Wall clock time and date at job start Sun Mar 29 2020 22:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35742 * 116.99788 * 2 1 4 4 C 1.39278 * 120.84683 * 0.02562 * 3 2 1 5 5 C 1.37952 * 119.08994 * 180.02562 * 4 3 2 6 6 N 1.31977 * 120.82756 * 359.97438 * 5 4 3 7 7 C 1.31947 * 121.85817 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.58440 * 180.02562 * 7 6 5 9 9 S 1.81404 * 109.47098 * 90.00156 * 8 7 6 10 10 C 1.81397 * 103.00143 * 179.97438 * 9 8 7 11 11 C 1.50695 * 109.47452 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99671 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00078 * 179.97438 * 11 10 9 14 14 N 1.31511 * 119.99866 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99788 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47282 * 59.99825 * 15 13 11 17 17 H 1.48494 * 109.46776 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.46906 * 299.99786 * 15 13 11 19 19 C 1.37986 * 120.82785 * 0.27722 * 7 6 5 20 20 H 1.09001 * 109.46863 * 300.00265 * 1 2 3 21 21 H 1.08997 * 109.46830 * 60.00449 * 1 2 3 22 22 H 1.08998 * 109.46763 * 179.97438 * 1 2 3 23 23 H 1.08005 * 120.45818 * 0.02562 * 4 3 2 24 24 H 1.08004 * 119.58328 * 180.02562 * 5 4 3 25 25 H 1.09002 * 109.47060 * 210.00105 * 8 7 6 26 26 H 1.09001 * 109.47380 * 330.00193 * 8 7 6 27 27 H 1.09007 * 109.46846 * 299.99983 * 10 9 8 28 28 H 1.09007 * 109.47453 * 59.99610 * 10 9 8 29 29 H 0.97009 * 119.99621 * 179.97438 * 14 13 11 30 30 H 1.07992 * 120.46215 * 179.71135 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3040 2.3886 0.0005 5 6 1.9676 3.5980 0.0000 6 7 3.2865 3.6458 -0.0005 7 6 4.0231 2.5510 -0.0001 8 6 5.5257 2.6652 -0.0001 9 16 6.1287 2.7118 1.7102 10 6 7.9260 2.8475 1.5057 11 6 8.5834 2.8973 2.8608 12 1 7.9803 2.8523 3.7555 13 6 9.9549 3.0004 2.9583 14 7 10.6893 3.0547 1.8687 15 14 10.7698 3.0614 4.6381 16 1 10.4489 1.8214 5.3893 17 1 12.2411 3.1726 4.4706 18 1 10.2672 4.2396 5.3896 19 6 3.4347 1.3029 -0.0047 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 0.2244 2.3566 0.0014 24 1 1.4007 4.5173 0.0008 25 1 5.9555 1.8051 -0.5136 26 1 5.8206 3.5800 -0.5143 27 1 8.2953 1.9825 0.9547 28 1 8.1612 3.7575 0.9536 29 1 11.6542 3.1276 1.9373 30 1 4.0432 0.4107 -0.0090 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000141905774.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:04 Heat of formation + Delta-G solvation = -33.542034 kcal Electronic energy + Delta-G solvation = -13817.134942 eV Core-core repulsion = 11316.971785 eV Total energy + Delta-G solvation = -2500.163157 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.63183 -39.32644 -35.29304 -33.86354 -32.53902 -30.69559 -29.33874 -27.82553 -25.21060 -24.50326 -22.77643 -19.15542 -18.56529 -18.06850 -17.20119 -16.84994 -16.71391 -16.40785 -15.92981 -15.32267 -14.92572 -14.69272 -14.56286 -14.32928 -14.04053 -13.64499 -13.16376 -12.70851 -12.61938 -12.48042 -12.20155 -12.08676 -11.61375 -10.82024 -10.73864 -10.53975 -10.02272 -9.89657 -8.49630 -8.32838 -6.46445 -0.15400 0.31065 1.10598 1.40878 1.44256 1.53175 1.96701 2.13803 2.37617 2.84899 3.01631 3.19250 3.65482 3.82420 4.05013 4.10872 4.31463 4.36879 4.39019 4.50427 4.70959 4.78278 4.83713 4.94213 4.94756 5.02695 5.48627 5.56837 5.88217 6.21537 6.60158 7.02420 7.21358 8.79059 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.050143 B = 0.004328 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.266184 B = 6468.692959 C = 6641.313037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.327 6.327 3 C 0.164 3.836 4 C -0.251 4.251 5 C 0.132 3.868 6 N -0.527 5.527 7 C 0.171 3.829 8 C -0.034 4.034 9 S -0.295 6.295 10 C 0.092 3.908 11 C -0.539 4.539 12 H 0.061 0.939 13 C 0.016 3.984 14 N -0.925 5.925 15 Si 0.978 3.022 16 H -0.266 1.266 17 H -0.275 1.275 18 H -0.267 1.267 19 C -0.202 4.202 20 H 0.070 0.930 21 H 0.074 0.926 22 H 0.122 0.878 23 H 0.178 0.822 24 H 0.192 0.808 25 H 0.104 0.896 26 H 0.092 0.908 27 H 0.020 0.980 28 H 0.016 0.984 29 H 0.271 0.729 30 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.233 -3.961 -5.416 22.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.239 6.239 3 C 0.110 3.890 4 C -0.273 4.273 5 C -0.025 4.025 6 N -0.241 5.241 7 C 0.035 3.965 8 C -0.182 4.182 9 S -0.068 6.068 10 C -0.055 4.055 11 C -0.578 4.578 12 H 0.079 0.921 13 C -0.185 4.185 14 N -0.563 5.563 15 Si 0.801 3.199 16 H -0.190 1.190 17 H -0.199 1.199 18 H -0.192 1.192 19 C -0.225 4.225 20 H 0.088 0.912 21 H 0.093 0.907 22 H 0.140 0.860 23 H 0.195 0.805 24 H 0.209 0.791 25 H 0.122 0.878 26 H 0.110 0.890 27 H 0.038 0.962 28 H 0.034 0.966 29 H 0.080 0.920 30 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -21.133 -3.423 -4.566 21.890 hybrid contribution 0.919 -0.579 -0.548 1.216 sum -20.214 -4.002 -5.114 21.232 Atomic orbital electron populations 1.23499 0.75380 1.06152 1.02958 1.86069 1.24388 1.25800 1.87622 1.19341 0.91814 0.85786 0.92072 1.22544 1.03146 0.91948 1.09628 1.23153 0.88935 0.98984 0.91422 1.67474 1.08736 1.32078 1.15843 1.20088 0.93883 0.88495 0.94032 1.22092 0.92873 1.06266 0.96999 1.86649 1.11047 1.97548 1.11524 1.20790 0.86374 0.98193 1.00141 1.20944 0.92309 1.52885 0.91633 0.92069 1.25914 0.97226 0.93698 1.01671 1.70053 1.06515 1.49642 1.30107 0.85313 0.77135 0.79313 0.78189 1.19043 1.19930 1.19188 1.21299 0.93408 0.99147 1.08642 0.91151 0.90732 0.85996 0.80516 0.79135 0.87752 0.88971 0.96169 0.96586 0.91990 0.83968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.84 113.37 1.12 1.26 16 2 O -0.33 -6.95 10.51 -90.66 -0.95 -7.90 16 3 C 0.16 4.01 6.74 22.76 0.15 4.16 16 4 C -0.25 -4.89 9.11 22.45 0.20 -4.68 16 5 C 0.13 3.05 11.17 84.60 0.95 3.99 16 6 N -0.53 -16.98 10.27 -184.12 -1.89 -18.87 16 7 C 0.17 5.75 6.04 42.48 0.26 6.01 16 8 C -0.03 -1.28 6.23 71.24 0.44 -0.83 16 9 S -0.30 -13.81 21.64 -56.49 -1.22 -15.03 16 10 C 0.09 5.10 5.70 71.23 0.41 5.51 16 11 C -0.54 -31.72 9.13 25.60 0.23 -31.48 16 12 H 0.06 3.59 7.71 -2.91 -0.02 3.56 16 13 C 0.02 0.91 5.46 84.66 0.46 1.37 16 14 N -0.92 -55.20 13.29 21.45 0.28 -54.92 16 15 Si 0.98 44.40 29.54 68.60 2.03 46.43 16 16 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 17 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 18 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 19 C -0.20 -6.03 9.70 22.45 0.22 -5.81 16 20 H 0.07 0.58 7.71 -2.39 -0.02 0.56 16 21 H 0.07 0.53 7.71 -2.39 -0.02 0.52 16 22 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 23 H 0.18 1.90 6.47 -2.91 -0.02 1.88 16 24 H 0.19 2.90 8.06 -2.91 -0.02 2.88 16 25 H 0.10 3.54 8.07 -2.39 -0.02 3.53 16 26 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 27 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.27 15.07 8.31 -92.70 -0.77 14.30 16 30 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -70.29 280.34 3.81 -66.48 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: 1.13 Total: 4.33 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: 4.44 Total: -20.51 kcal Atomic # 7 Polarization: -72.18 SS G_CDS: -1.61 Total: -73.79 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: -0.95 Total: -7.90 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 16 Polarization: -13.81 SS G_CDS: -1.22 Total: -15.03 kcal Total: -70.29 3.81 -66.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000141905774.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.936 kcal (2) G-P(sol) polarization free energy of solvation -70.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds