Wall clock time and date at job start Sun Mar 29 2020 22:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86806 * 120.00057 * 2 1 4 4 H 1.48500 * 109.47254 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47020 * 299.99890 * 3 2 1 6 6 H 1.48497 * 109.46876 * 60.00521 * 3 2 1 7 7 C 1.37876 * 120.00317 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00551 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99668 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47255 * 180.02562 * 9 7 2 11 11 C 1.46902 * 111.00086 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47079 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47142 * 180.02562 * 12 11 10 14 14 C 1.38270 * 119.99101 * 270.27596 * 13 12 11 15 15 C 1.38215 * 120.02537 * 180.27948 * 14 13 12 16 16 C 1.38238 * 120.01126 * 359.44038 * 15 14 13 17 17 C 1.38325 * 119.98878 * 0.28199 * 16 15 14 18 18 Cl 1.73606 * 120.01335 * 179.97438 * 17 16 15 19 19 C 1.38193 * 119.99765 * 89.99998 * 13 12 11 20 20 H 0.96998 * 120.00196 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47586 * 59.99835 * 9 7 2 22 22 H 1.09009 * 109.47091 * 299.99770 * 9 7 2 23 23 H 1.00905 * 110.99888 * 303.94640 * 10 9 7 24 24 H 1.09004 * 109.46834 * 59.99593 * 11 10 9 25 25 H 1.08998 * 109.47284 * 299.99738 * 11 10 9 26 26 H 1.08998 * 109.47471 * 59.99707 * 12 11 10 27 27 H 1.09000 * 109.47154 * 299.99569 * 12 11 10 28 28 H 1.07997 * 119.98420 * 0.02562 * 14 13 12 29 29 H 1.08002 * 119.99636 * 179.72646 * 15 14 13 30 30 H 1.07999 * 120.00577 * 180.25936 * 16 15 14 31 31 H 1.08003 * 120.00423 * 0.02562 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2056 -3.6157 -0.0015 11 6 1.5053 -4.9070 -0.0020 12 6 2.5302 -6.0430 -0.0023 13 6 1.8117 -7.3677 -0.0035 14 6 1.4767 -7.9734 1.1935 15 6 0.8230 -9.1911 1.1933 16 6 0.4934 -9.7987 -0.0038 17 6 0.8231 -9.1906 -1.2016 18 17 0.4101 -9.9535 -2.7054 19 6 1.4828 -7.9743 -1.2008 20 1 -0.4850 0.8400 0.0004 21 1 0.6246 -2.5563 -0.8919 22 1 0.6240 -2.5574 0.8881 23 1 2.8410 -3.5483 -0.7824 24 1 0.8807 -4.9812 -0.8922 25 1 0.8800 -4.9816 0.8877 26 1 3.1551 -5.9689 0.8876 27 1 3.1551 -5.9683 -0.8923 28 1 1.7297 -7.4966 2.1290 29 1 0.5655 -9.6659 2.1286 30 1 -0.0212 -10.7483 -0.0039 31 1 1.7410 -7.4992 -2.1358 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224479238.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:17 Heat of formation + Delta-G solvation = 0.391988 kcal Electronic energy + Delta-G solvation = -13788.488157 eV Core-core repulsion = 11287.752783 eV Total energy + Delta-G solvation = -2500.735374 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.52978 -36.69443 -35.72070 -33.21133 -31.88337 -30.83003 -28.51749 -25.88790 -22.90616 -22.75262 -21.32798 -20.84455 -17.04368 -16.40091 -15.80820 -15.57725 -14.80409 -14.52502 -14.05035 -13.74593 -13.60209 -13.17623 -12.57026 -12.29316 -12.03794 -11.59551 -11.50608 -11.46349 -11.08769 -10.93908 -10.80372 -10.59446 -10.54701 -9.93184 -9.21743 -8.96733 -8.71533 -8.49370 -7.33221 -6.03947 -4.06157 1.05879 1.16219 1.99866 3.30778 3.37906 3.42990 3.51931 4.41992 4.61814 4.69665 4.94053 5.15377 5.22030 5.32064 5.35875 5.43872 5.60149 5.73608 5.84432 5.99892 6.10096 6.19154 6.24552 6.44640 6.58238 6.71449 7.23577 7.40575 7.77300 8.11219 8.36617 8.59164 9.03386 9.58966 11.07271 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.044150 B = 0.003766 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.048170 B = 7433.830032 C = 7702.411586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.514 4.514 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.691 5.691 11 C 0.066 3.934 12 C -0.081 4.081 13 C -0.057 4.057 14 C -0.111 4.111 15 C -0.107 4.107 16 C -0.122 4.122 17 C -0.032 4.032 18 Cl -0.078 7.078 19 C -0.109 4.109 20 H 0.261 0.739 21 H -0.013 1.013 22 H 0.028 0.972 23 H 0.328 0.672 24 H 0.019 0.981 25 H 0.065 0.935 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.131 0.869 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.907 -19.780 -0.783 19.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.553 4.553 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.321 5.321 11 C -0.065 4.065 12 C -0.119 4.119 13 C -0.058 4.058 14 C -0.129 4.129 15 C -0.125 4.125 16 C -0.141 4.141 17 C -0.059 4.059 18 Cl -0.049 7.049 19 C -0.128 4.128 20 H 0.071 0.929 21 H 0.004 0.996 22 H 0.046 0.954 23 H 0.145 0.855 24 H 0.037 0.963 25 H 0.084 0.916 26 H 0.102 0.898 27 H 0.090 0.910 28 H 0.149 0.851 29 H 0.148 0.852 30 H 0.147 0.853 31 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.789 -19.702 -0.230 19.785 hybrid contribution -0.138 0.798 -1.072 1.343 sum 1.651 -18.905 -1.302 19.021 Atomic orbital electron populations 1.69970 1.06115 1.26713 1.50946 1.25000 0.94878 0.99421 0.95324 0.86422 0.80063 0.83294 0.77517 1.19622 1.21084 1.20972 1.21229 0.93572 0.90213 1.50288 0.91856 1.19568 0.90615 0.87361 0.95836 1.60681 1.21281 1.01242 1.48924 1.21838 0.94852 0.89662 1.00101 1.20690 0.97776 0.89787 1.03632 1.19991 0.97211 0.96353 0.92212 1.21252 0.98265 0.95170 0.98254 1.21106 0.98361 0.95513 0.97499 1.20996 1.01478 1.00720 0.90882 1.20911 1.02527 0.95482 0.86976 1.98364 1.92448 1.81367 1.32727 1.21006 0.98973 0.93784 0.99051 0.92942 0.99559 0.95405 0.85542 0.96261 0.91641 0.89811 0.91041 0.85117 0.85178 0.85280 0.85000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.51 -14.66 9.32 -34.44 -0.32 -14.98 16 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.19 5.11 5.44 -4.98 -0.03 5.08 16 10 N -0.69 -14.72 6.49 -115.05 -0.75 -15.47 16 11 C 0.07 1.15 5.67 -3.82 -0.02 1.12 16 12 C -0.08 -1.10 5.60 -27.88 -0.16 -1.26 16 13 C -0.06 -0.71 5.13 -104.63 -0.54 -1.25 16 14 C -0.11 -1.25 9.70 -39.58 -0.38 -1.63 16 15 C -0.11 -1.05 10.05 -39.59 -0.40 -1.45 16 16 C -0.12 -1.26 9.83 -39.55 -0.39 -1.65 16 17 C -0.03 -0.38 6.32 -39.50 -0.25 -0.63 16 18 Cl -0.08 -0.85 28.96 -51.86 -1.50 -2.35 16 19 C -0.11 -1.34 9.49 -39.55 -0.38 -1.72 16 20 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 21 H -0.01 -0.38 8.14 -51.93 -0.42 -0.80 16 22 H 0.03 0.79 8.14 -51.92 -0.42 0.37 16 23 H 0.33 6.60 8.72 -39.29 -0.34 6.26 16 24 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.08 1.11 8.09 -51.93 -0.42 0.69 16 27 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 28 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 29 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 30 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.13 1.53 8.06 -52.48 -0.42 1.11 16 LS Contribution 287.41 15.07 4.33 4.33 Total: -1.00 -30.20 287.41 -9.27 -39.47 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -4.11 Total: 0.50 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -2.96 Total: -16.88 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: -0.01 Total: -41.75 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.50 Total: -2.35 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.20 -9.27 -39.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224479238.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.863 kcal (2) G-P(sol) polarization free energy of solvation -30.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds