Wall clock time and date at job start Sun Mar 29 2020 22:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47169 * 2 1 4 4 H 1.09004 * 109.47268 * 54.99785 * 3 2 1 5 5 N 1.46505 * 109.47037 * 294.99952 * 3 2 1 6 6 C 1.36932 * 119.99811 * 84.99994 * 5 3 2 7 7 H 1.08001 * 120.00681 * 0.02562 * 6 5 3 8 8 C 1.38813 * 120.00044 * 180.02562 * 6 5 3 9 9 N 1.31616 * 120.00403 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99875 * 0.02562 * 8 6 5 11 11 H 1.48495 * 109.47128 * 89.99860 * 10 8 6 12 12 H 1.48497 * 109.47238 * 210.00229 * 10 8 6 13 13 H 1.48505 * 109.47249 * 330.00036 * 10 8 6 14 14 C 1.50699 * 109.47180 * 175.00144 * 3 2 1 15 15 C 1.38265 * 119.98996 * 259.99855 * 14 3 2 16 16 C 1.38225 * 120.02460 * 179.97438 * 15 14 3 17 17 C 1.38234 * 120.01137 * 0.02562 * 16 15 14 18 18 C 1.38325 * 119.98838 * 359.97438 * 17 16 15 19 19 Cl 1.73601 * 120.01311 * 180.02562 * 18 17 16 20 20 C 1.38186 * 119.99683 * 79.97442 * 14 3 2 21 21 H 1.09001 * 109.47140 * 60.00099 * 1 2 3 22 22 H 1.09000 * 109.47184 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46779 * 300.00363 * 1 2 3 24 24 H 1.08996 * 109.47147 * 239.99478 * 2 1 3 25 25 H 1.09000 * 109.46640 * 119.99728 * 2 1 3 26 26 H 0.96996 * 119.99995 * 264.99925 * 5 3 2 27 27 H 0.97001 * 119.99867 * 180.02562 * 9 8 6 28 28 H 1.07994 * 119.98951 * 359.72542 * 15 14 3 29 29 H 1.08002 * 119.99215 * 179.97438 * 16 15 14 30 30 H 1.07997 * 120.00461 * 179.97438 * 17 16 15 31 31 H 1.08001 * 120.00337 * 0.02562 * 20 14 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6525 2.0975 -1.2519 6 6 0.4157 2.6734 -1.3688 7 1 -0.2740 2.6453 -0.5382 8 6 0.0482 3.2936 -2.5551 9 7 -1.1403 3.8476 -2.6674 10 14 1.2407 3.3417 -3.9922 11 1 1.0367 2.1433 -4.8450 12 1 0.9993 4.5675 -4.7949 13 1 2.6342 3.3527 -3.4790 14 6 3.5420 1.4443 0.1238 15 6 4.1341 1.6873 1.3494 16 6 5.5116 1.6886 1.4638 17 6 6.2980 1.4474 0.3528 18 6 5.7061 1.2043 -0.8735 19 17 6.6930 0.9007 -2.2691 20 6 4.3270 1.2026 -0.9874 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 2.2720 2.1231 -1.9978 27 1 -1.3972 4.2806 -3.4966 28 1 3.5202 1.8801 2.2167 29 1 5.9736 1.8788 2.4213 30 1 7.3742 1.4489 0.4423 31 1 3.8643 1.0129 -1.9447 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182584499.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:19 Heat of formation + Delta-G solvation = 4.187083 kcal Electronic energy + Delta-G solvation = -14786.599926 eV Core-core repulsion = 12286.029120 eV Total energy + Delta-G solvation = -2500.570806 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.59169 -37.94374 -37.15844 -34.40287 -32.26923 -31.81180 -31.60641 -27.45815 -24.71398 -23.58416 -23.05693 -21.35143 -19.81971 -17.87641 -17.02837 -16.44852 -16.13643 -15.67801 -15.16465 -14.95857 -14.74184 -14.46226 -14.37428 -13.50863 -13.35183 -12.97150 -12.94183 -12.47751 -12.40834 -12.21988 -12.14315 -12.08363 -11.79263 -11.52891 -11.43297 -10.99195 -9.84532 -9.62720 -9.29356 -7.99292 -5.30547 0.21651 0.33496 1.14320 1.36119 1.36504 1.43239 2.48164 2.68795 3.32589 3.60330 3.72768 3.91157 4.15765 4.30859 4.37625 4.45693 4.51790 4.68491 4.71562 4.95802 4.98963 5.11544 5.18891 5.28407 5.38554 5.41892 5.64574 5.70631 5.83789 5.88839 6.24590 7.09466 7.85107 8.03108 9.21780 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.021395 B = 0.008674 C = 0.006944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.422372 B = 3227.345413 C = 4031.393909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.122 4.122 3 C 0.211 3.789 4 H 0.063 0.937 5 N -0.749 5.749 6 C -0.208 4.208 7 H 0.071 0.929 8 C -0.062 4.062 9 N -0.982 5.982 10 Si 0.935 3.065 11 H -0.281 1.281 12 H -0.298 1.298 13 H -0.259 1.259 14 C -0.075 4.075 15 C -0.112 4.112 16 C -0.096 4.096 17 C -0.118 4.118 18 C -0.044 4.044 19 Cl -0.079 7.079 20 C -0.123 4.123 21 H 0.045 0.955 22 H 0.055 0.945 23 H 0.045 0.955 24 H 0.049 0.951 25 H 0.077 0.923 26 H 0.362 0.638 27 H 0.255 0.745 28 H 0.148 0.852 29 H 0.168 0.832 30 H 0.155 0.845 31 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.397 -7.643 8.392 19.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.162 4.162 3 C 0.104 3.896 4 H 0.081 0.919 5 N -0.393 5.393 6 C -0.339 4.339 7 H 0.089 0.911 8 C -0.253 4.253 9 N -0.633 5.633 10 Si 0.764 3.236 11 H -0.207 1.207 12 H -0.225 1.225 13 H -0.184 1.184 14 C -0.076 4.076 15 C -0.130 4.130 16 C -0.114 4.114 17 C -0.136 4.136 18 C -0.070 4.070 19 Cl -0.050 7.050 20 C -0.142 4.142 21 H 0.064 0.936 22 H 0.074 0.926 23 H 0.064 0.936 24 H 0.068 0.932 25 H 0.095 0.905 26 H 0.196 0.804 27 H 0.064 0.936 28 H 0.166 0.834 29 H 0.186 0.814 30 H 0.172 0.828 31 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 16.279 -7.598 8.324 19.800 hybrid contribution 0.110 0.292 -1.660 1.689 sum 16.389 -7.306 6.665 19.142 Atomic orbital electron populations 1.21727 0.96174 1.00574 1.01751 1.21994 0.96070 0.96775 1.01335 1.19427 0.88369 0.93012 0.88805 0.91890 1.42935 1.15290 1.67860 1.13187 1.19024 0.91036 1.25353 0.98503 0.91074 1.25298 0.98064 1.01482 1.00451 1.69842 1.21536 1.44639 1.27278 0.85693 0.80164 0.76966 0.80763 1.20741 1.22475 1.18446 1.20228 0.95616 0.98018 0.93776 1.21429 0.95947 0.98732 0.96907 1.21471 0.92740 0.97748 0.99419 1.21329 1.01756 1.00200 0.90326 1.21037 0.91076 1.05495 0.89422 1.98350 1.69960 1.94425 1.42286 1.20835 0.92111 1.01908 0.99334 0.93583 0.92566 0.93598 0.93229 0.90453 0.80420 0.93596 0.83445 0.81419 0.82769 0.87040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.20 9.18 71.98 0.66 -4.54 16 2 C -0.12 -4.00 5.59 30.60 0.17 -3.83 16 3 C 0.21 7.67 2.64 44.24 0.12 7.79 16 4 H 0.06 2.33 7.94 -2.38 -0.02 2.31 16 5 N -0.75 -34.19 4.82 -326.49 -1.57 -35.76 16 6 C -0.21 -11.43 8.23 84.03 0.69 -10.73 16 7 H 0.07 4.20 7.55 -2.91 -0.02 4.17 16 8 C -0.06 -3.61 5.50 84.86 0.47 -3.15 16 9 N -0.98 -62.51 13.97 21.65 0.30 -62.21 16 10 Si 0.94 46.29 27.74 68.60 1.90 48.19 16 11 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 12 H -0.30 -15.00 7.11 99.48 0.71 -14.30 16 13 H -0.26 -11.94 6.52 99.48 0.65 -11.29 16 14 C -0.08 -2.32 4.95 -19.87 -0.10 -2.42 16 15 C -0.11 -2.66 9.67 22.27 0.22 -2.44 16 16 C -0.10 -1.82 10.05 22.27 0.22 -1.60 16 17 C -0.12 -2.48 9.83 22.29 0.22 -2.26 16 18 C -0.04 -1.18 6.32 22.32 0.14 -1.04 16 19 Cl -0.08 -2.03 28.96 -2.72 -0.08 -2.10 16 20 C -0.12 -3.87 8.84 22.29 0.20 -3.68 16 21 H 0.05 2.05 5.99 -2.39 -0.01 2.03 16 22 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.05 1.67 8.14 -2.39 -0.02 1.66 16 25 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.36 16.47 3.93 -92.71 -0.36 16.10 16 27 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 28 H 0.15 2.88 8.04 -2.91 -0.02 2.86 16 29 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 30 H 0.15 2.42 8.06 -2.91 -0.02 2.39 16 31 H 0.11 3.86 6.92 -2.91 -0.02 3.84 16 Total: -1.00 -65.12 274.37 4.26 -60.86 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.70 Total: 18.92 kcal Atomic # 6 Polarization: -30.90 SS G_CDS: 3.00 Total: -27.90 kcal Atomic # 7 Polarization: -96.70 SS G_CDS: -1.27 Total: -97.97 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 1.90 Total: 48.19 kcal Atomic # 17 Polarization: -2.03 SS G_CDS: -0.08 Total: -2.10 kcal Total: -65.12 4.26 -60.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182584499.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.050 kcal (2) G-P(sol) polarization free energy of solvation -65.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds