Wall clock time and date at job start Sun Mar 29 2020 22:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99765 * 2 1 4 4 H 1.48498 * 109.47343 * 269.99855 * 3 2 1 5 5 H 1.48506 * 109.47291 * 30.00008 * 3 2 1 6 6 H 1.48501 * 109.47150 * 149.99664 * 3 2 1 7 7 C 1.37871 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00427 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00042 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.47550 * 179.97438 * 9 7 2 11 11 C 1.46894 * 111.00559 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47515 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 C 1.38239 * 120.00487 * 100.00100 * 13 12 11 15 15 C 1.38220 * 120.01336 * 179.97438 * 14 13 12 16 16 C 1.38259 * 120.02394 * 0.03851 * 15 14 13 17 17 C 1.38197 * 120.01707 * 359.97438 * 16 15 14 18 18 C 1.38331 * 120.00622 * 279.72913 * 13 12 11 19 19 Cl 1.73596 * 120.01445 * 359.97409 * 18 13 12 20 20 H 0.96996 * 120.00288 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.46949 * 60.00004 * 9 7 2 22 22 H 1.09005 * 109.47134 * 299.99983 * 9 7 2 23 23 H 1.00899 * 110.99900 * 56.04064 * 10 9 7 24 24 H 1.09002 * 109.47104 * 59.99767 * 11 10 9 25 25 H 1.08998 * 109.46828 * 300.00600 * 11 10 9 26 26 H 1.09002 * 109.47153 * 59.99762 * 12 11 10 27 27 H 1.09001 * 109.46832 * 299.99953 * 12 11 10 28 28 H 1.08002 * 119.99356 * 359.97438 * 14 13 12 29 29 H 1.08000 * 119.98661 * 180.02562 * 15 14 13 30 30 H 1.07999 * 119.99473 * 179.97438 * 16 15 14 31 31 H 1.07998 * 120.00665 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 7 4.0014 -2.5789 0.0022 11 6 5.4698 -2.6181 0.0034 12 6 5.9412 -4.0737 0.0039 13 6 7.4477 -4.1138 0.0045 14 6 8.1327 -4.3398 1.1838 15 6 9.5144 -4.3772 1.1845 16 6 10.2121 -4.1878 0.0060 17 6 9.5284 -3.9616 -1.1735 18 6 8.1451 -3.9301 -1.1759 19 17 7.2853 -3.6540 -2.6585 20 1 -0.4850 0.8400 -0.0004 21 1 3.8745 -0.6799 0.8912 22 1 3.8753 -0.6803 -0.8889 23 1 3.6261 -3.0958 -0.7789 24 1 5.8460 -2.1137 0.8935 25 1 5.8474 -2.1146 -0.8864 26 1 5.5650 -4.5777 -0.8863 27 1 5.5635 -4.5775 0.8937 28 1 7.5882 -4.4872 2.1048 29 1 10.0491 -4.5542 2.1059 30 1 11.2917 -4.2167 0.0071 31 1 10.0736 -3.8141 -2.0941 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000222736034.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:13 Heat of formation + Delta-G solvation = -12.772642 kcal Electronic energy + Delta-G solvation = -14100.309081 eV Core-core repulsion = 11599.002846 eV Total energy + Delta-G solvation = -2501.306235 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.42301 -37.50623 -37.37634 -34.97325 -33.61015 -31.64773 -30.31575 -27.79299 -24.14839 -23.62346 -22.98855 -21.91681 -18.97094 -17.93285 -17.11420 -16.61450 -16.34166 -15.97510 -15.45053 -14.95166 -14.73188 -14.46651 -14.17683 -14.00658 -13.84036 -12.97386 -12.78776 -12.62697 -12.51133 -12.34237 -12.12534 -11.87628 -11.83362 -11.60953 -11.47033 -10.83414 -9.83606 -9.59812 -9.19349 -8.31921 -6.36571 0.20858 0.32865 1.21078 1.32984 1.34735 1.46314 2.32413 2.68367 3.01831 3.40044 3.82236 3.94619 4.14684 4.20118 4.31575 4.45123 4.49412 4.59140 4.74655 4.78053 4.96117 5.00765 5.03027 5.17082 5.32139 5.47639 5.50054 5.54084 5.91181 5.92450 6.52129 6.62340 6.73580 7.28499 8.84848 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.035532 B = 0.005003 C = 0.004856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.839801 B = 5594.972907 C = 5764.101028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.010 3.990 3 Si 0.950 3.050 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.252 1.252 7 C -0.529 4.529 8 H 0.039 0.961 9 C 0.175 3.825 10 N -0.687 5.687 11 C 0.069 3.931 12 C -0.073 4.073 13 C -0.084 4.084 14 C -0.112 4.112 15 C -0.112 4.112 16 C -0.112 4.112 17 C -0.118 4.118 18 C -0.052 4.052 19 Cl -0.082 7.082 20 H 0.268 0.732 21 H 0.025 0.975 22 H -0.018 1.018 23 H 0.336 0.664 24 H 0.063 0.937 25 H 0.022 0.978 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.143 0.857 29 H 0.157 0.843 30 H 0.160 0.840 31 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.085 -8.455 -0.347 25.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.188 4.188 3 Si 0.773 3.227 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.176 1.176 7 C -0.568 4.568 8 H 0.057 0.943 9 C 0.046 3.954 10 N -0.317 5.317 11 C -0.061 4.061 12 C -0.110 4.110 13 C -0.085 4.085 14 C -0.130 4.130 15 C -0.130 4.130 16 C -0.130 4.130 17 C -0.137 4.137 18 C -0.079 4.079 19 Cl -0.053 7.053 20 H 0.077 0.923 21 H 0.043 0.957 22 H 0.000 1.000 23 H 0.154 0.846 24 H 0.081 0.919 25 H 0.040 0.960 26 H 0.091 0.909 27 H 0.105 0.895 28 H 0.161 0.839 29 H 0.174 0.826 30 H 0.178 0.822 31 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 23.800 -8.384 0.207 25.235 hybrid contribution -0.343 1.030 -1.225 1.637 sum 23.458 -7.354 -1.018 24.604 Atomic orbital electron populations 1.70047 1.08099 1.28280 1.52210 1.25858 0.95642 1.03221 0.94066 0.85680 0.79353 0.78506 0.79178 1.19202 1.20264 1.17580 1.21332 0.91261 0.93571 1.50601 0.94270 1.19747 0.93827 0.87199 0.94599 1.60393 1.06965 1.14609 1.49724 1.21871 0.87925 0.96397 0.99885 1.20505 0.90318 0.96296 1.03931 1.19832 0.95791 1.00253 0.92639 1.21350 0.95267 0.99330 0.97091 1.21624 0.93644 0.98007 0.99701 1.21494 1.01640 0.98515 0.91304 1.21320 0.91231 1.00390 1.00712 1.21095 0.93342 1.06345 0.87112 1.98371 1.77770 1.94745 1.34448 0.92262 0.95698 1.00011 0.84637 0.91879 0.95972 0.90915 0.89462 0.83890 0.82564 0.82202 0.83736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.02 13.96 21.45 0.30 -59.72 16 2 C 0.01 0.59 5.47 84.65 0.46 1.05 16 3 Si 0.95 45.05 27.47 68.60 1.88 46.94 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.25 -11.26 6.54 99.48 0.65 -10.61 16 7 C -0.53 -31.59 9.87 25.60 0.25 -31.34 16 8 H 0.04 2.58 8.06 -2.91 -0.02 2.55 16 9 C 0.17 8.72 4.51 85.56 0.39 9.11 16 10 N -0.69 -29.20 6.49 -517.94 -3.36 -32.56 16 11 C 0.07 2.34 5.62 86.30 0.49 2.83 16 12 C -0.07 -2.02 5.06 29.85 0.15 -1.87 16 13 C -0.08 -2.02 5.14 -19.84 -0.10 -2.12 16 14 C -0.11 -2.18 9.67 22.27 0.22 -1.96 16 15 C -0.11 -1.65 10.05 22.27 0.22 -1.43 16 16 C -0.11 -1.59 10.05 22.27 0.22 -1.37 16 17 C -0.12 -2.17 9.83 22.29 0.22 -1.95 16 18 C -0.05 -1.24 6.31 22.32 0.14 -1.10 16 19 Cl -0.08 -2.12 26.65 -2.72 -0.07 -2.19 16 20 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 21 H 0.02 1.25 7.20 -2.39 -0.02 1.23 16 22 H -0.02 -0.87 7.57 -2.38 -0.02 -0.89 16 23 H 0.34 14.07 8.72 -89.70 -0.78 13.29 16 24 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.02 0.77 7.29 -2.39 -0.02 0.75 16 26 H 0.07 2.05 7.34 -2.39 -0.02 2.03 16 27 H 0.09 2.32 8.01 -2.39 -0.02 2.30 16 28 H 0.14 2.39 8.04 -2.91 -0.02 2.36 16 29 H 0.16 1.37 8.06 -2.91 -0.02 1.34 16 30 H 0.16 1.25 8.06 -2.91 -0.02 1.22 16 31 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -67.99 279.75 1.69 -66.30 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 0.29 Total: 11.38 kcal Atomic # 6 Polarization: -32.80 SS G_CDS: 2.66 Total: -30.15 kcal Atomic # 7 Polarization: -89.22 SS G_CDS: -3.06 Total: -92.28 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.88 Total: 46.94 kcal Atomic # 17 Polarization: -2.12 SS G_CDS: -0.07 Total: -2.19 kcal Total: -67.99 1.69 -66.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222736034.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.525 kcal (2) G-P(sol) polarization free energy of solvation -67.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds