Wall clock time and date at job start Sun Mar 29 2020 22:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 H 1.09004 * 109.46812 * 304.99956 * 3 2 1 5 5 N 1.46498 * 109.47036 * 65.00021 * 3 2 1 6 6 C 1.36943 * 119.99752 * 274.72222 * 5 3 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 3 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 3 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47159 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47290 * 120.00044 * 10 8 6 13 13 H 1.48503 * 109.47163 * 240.00049 * 10 8 6 14 14 C 1.50701 * 109.47247 * 185.00035 * 3 2 1 15 15 C 1.38263 * 119.98843 * 279.72519 * 14 3 2 16 16 C 1.38227 * 120.01997 * 179.76631 * 15 14 3 17 17 C 1.38236 * 120.01539 * 0.50847 * 16 15 14 18 18 C 1.38333 * 119.98423 * 359.74390 * 17 16 15 19 19 Cl 1.73596 * 120.01073 * 180.02562 * 18 17 16 20 20 C 1.38190 * 119.99474 * 99.99506 * 14 3 2 21 21 H 1.09000 * 109.47004 * 300.00349 * 1 2 3 22 22 H 1.08997 * 109.46461 * 60.00164 * 1 2 3 23 23 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47004 * 239.99651 * 2 1 3 25 25 H 1.09005 * 109.47038 * 120.00011 * 2 1 3 26 26 H 0.97001 * 120.00384 * 95.00578 * 5 3 2 27 27 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 28 28 H 1.08000 * 119.99373 * 359.97438 * 15 14 3 29 29 H 1.08004 * 119.99004 * 180.25048 * 16 15 14 30 30 H 1.07995 * 120.00700 * 179.72380 * 17 16 15 31 31 H 1.08003 * 120.00598 * 0.02562 * 20 14 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 7 1.6525 2.0974 1.2518 6 6 0.4178 2.6784 1.3668 7 1 -0.2719 2.6498 0.5362 8 6 0.0527 3.3040 2.5509 9 7 0.8936 3.3393 3.5630 10 14 -1.6317 4.0959 2.7081 11 1 -2.3821 3.9193 1.4389 12 1 -2.3795 3.4527 3.8182 13 1 -1.4730 5.5448 2.9923 14 6 3.5420 1.4443 -0.1238 15 6 4.3275 1.2086 0.9893 16 6 5.7051 1.2053 0.8755 17 6 6.2983 1.4481 -0.3492 18 6 5.5129 1.6891 -1.4622 19 17 6.2572 1.9933 -3.0007 20 6 4.1339 1.6870 -1.3487 21 1 -0.3633 0.5139 0.8900 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 2.2720 2.1232 1.9978 27 1 0.6383 3.7761 4.3906 28 1 3.8646 1.0237 1.9474 29 1 6.3181 1.0171 1.7446 30 1 7.3747 1.4499 -0.4371 31 1 3.5202 1.8758 -2.2172 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182584518.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:20 Heat of formation + Delta-G solvation = 16.298902 kcal Electronic energy + Delta-G solvation = -14650.482176 eV Core-core repulsion = 12150.436578 eV Total energy + Delta-G solvation = -2500.045598 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.28041 -36.58605 -35.66426 -32.51662 -30.74746 -30.47970 -29.43881 -25.75151 -23.20073 -22.30346 -21.80868 -19.70735 -17.52782 -16.51660 -15.37164 -15.17813 -14.47100 -13.87525 -13.83085 -13.52057 -13.34250 -12.99278 -12.66470 -11.90709 -11.74349 -11.27639 -11.18392 -10.97593 -10.91728 -10.88367 -10.66259 -10.35141 -10.18442 -9.99967 -9.54523 -8.99392 -8.61309 -8.35565 -7.01891 -5.81127 -3.09017 1.44386 1.54220 2.26918 3.40907 3.47104 3.48937 3.91922 4.55854 4.99527 5.07561 5.36066 5.46959 5.56679 5.61165 5.72848 5.84235 5.97362 5.99772 6.17581 6.28043 6.43422 6.46168 6.58191 6.64599 6.68394 6.82500 7.06950 7.12230 7.24879 7.67816 8.37021 9.48646 10.03423 10.39010 11.41606 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.031550 B = 0.005996 C = 0.005768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.267971 B = 4668.470902 C = 4853.308263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.130 4.130 3 C 0.210 3.790 4 H 0.058 0.942 5 N -0.719 5.719 6 C -0.234 4.234 7 H 0.075 0.925 8 C -0.013 4.013 9 N -0.932 5.932 10 Si 0.904 3.096 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.292 1.292 14 C -0.054 4.054 15 C -0.099 4.099 16 C -0.108 4.108 17 C -0.126 4.126 18 C -0.035 4.035 19 Cl -0.087 7.087 20 C -0.110 4.110 21 H 0.085 0.915 22 H 0.040 0.960 23 H 0.033 0.967 24 H 0.042 0.958 25 H 0.055 0.945 26 H 0.385 0.615 27 H 0.255 0.745 28 H 0.133 0.867 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.613 -5.540 -8.525 13.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C 0.100 3.900 4 H 0.076 0.924 5 N -0.361 5.361 6 C -0.365 4.365 7 H 0.092 0.908 8 C -0.209 4.209 9 N -0.580 5.580 10 Si 0.735 3.265 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C -0.055 4.055 15 C -0.118 4.118 16 C -0.127 4.127 17 C -0.145 4.145 18 C -0.061 4.061 19 Cl -0.058 7.058 20 C -0.129 4.129 21 H 0.104 0.896 22 H 0.060 0.940 23 H 0.052 0.948 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.220 0.780 27 H 0.065 0.935 28 H 0.151 0.849 29 H 0.146 0.854 30 H 0.144 0.856 31 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 8.488 -5.425 -8.675 13.294 hybrid contribution -0.580 0.546 0.278 0.844 sum 7.908 -4.878 -8.397 12.524 Atomic orbital electron populations 1.21798 0.95690 0.99675 1.03342 1.22133 0.96793 0.98172 0.99986 1.19283 0.86336 0.92662 0.91725 0.92434 1.42512 1.16912 1.65946 1.10738 1.19277 0.91665 1.27446 0.98110 0.90754 1.24735 0.98244 1.01480 0.96453 1.69665 1.35229 1.49008 1.04100 0.86156 0.83873 0.78958 0.77470 1.20483 1.21872 1.21893 1.20442 0.97638 0.95386 0.92038 1.21219 0.93204 0.98068 0.99282 1.21092 0.95029 0.99821 0.96720 1.20913 0.99604 1.02257 0.91712 1.20836 0.93134 1.05608 0.86546 1.98338 1.82792 1.94558 1.30097 1.20911 0.92264 1.01350 0.98389 0.89608 0.94041 0.94807 0.93917 0.92576 0.78000 0.93521 0.84903 0.85436 0.85639 0.85296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.18 37.16 0.34 -2.32 16 2 C -0.13 -2.30 5.59 -26.73 -0.15 -2.45 16 3 C 0.21 4.07 2.64 -69.08 -0.18 3.89 16 4 H 0.06 1.14 7.94 -51.93 -0.41 0.73 16 5 N -0.72 -17.12 5.01 -54.55 -0.27 -17.39 16 6 C -0.23 -6.15 7.76 -15.06 -0.12 -6.27 16 7 H 0.07 1.90 7.33 -52.49 -0.38 1.52 16 8 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 9 N -0.93 -27.32 13.06 55.49 0.72 -26.60 16 10 Si 0.90 21.87 29.55 -169.99 -5.02 16.85 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 14 C -0.05 -0.93 4.96 -104.63 -0.52 -1.45 16 15 C -0.10 -1.65 9.06 -39.58 -0.36 -2.00 16 16 C -0.11 -1.52 10.05 -39.59 -0.40 -1.92 16 17 C -0.13 -1.71 9.83 -39.55 -0.39 -2.10 16 18 C -0.03 -0.50 6.32 -39.50 -0.25 -0.75 16 19 Cl -0.09 -1.12 28.96 -51.86 -1.50 -2.62 16 20 C -0.11 -1.72 9.45 -39.55 -0.37 -2.10 16 21 H 0.09 1.81 6.01 -51.93 -0.31 1.50 16 22 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 23 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.38 9.69 6.05 -40.82 -0.25 9.45 16 27 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.13 2.31 6.90 -52.49 -0.36 1.95 16 29 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 30 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 31 H 0.13 1.86 8.04 -52.48 -0.42 1.44 16 LS Contribution 277.50 15.07 4.18 4.18 Total: -1.00 -28.16 277.50 -8.19 -36.36 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -3.81 Total: 7.16 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: -2.49 Total: -17.94 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: 0.45 Total: -43.99 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -1.50 Total: -2.62 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.16 -8.19 -36.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182584518.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.655 kcal (2) G-P(sol) polarization free energy of solvation -28.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds