Wall clock time and date at job start Sun Mar 29 2020 22:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 O 1.42903 * 109.46878 * 179.97438 * 9 7 2 11 11 C 1.35652 * 116.99750 * 179.97438 * 10 9 7 12 12 C 1.38633 * 120.13859 * 0.02562 * 11 10 9 13 13 C 1.38146 * 120.15955 * 180.02562 * 12 11 10 14 14 C 1.38413 * 120.43139 * 359.97438 * 13 12 11 15 15 C 1.38137 * 120.26978 * 0.04178 * 14 13 12 16 16 F 1.35103 * 120.07972 * 179.97438 * 15 14 13 17 17 C 1.39967 * 119.83796 * 359.68597 * 15 14 13 18 18 C 1.47387 * 120.21271 * 180.29120 * 17 15 14 19 19 N 1.34783 * 119.99854 * 90.27118 * 18 17 15 20 20 O 1.21610 * 120.00122 * 270.27339 * 18 17 15 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.08004 * 119.92365 * 0.02562 * 12 11 10 25 25 H 1.07990 * 119.78295 * 180.02562 * 13 12 11 26 26 H 1.07994 * 119.86437 * 180.02562 * 14 13 12 27 27 H 0.97002 * 119.99911 * 0.02562 * 19 18 17 28 28 H 0.96999 * 119.99391 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.6610 -4.8388 0.0011 12 6 0.2871 -5.0238 0.0011 13 6 -0.2415 -6.3001 0.0021 14 6 0.5930 -7.4044 0.0027 15 6 1.9646 -7.2408 0.0031 16 9 2.7755 -8.3214 0.0042 17 6 2.5122 -5.9527 -0.0038 18 6 3.9746 -5.7686 -0.0099 19 7 4.6381 -5.6832 -1.1800 20 8 4.5824 -5.6936 1.0407 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 -0.3717 -4.1679 0.0002 25 1 -1.3126 -6.4371 0.0017 26 1 0.1699 -8.3981 0.0031 27 1 4.1532 -5.7427 -2.0180 28 1 5.6004 -5.5617 -1.1839 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184746340.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:13 Heat of formation + Delta-G solvation = -129.516705 kcal Electronic energy + Delta-G solvation = -16476.071149 eV Core-core repulsion = 13405.533042 eV Total energy + Delta-G solvation = -3070.538107 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.11611 -41.42493 -39.94851 -38.15049 -35.10131 -34.77999 -32.16735 -31.00702 -29.58007 -25.52073 -25.23003 -22.99596 -21.97284 -19.63792 -18.83451 -18.75644 -18.03436 -17.74178 -17.09020 -16.83332 -16.54698 -16.39389 -16.18009 -15.37593 -15.20952 -14.97723 -14.23826 -13.67814 -13.52525 -13.11989 -12.85712 -12.82111 -12.74381 -12.16997 -11.99682 -11.52016 -11.25280 -10.80810 -10.73557 -10.01113 -9.31757 -8.41796 -6.54924 -0.13997 0.20971 1.37049 1.38648 1.40373 1.52152 2.13638 2.38016 2.44119 2.52752 2.93662 3.25234 3.74296 3.92641 3.97520 4.09828 4.29068 4.66116 4.77171 4.94410 4.97341 5.14763 5.28229 5.45927 5.68544 5.75039 5.78831 6.24316 6.39751 6.66523 7.15768 7.16642 8.69872 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.031810 B = 0.006632 C = 0.005660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.009799 B = 4221.204005 C = 4946.210333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.020 3.980 3 Si 0.981 3.019 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.560 4.560 8 H 0.059 0.941 9 C 0.209 3.791 10 O -0.329 6.329 11 C 0.176 3.824 12 C -0.230 4.230 13 C -0.015 4.015 14 C -0.184 4.184 15 C 0.159 3.841 16 F -0.132 7.132 17 C -0.238 4.238 18 C 0.581 3.419 19 N -0.820 5.820 20 O -0.584 6.584 21 H 0.275 0.725 22 H 0.010 0.990 23 H 0.020 0.980 24 H 0.136 0.864 25 H 0.182 0.818 26 H 0.180 0.820 27 H 0.417 0.583 28 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.728 -12.984 -4.831 13.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.181 4.181 3 Si 0.804 3.196 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.597 4.597 8 H 0.077 0.923 9 C 0.137 3.863 10 O -0.242 6.242 11 C 0.128 3.872 12 C -0.249 4.249 13 C -0.033 4.033 14 C -0.203 4.203 15 C 0.139 3.861 16 F -0.110 7.110 17 C -0.243 4.243 18 C 0.365 3.635 19 N -0.383 5.383 20 O -0.464 6.464 21 H 0.084 0.916 22 H 0.028 0.972 23 H 0.037 0.963 24 H 0.154 0.846 25 H 0.199 0.801 26 H 0.198 0.802 27 H 0.248 0.752 28 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -0.419 -12.797 -4.106 13.446 hybrid contribution 0.566 0.942 -0.261 1.130 sum 0.147 -11.855 -4.368 12.634 Atomic orbital electron populations 1.70008 1.07385 1.29101 1.49196 1.25799 0.95989 1.02859 0.93420 0.85210 0.78257 0.77139 0.79027 1.18911 1.19606 1.19541 1.21239 0.94118 0.90334 1.54019 0.92279 1.20375 0.88224 0.81721 0.96005 1.86047 1.39516 1.12630 1.86028 1.19115 0.92278 0.84449 0.91375 1.21600 0.92801 1.00856 1.09632 1.21359 1.02150 0.89072 0.90672 1.21297 0.89221 1.02491 1.07271 1.17384 0.89096 0.80053 0.99595 1.91507 1.73427 1.52557 1.93548 1.19018 0.93246 0.92250 1.19744 1.18018 0.87036 0.74248 0.84218 1.43542 1.12552 1.74406 1.07822 1.90777 1.70150 1.51993 1.33514 0.91580 0.97231 0.96253 0.84590 0.80098 0.80231 0.75228 0.75466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.80 13.29 21.45 0.28 -51.52 15 2 C 0.02 1.08 5.46 84.66 0.46 1.55 15 3 Si 0.98 42.89 29.54 68.60 2.03 44.92 15 4 H -0.26 -10.98 7.11 99.48 0.71 -10.27 15 5 H -0.27 -11.29 7.11 99.48 0.71 -10.59 15 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 15 7 C -0.56 -32.16 9.43 25.60 0.24 -31.92 15 8 H 0.06 3.44 7.81 -2.91 -0.02 3.42 15 9 C 0.21 11.08 4.49 71.24 0.32 11.40 15 10 O -0.33 -16.19 9.57 -89.67 -0.86 -17.05 15 11 C 0.18 7.07 6.70 22.84 0.15 7.23 15 12 C -0.23 -7.62 9.03 22.34 0.20 -7.42 15 13 C -0.01 -0.34 10.03 22.29 0.22 -0.12 15 14 C -0.18 -4.07 10.01 22.29 0.22 -3.84 15 15 C 0.16 4.66 7.29 22.66 0.17 4.83 15 16 F -0.13 -3.80 16.83 44.97 0.76 -3.05 15 17 C -0.24 -8.66 5.64 -19.98 -0.11 -8.77 15 18 C 0.58 22.36 6.70 86.65 0.58 22.94 15 19 N -0.82 -22.80 8.87 -175.90 -1.56 -24.36 15 20 O -0.58 -27.49 17.94 -4.06 -0.07 -27.56 15 21 H 0.28 14.36 8.31 -92.71 -0.77 13.59 15 22 H 0.01 0.54 7.66 -2.39 -0.02 0.52 15 23 H 0.02 1.04 7.66 -2.39 -0.02 1.02 15 24 H 0.14 4.78 6.29 -2.91 -0.02 4.76 15 25 H 0.18 2.55 8.06 -2.92 -0.02 2.52 15 26 H 0.18 2.50 8.06 -2.91 -0.02 2.47 15 27 H 0.42 9.14 8.81 -92.71 -0.82 8.32 15 28 H 0.41 9.72 8.93 -92.71 -0.83 8.89 15 Total: -1.00 -71.79 263.72 2.62 -69.18 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -0.42 Total: 13.57 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 2.46 Total: -4.12 kcal Atomic # 7 Polarization: -74.60 SS G_CDS: -1.28 Total: -75.88 kcal Atomic # 8 Polarization: -43.68 SS G_CDS: -0.93 Total: -44.61 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.76 Total: -3.05 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -71.79 2.62 -69.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184746340.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.340 kcal (2) G-P(sol) polarization free energy of solvation -71.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds