Wall clock time and date at job start Sun Mar 29 2020 21:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34955 * 125.64061 * 2 1 4 4 C 1.35569 * 109.00151 * 180.02562 * 3 2 1 5 5 N 1.48006 * 126.07152 * 180.02562 * 4 3 2 6 6 O 1.31702 * 120.00423 * 0.02562 * 5 4 3 7 7 O 1.31703 * 119.99828 * 179.97438 * 5 4 3 8 8 C 1.39719 * 107.85054 * 0.02562 * 4 3 2 9 9 C 1.37719 * 125.63662 * 179.70165 * 2 1 3 10 10 C 1.46418 * 126.26686 * 359.97438 * 9 2 1 11 11 O 1.21637 * 120.00389 * 5.49032 * 10 9 2 12 12 N 1.34774 * 119.99613 * 185.48250 * 10 9 2 13 13 C 1.33231 * 119.99758 * 185.20611 * 12 10 9 14 14 H 1.07991 * 120.00104 * 359.97438 * 13 12 10 15 15 C 1.46795 * 119.99965 * 180.02562 * 13 12 10 16 16 N 1.29322 * 119.99881 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00152 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46983 * 60.00058 * 17 15 13 19 19 H 1.48502 * 109.47253 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47056 * 299.99798 * 17 15 13 21 21 H 1.09005 * 109.47105 * 85.97902 * 1 2 3 22 22 H 1.09000 * 109.47258 * 325.97899 * 1 2 3 23 23 H 1.08999 * 109.47375 * 205.97914 * 1 2 3 24 24 H 1.08005 * 125.49246 * 0.02639 * 3 2 1 25 25 H 1.08003 * 126.51418 * 180.02562 * 8 4 3 26 26 H 0.96994 * 120.00267 * 5.20834 * 12 10 9 27 27 H 0.96997 * 120.00201 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2514 1.0968 0.0000 4 6 3.5503 0.7086 -0.0006 5 7 4.7278 1.6053 -0.0002 6 8 4.5608 2.9116 0.0012 7 8 5.9427 1.0967 -0.0004 8 6 3.5798 -0.6883 -0.0015 9 6 2.2674 -1.1193 0.0058 10 6 1.8126 -2.5110 0.0136 11 8 0.6270 -2.7640 -0.0854 12 7 2.7078 -3.5117 0.1303 13 6 2.3069 -4.7786 0.0334 14 1 1.2648 -5.0036 -0.1383 15 6 3.2818 -5.8687 0.1610 16 7 4.5298 -5.5992 0.3670 17 14 2.7198 -7.6450 0.0258 18 1 2.1034 -7.8691 -1.3065 19 1 3.8878 -8.5475 0.1884 20 1 1.7215 -7.9304 1.0875 21 1 -0.3633 0.0721 -1.0252 22 1 -0.3634 0.8518 0.5750 23 1 -0.3634 -0.9238 0.4502 24 1 1.9021 2.1188 0.0004 25 1 4.4612 -1.3125 -0.0018 26 1 3.6437 -3.3097 0.2848 27 1 5.1739 -6.3195 0.4517 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000196909964.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:34 Heat of formation + Delta-G solvation = 18.254071 kcal Electronic energy + Delta-G solvation = -16332.724728 eV Core-core repulsion = 13288.514404 eV Total energy + Delta-G solvation = -3044.210324 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.07593 -40.02135 -39.47905 -36.22856 -35.41009 -34.49239 -33.69141 -31.27447 -28.89363 -26.97901 -26.31934 -23.61779 -21.99239 -20.97613 -20.45550 -19.11094 -18.89848 -17.61000 -17.33937 -16.95102 -16.55917 -16.43404 -15.94715 -15.27132 -15.02649 -14.50868 -14.05665 -13.80750 -13.45877 -13.34199 -12.98005 -12.50781 -12.45932 -12.21638 -12.10580 -11.82318 -11.66079 -10.60658 -10.51470 -10.43217 -9.86966 -8.78275 -5.86472 -1.49177 0.09501 0.20086 1.08306 1.38146 1.42366 1.45040 1.53282 2.21676 2.23673 2.98325 3.09220 3.31562 3.59656 3.79905 3.98076 4.29724 4.37051 4.43972 4.53279 4.76774 5.02021 5.07613 5.29311 5.61422 5.75332 5.78958 6.32636 6.93201 7.31941 7.96372 8.35892 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.030140 B = 0.006355 C = 0.005268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.776435 B = 4405.207627 C = 5313.473666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.381 5.381 3 C 0.145 3.855 4 C -0.109 4.109 5 N 0.034 4.966 6 O -0.182 6.182 7 O -0.258 6.258 8 C -0.125 4.125 9 C 0.006 3.994 10 C 0.450 3.550 11 O -0.636 6.636 12 N -0.504 5.504 13 C -0.380 4.380 14 H 0.096 0.904 15 C 0.009 3.991 16 N -0.861 5.861 17 Si 1.004 2.996 18 H -0.265 1.265 19 H -0.264 1.264 20 H -0.265 1.265 21 H 0.101 0.899 22 H 0.137 0.863 23 H 0.090 0.910 24 H 0.249 0.751 25 H 0.159 0.841 26 H 0.395 0.605 27 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.727 8.550 -0.044 10.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.053 5.053 3 C -0.002 4.002 4 C -0.206 4.206 5 N 0.499 4.501 6 O -0.376 6.376 7 O -0.430 6.430 8 C -0.151 4.151 9 C -0.107 4.107 10 C 0.241 3.759 11 O -0.529 6.529 12 N -0.132 5.132 13 C -0.511 4.511 14 H 0.113 0.887 15 C -0.203 4.203 16 N -0.494 5.494 17 Si 0.825 3.175 18 H -0.190 1.190 19 H -0.189 1.189 20 H -0.190 1.190 21 H 0.119 0.881 22 H 0.155 0.845 23 H 0.109 0.891 24 H 0.265 0.735 25 H 0.176 0.824 26 H 0.229 0.771 27 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.996 7.734 -0.091 10.429 hybrid contribution 1.104 -0.543 0.013 1.230 sum -5.892 7.191 -0.078 9.297 Atomic orbital electron populations 1.22825 0.71605 1.07296 1.06332 1.44232 1.09378 1.03481 1.48190 1.22315 0.86411 0.94882 0.96549 1.19408 0.84491 0.89339 1.27363 1.49621 1.03463 1.02539 0.94488 1.96184 1.94326 0.91322 1.55793 1.96304 1.05602 1.79894 1.61163 1.21213 0.96715 0.92247 1.04893 1.20306 0.88643 0.89228 1.12503 1.16411 0.86162 0.83046 0.90278 1.90541 1.16604 1.84171 1.61570 1.40591 1.10016 1.05551 1.57068 1.20625 0.95803 0.81918 1.52727 0.88652 1.27817 0.93914 1.04807 0.93733 1.68672 1.03621 1.38152 1.38986 0.84846 0.78507 0.74481 0.79684 1.18953 1.18853 1.18956 0.88086 0.84455 0.89144 0.73509 0.82379 0.77106 0.89055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.14 10.64 127.77 1.36 2.50 15 2 N -0.38 -10.24 3.15 -534.70 -1.68 -11.93 15 3 C 0.15 3.31 11.06 83.59 0.92 4.24 15 4 C -0.11 -3.44 7.17 36.12 0.26 -3.18 15 5 N 0.03 1.21 4.98 -47.09 -0.23 0.98 15 6 O -0.18 -6.01 19.76 3.51 0.07 -5.94 15 7 O -0.26 -10.49 19.78 3.51 0.07 -10.42 15 8 C -0.13 -4.48 10.11 22.60 0.23 -4.26 15 9 C 0.01 0.22 6.89 40.33 0.28 0.50 15 10 C 0.45 20.92 7.69 86.37 0.66 21.59 15 11 O -0.64 -32.25 14.17 -4.15 -0.06 -32.31 15 12 N -0.50 -25.01 5.14 -306.92 -1.58 -26.58 15 13 C -0.38 -20.11 9.92 86.72 0.86 -19.25 15 14 H 0.10 5.32 7.20 -2.92 -0.02 5.30 15 15 C 0.01 0.44 5.70 87.30 0.50 0.94 15 16 N -0.86 -42.33 13.09 23.26 0.30 -42.02 15 17 Si 1.00 38.15 29.65 68.60 2.03 40.18 15 18 H -0.26 -9.96 7.11 99.48 0.71 -9.26 15 19 H -0.26 -9.33 7.11 99.48 0.71 -8.63 15 20 H -0.26 -9.96 7.11 99.48 0.71 -9.26 15 21 H 0.10 1.73 8.14 -2.38 -0.02 1.71 15 22 H 0.14 1.32 8.14 -2.39 -0.02 1.30 15 23 H 0.09 2.49 6.20 -2.39 -0.01 2.47 15 24 H 0.25 2.90 8.06 -2.91 -0.02 2.88 15 25 H 0.16 5.84 7.50 -2.91 -0.02 5.82 15 26 H 0.39 18.94 6.93 -92.71 -0.64 18.30 15 27 H 0.30 13.33 8.26 -92.71 -0.77 12.57 15 Total: -1.00 -66.34 260.65 4.59 -61.75 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 0.59 Total: 23.21 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: 5.07 Total: 3.09 kcal Atomic # 7 Polarization: -76.36 SS G_CDS: -3.19 Total: -79.55 kcal Atomic # 8 Polarization: -48.75 SS G_CDS: 0.08 Total: -48.67 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 2.03 Total: 40.18 kcal Total: -66.34 4.59 -61.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196909964.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.007 kcal (2) G-P(sol) polarization free energy of solvation -66.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds