Wall clock time and date at job start Sun Mar 29 2020 22:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99765 * 2 1 4 4 H 1.48498 * 109.47343 * 269.99855 * 3 2 1 5 5 H 1.48506 * 109.47291 * 30.00008 * 3 2 1 6 6 H 1.48501 * 109.47150 * 149.99664 * 3 2 1 7 7 C 1.37871 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00427 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00042 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.47550 * 179.97438 * 9 7 2 11 11 C 1.46894 * 111.00559 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47515 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 C 1.38239 * 120.00487 * 100.00100 * 13 12 11 15 15 C 1.38220 * 120.01336 * 179.97438 * 14 13 12 16 16 C 1.38259 * 120.02394 * 0.03851 * 15 14 13 17 17 C 1.38197 * 120.01707 * 359.97438 * 16 15 14 18 18 C 1.38331 * 120.00622 * 279.72913 * 13 12 11 19 19 Cl 1.73596 * 120.01445 * 359.97409 * 18 13 12 20 20 H 0.96996 * 120.00288 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.46949 * 60.00004 * 9 7 2 22 22 H 1.09005 * 109.47134 * 299.99983 * 9 7 2 23 23 H 1.00899 * 110.99900 * 56.04064 * 10 9 7 24 24 H 1.09002 * 109.47104 * 59.99767 * 11 10 9 25 25 H 1.08998 * 109.46828 * 300.00600 * 11 10 9 26 26 H 1.09002 * 109.47153 * 59.99762 * 12 11 10 27 27 H 1.09001 * 109.46832 * 299.99953 * 12 11 10 28 28 H 1.08002 * 119.99356 * 359.97438 * 14 13 12 29 29 H 1.08000 * 119.98661 * 180.02562 * 15 14 13 30 30 H 1.07999 * 119.99473 * 179.97438 * 16 15 14 31 31 H 1.07998 * 120.00665 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 7 4.0014 -2.5789 0.0022 11 6 5.4698 -2.6181 0.0034 12 6 5.9412 -4.0737 0.0039 13 6 7.4477 -4.1138 0.0045 14 6 8.1327 -4.3398 1.1838 15 6 9.5144 -4.3772 1.1845 16 6 10.2121 -4.1878 0.0060 17 6 9.5284 -3.9616 -1.1735 18 6 8.1451 -3.9301 -1.1759 19 17 7.2853 -3.6540 -2.6585 20 1 -0.4850 0.8400 -0.0004 21 1 3.8745 -0.6799 0.8912 22 1 3.8753 -0.6803 -0.8889 23 1 3.6261 -3.0958 -0.7789 24 1 5.8460 -2.1137 0.8935 25 1 5.8474 -2.1146 -0.8864 26 1 5.5650 -4.5777 -0.8863 27 1 5.5635 -4.5775 0.8937 28 1 7.5882 -4.4872 2.1048 29 1 10.0491 -4.5542 2.1059 30 1 11.2917 -4.2167 0.0071 31 1 10.0736 -3.8141 -2.0941 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000222736034.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:13 Heat of formation + Delta-G solvation = 7.183116 kcal Electronic energy + Delta-G solvation = -14099.443734 eV Core-core repulsion = 11599.002846 eV Total energy + Delta-G solvation = -2500.440888 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.58763 -36.46667 -35.92311 -33.23528 -31.96210 -30.86204 -28.79765 -26.17463 -22.83537 -22.79549 -21.06457 -20.87580 -17.13477 -16.76147 -15.96801 -15.52240 -14.89821 -14.29264 -14.09028 -13.93028 -13.61229 -12.98019 -12.88257 -12.35076 -12.20614 -11.68165 -11.63512 -11.53440 -11.31759 -10.89013 -10.73422 -10.53816 -10.34394 -9.79086 -9.28252 -9.02120 -8.72633 -8.58188 -7.46414 -6.04342 -4.02125 1.01507 1.11914 2.10755 3.29988 3.37210 3.40672 3.47585 4.43726 4.56043 4.64634 4.77969 5.09427 5.15258 5.28270 5.34126 5.44983 5.52357 5.61789 5.79513 5.98304 6.07815 6.09884 6.24106 6.39083 6.46985 6.66103 6.81019 7.04000 7.62784 7.90598 8.35455 8.66811 9.03721 9.57822 11.09006 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.035532 B = 0.005003 C = 0.004856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.839801 B = 5594.972907 C = 5764.101028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.515 4.515 8 H 0.079 0.921 9 C 0.164 3.836 10 N -0.680 5.680 11 C 0.064 3.936 12 C -0.084 4.084 13 C -0.062 4.062 14 C -0.105 4.105 15 C -0.115 4.115 16 C -0.119 4.119 17 C -0.111 4.111 18 C -0.036 4.036 19 Cl -0.065 7.065 20 H 0.264 0.736 21 H 0.026 0.974 22 H -0.021 1.021 23 H 0.335 0.665 24 H 0.063 0.937 25 H 0.024 0.976 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.133 0.867 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.054 -8.925 -0.955 22.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.554 4.554 8 H 0.097 0.903 9 C 0.036 3.964 10 N -0.310 5.310 11 C -0.066 4.066 12 C -0.122 4.122 13 C -0.064 4.064 14 C -0.123 4.123 15 C -0.133 4.133 16 C -0.137 4.137 17 C -0.130 4.130 18 C -0.062 4.062 19 Cl -0.036 7.036 20 H 0.073 0.927 21 H 0.044 0.956 22 H -0.003 1.003 23 H 0.152 0.848 24 H 0.082 0.918 25 H 0.043 0.957 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.151 0.849 29 H 0.145 0.855 30 H 0.146 0.854 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 20.752 -8.830 -0.401 22.556 hybrid contribution 0.567 1.289 -1.067 1.767 sum 21.319 -7.540 -1.468 22.660 Atomic orbital electron populations 1.69902 1.06143 1.26862 1.51084 1.24900 0.94746 0.98929 0.94737 0.86827 0.80348 0.83877 0.78479 1.20334 1.21123 1.19173 1.21070 0.88946 0.94830 1.50512 0.90259 1.19999 0.96603 0.84996 0.94753 1.60485 1.04307 1.16767 1.49456 1.21851 0.90701 0.93940 1.00156 1.20696 0.88720 0.98782 1.04006 1.19919 0.96916 0.97958 0.91571 1.21125 0.94185 0.99568 0.97435 1.21244 0.94287 0.99501 0.98310 1.21067 0.99997 1.00517 0.92140 1.21039 0.91999 1.00697 0.99268 1.20905 0.92453 1.05065 0.87796 1.98381 1.77253 1.94545 1.33442 0.92661 0.95622 1.00293 0.84789 0.91804 0.95745 0.90461 0.89734 0.84890 0.85529 0.85401 0.85189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.05 13.96 55.43 0.77 -27.27 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 22.01 27.47 -169.99 -4.67 17.34 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 6 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 7 C -0.52 -15.05 9.87 -34.44 -0.34 -15.39 16 8 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 9 C 0.16 4.11 4.51 -4.98 -0.02 4.09 16 10 N -0.68 -14.39 6.49 -115.06 -0.75 -15.14 16 11 C 0.06 1.10 5.62 -3.83 -0.02 1.08 16 12 C -0.08 -1.19 5.06 -27.88 -0.14 -1.33 16 13 C -0.06 -0.79 5.14 -104.59 -0.54 -1.33 16 14 C -0.10 -1.14 9.67 -39.59 -0.38 -1.52 16 15 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 16 C -0.12 -1.07 10.05 -39.59 -0.40 -1.47 16 17 C -0.11 -1.16 9.83 -39.55 -0.39 -1.55 16 18 C -0.04 -0.44 6.31 -39.50 -0.25 -0.69 16 19 Cl -0.07 -0.85 26.65 -51.86 -1.38 -2.23 16 20 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 21 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 22 H -0.02 -0.51 7.57 -51.93 -0.39 -0.91 16 23 H 0.34 6.87 8.72 -39.29 -0.34 6.52 16 24 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.02 0.43 7.29 -51.93 -0.38 0.05 16 26 H 0.08 1.08 7.34 -51.93 -0.38 0.70 16 27 H 0.08 1.15 8.01 -51.93 -0.42 0.73 16 28 H 0.13 1.26 8.04 -52.49 -0.42 0.84 16 29 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 30 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 31 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 279.75 15.07 4.22 4.22 Total: -1.00 -31.32 279.75 -8.77 -40.09 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -3.99 Total: 0.62 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: -2.98 Total: -17.63 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: 0.03 Total: -42.41 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.38 Total: -2.23 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.32 -8.77 -40.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222736034.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.274 kcal (2) G-P(sol) polarization free energy of solvation -31.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds