Wall clock time and date at job start Sun Mar 29 2020 22:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 O 1.42903 * 109.46878 * 179.97438 * 9 7 2 11 11 C 1.35652 * 116.99750 * 179.97438 * 10 9 7 12 12 C 1.38633 * 120.13859 * 0.02562 * 11 10 9 13 13 C 1.38146 * 120.15955 * 180.02562 * 12 11 10 14 14 C 1.38413 * 120.43139 * 359.97438 * 13 12 11 15 15 C 1.38137 * 120.26978 * 0.04178 * 14 13 12 16 16 F 1.35103 * 120.07972 * 179.97438 * 15 14 13 17 17 C 1.39967 * 119.83796 * 359.68597 * 15 14 13 18 18 C 1.47387 * 120.21271 * 180.29120 * 17 15 14 19 19 N 1.34783 * 119.99854 * 90.27118 * 18 17 15 20 20 O 1.21610 * 120.00122 * 270.27339 * 18 17 15 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.08004 * 119.92365 * 0.02562 * 12 11 10 25 25 H 1.07990 * 119.78295 * 180.02562 * 13 12 11 26 26 H 1.07994 * 119.86437 * 180.02562 * 14 13 12 27 27 H 0.97002 * 119.99911 * 0.02562 * 19 18 17 28 28 H 0.96999 * 119.99391 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.6610 -4.8388 0.0011 12 6 0.2871 -5.0238 0.0011 13 6 -0.2415 -6.3001 0.0021 14 6 0.5930 -7.4044 0.0027 15 6 1.9646 -7.2408 0.0031 16 9 2.7755 -8.3214 0.0042 17 6 2.5122 -5.9527 -0.0038 18 6 3.9746 -5.7686 -0.0099 19 7 4.6381 -5.6832 -1.1800 20 8 4.5824 -5.6936 1.0407 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 -0.3717 -4.1679 0.0002 25 1 -1.3126 -6.4371 0.0017 26 1 0.1699 -8.3981 0.0031 27 1 4.1532 -5.7427 -2.0180 28 1 5.6004 -5.5617 -1.1839 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184746340.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:13 Heat of formation + Delta-G solvation = -105.554522 kcal Electronic energy + Delta-G solvation = -16475.032071 eV Core-core repulsion = 13405.533042 eV Total energy + Delta-G solvation = -3069.499029 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.88559 -39.97762 -38.41816 -36.69744 -33.40261 -33.03229 -30.83214 -29.63686 -27.67056 -24.02891 -23.55053 -21.52155 -20.59252 -18.19379 -17.41305 -17.05268 -16.64997 -16.13623 -15.60047 -15.51588 -15.00494 -14.71929 -14.62990 -13.97098 -13.70190 -13.58624 -12.55611 -12.22408 -11.98103 -11.63910 -11.24471 -11.10033 -11.06229 -10.35579 -10.31296 -9.85398 -9.45852 -9.41190 -8.78312 -8.65119 -7.88951 -6.34283 -4.38315 1.12448 1.49565 2.83576 3.19456 3.25197 3.30196 3.62801 3.71851 3.83399 4.25468 4.56321 4.95893 5.03665 5.06677 5.27406 5.40593 5.53849 5.97378 6.10864 6.35995 6.48957 6.68145 6.89708 6.96573 6.97075 7.50042 7.56629 7.80881 8.19585 8.47426 8.72071 9.27364 10.76830 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.031810 B = 0.006632 C = 0.005660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.009799 B = 4221.204005 C = 4946.210333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.063 3.937 3 Si 0.914 3.086 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.526 4.526 8 H 0.071 0.929 9 C 0.191 3.809 10 O -0.303 6.303 11 C 0.215 3.785 12 C -0.223 4.223 13 C -0.034 4.034 14 C -0.213 4.213 15 C 0.165 3.835 16 F -0.134 7.134 17 C -0.225 4.225 18 C 0.591 3.409 19 N -0.843 5.843 20 O -0.533 6.533 21 H 0.268 0.732 22 H 0.028 0.972 23 H 0.027 0.973 24 H 0.147 0.853 25 H 0.135 0.865 26 H 0.136 0.864 27 H 0.402 0.598 28 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.270 -11.919 -4.149 12.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.741 3.259 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.564 4.564 8 H 0.090 0.910 9 C 0.119 3.881 10 O -0.214 6.214 11 C 0.164 3.836 12 C -0.241 4.241 13 C -0.052 4.052 14 C -0.232 4.232 15 C 0.145 3.855 16 F -0.112 7.112 17 C -0.230 4.230 18 C 0.374 3.626 19 N -0.406 5.406 20 O -0.409 6.409 21 H 0.078 0.922 22 H 0.045 0.955 23 H 0.045 0.955 24 H 0.165 0.835 25 H 0.153 0.847 26 H 0.154 0.846 27 H 0.230 0.770 28 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 0.581 -11.699 -3.364 12.187 hybrid contribution 0.308 0.795 -0.435 0.957 sum 0.889 -10.905 -3.799 11.582 Atomic orbital electron populations 1.69932 1.06125 1.27817 1.49277 1.24913 0.95066 0.99552 0.94452 0.86221 0.79718 0.81553 0.78425 1.20232 1.20811 1.19405 1.20934 0.94359 0.88457 1.52659 0.91037 1.20840 0.88562 0.81370 0.97368 1.86141 1.39590 1.11396 1.84231 1.18833 0.90691 0.85706 0.88325 1.21523 0.94185 0.99224 1.09214 1.20887 0.99848 0.91000 0.93477 1.20783 0.90745 1.00521 1.11119 1.17189 0.87965 0.80993 0.99371 1.91498 1.73158 1.53020 1.93567 1.18928 0.93739 0.91413 1.18881 1.17684 0.86395 0.74627 0.83863 1.43717 1.11850 1.76667 1.08382 1.90815 1.69141 1.49254 1.31694 0.92192 0.95468 0.95482 0.83496 0.84679 0.84624 0.76969 0.76752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.97 13.29 55.43 0.74 -24.23 15 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 15 3 Si 0.91 20.90 29.54 -169.99 -5.02 15.88 15 4 H -0.28 -6.18 7.11 56.52 0.40 -5.77 15 5 H -0.28 -6.34 7.11 56.52 0.40 -5.93 15 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 7 C -0.53 -14.63 9.43 -34.44 -0.32 -14.95 15 8 H 0.07 2.00 7.81 -52.49 -0.41 1.59 15 9 C 0.19 4.82 4.49 36.01 0.16 4.98 15 10 O -0.30 -7.09 9.57 -18.66 -0.18 -7.27 15 11 C 0.22 4.23 6.70 -38.70 -0.26 3.97 15 12 C -0.22 -3.76 9.03 -39.47 -0.36 -4.11 15 13 C -0.03 -0.45 10.03 -39.55 -0.40 -0.85 15 14 C -0.21 -2.80 10.01 -39.55 -0.40 -3.20 15 15 C 0.16 2.59 7.29 -38.97 -0.28 2.31 15 16 F -0.13 -2.07 16.83 2.25 0.04 -2.04 15 17 C -0.22 -4.09 5.64 -104.79 -0.59 -4.69 15 18 C 0.59 11.17 6.70 -12.53 -0.08 11.08 15 19 N -0.84 -11.76 8.87 30.42 0.27 -11.49 15 20 O -0.53 -12.13 17.94 5.27 0.09 -12.04 15 21 H 0.27 7.03 8.31 -40.82 -0.34 6.69 15 22 H 0.03 0.71 7.66 -51.93 -0.40 0.31 15 23 H 0.03 0.69 7.66 -51.93 -0.40 0.29 15 24 H 0.15 2.54 6.29 -52.48 -0.33 2.21 15 25 H 0.14 1.33 8.06 -52.49 -0.42 0.91 15 26 H 0.14 1.39 8.06 -52.49 -0.42 0.96 15 27 H 0.40 4.53 8.81 -40.82 -0.36 4.17 15 28 H 0.40 4.77 8.93 -40.82 -0.36 4.41 15 LS Contribution 263.72 15.07 3.97 3.97 Total: -1.00 -31.99 263.72 -4.95 -36.94 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -2.24 Total: 4.10 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -2.63 Total: -3.84 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 1.01 Total: -35.72 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.08 Total: -19.30 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.99 -4.95 -36.94 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184746340.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.613 kcal (2) G-P(sol) polarization free energy of solvation -31.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds