808 8.03979 8.11208 8.80775 9.42136 10.94815 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.050143 B = 0.004328 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.266184 B = 6468.692959 C = 6641.313037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.311 6.311 3 C 0.166 3.834 4 C -0.271 4.271 5 C 0.139 3.861 6 N -0.495 5.495 7 C 0.195 3.805 8 C -0.049 4.049 9 S -0.283 6.283 10 C 0.089 3.911 11 C -0.512 4.512 12 H 0.067 0.933 13 C 0.066 3.934 14 N -0.893 5.893 15 Si 0.907 3.093 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.274 1.274 19 C -0.189 4.189 20 H 0.058 0.942 21 H 0.056 0.944 22 H 0.102 0.898 23 H 0.136 0.864 24 H 0.158 0.842 25 H 0.092 0.908 26 H 0.096 0.904 27 H 0.037 0.963 28 H 0.038 0.962 29 H 0.266 0.734 30 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.982 -3.715 -5.880 20.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.222 6.222 3 C 0.113 3.887 4 C -0.293 4.293 5 C -0.019 4.019 6 N -0.208 5.208 7 C 0.058 3.942 8 C -0.197 4.197 9 S -0.055 6.055 10 C -0.058 4.058 11 C -0.552 4.552 12 H 0.085 0.915 13 C -0.138 4.138 14 N -0.531 5.531 15 Si 0.734 3.266 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.212 4.212 20 H 0.076 0.924 21 H 0.075 0.925 22 H 0.120 0.880 23 H 0.154 0.846 24 H 0.175 0.825 25 H 0.110 0.890 26 H 0.114 0.886 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -18.865 -3.169 -5.027 19.779 hybrid contribution 0.458 -0.607 -0.298 0.817 sum -18.408 -3.776 -5.325 19.531 Atomic orbital electron populations 1.23106 0.78044 1.04159 1.01556 1.86075 1.21672 1.26481 1.88016 1.19260 0.92277 0.84457 0.92698 1.22148 1.01224 0.93378 1.12517 1.22529 0.90018 0.96898 0.92464 1.67545 1.06746 1.31864 1.14650 1.20400 0.95012 0.87485 0.91269 1.22120 0.91059 1.05847 1.00722 1.86855 1.14297 1.97565 1.06802 1.21102 0.83241 1.00166 1.01306 1.20627 0.91429 1.52038 0.91064 0.91522 1.24954 0.96743 0.94660 0.97443 1.69947 1.06010 1.49382 1.27796 0.86404 0.77935 0.78964 0.83305 1.19907 1.21061 1.19892 1.21272 0.91906 0.99861 1.08132 0.92373 0.92489 0.88013 0.84609 0.82526 0.89004 0.88592 0.94465 0.94398 0.92447 0.83796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.84 101.05 0.99 1.18 16 2 O -0.31 -3.68 10.51 -18.93 -0.20 -3.88 16 3 C 0.17 2.21 6.74 -38.82 -0.26 1.95 16 4 C -0.27 -3.10 9.11 -39.30 -0.36 -3.46 16 5 C 0.14 1.78 11.17 -17.59 -0.20 1.58 16 6 N -0.50 -8.18 10.27 -9.55 -0.10 -8.28 16 7 C 0.20 3.28 6.04 -82.63 -0.50 2.78 16 8 C -0.05 -0.90 6.23 36.01 0.22 -0.67 16 9 S -0.28 -6.42 21.64 -107.50 -2.33 -8.74 16 10 C 0.09 2.34 5.70 36.00 0.21 2.55 16 11 C -0.51 -14.68 9.13 -34.44 -0.31 -14.99 16 12 H 0.07 1.91 7.71 -52.49 -0.40 1.51 16 13 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 14 N -0.89 -26.19 13.29 55.43 0.74 -25.46 16 15 Si 0.91 21.61 29.54 -169.99 -5.02 16.59 16 16 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 19 C -0.19 -2.87 9.70 -39.30 -0.38 -3.25 16 20 H 0.06 0.36 7.71 -51.93 -0.40 -0.04 16 21 H 0.06 0.33 7.71 -51.93 -0.40 -0.07 16 22 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.14 1.09 6.47 -52.48 -0.34 0.75 16 24 H 0.16 1.48 8.06 -52.48 -0.42 1.06 16 25 H 0.09 1.51 8.07 -51.92 -0.42 1.09 16 26 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 27 H 0.04 1.00 8.14 -51.92 -0.42 0.58 16 28 H 0.04 1.04 8.14 -51.92 -0.42 0.62 16 29 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.14 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 280.34 15.07 4.22 4.22 Total: -1.00 -31.89 280.34 -7.00 -38.89 By element: Atomic # 1 Polarization: 0.85 SS G_CDS: -3.64 Total: -2.79 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -0.68 Total: -10.56 kcal Atomic # 7 Polarization: -34.37 SS G_CDS: 0.64 Total: -33.73 kcal Atomic # 8 Polarization: -3.68 SS G_CDS: -0.20 Total: -3.88 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -6.42 SS G_CDS: -2.33 Total: -8.74 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.89 -7.00 -38.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000141905774.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.752 kcal (2) G-P(sol) polarization free energy of solvation -31.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds