Wall clock time and date at job start Sun Mar 29 2020 22:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86806 * 120.00057 * 2 1 4 4 H 1.48500 * 109.47254 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47020 * 299.99890 * 3 2 1 6 6 H 1.48497 * 109.46876 * 60.00521 * 3 2 1 7 7 C 1.37876 * 120.00317 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00551 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99668 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47255 * 180.02562 * 9 7 2 11 11 C 1.46902 * 111.00086 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47079 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47142 * 180.02562 * 12 11 10 14 14 C 1.38270 * 119.99101 * 270.27596 * 13 12 11 15 15 C 1.38215 * 120.02537 * 180.27948 * 14 13 12 16 16 C 1.38238 * 120.01126 * 359.44038 * 15 14 13 17 17 C 1.38325 * 119.98878 * 0.28199 * 16 15 14 18 18 Cl 1.73606 * 120.01335 * 179.97438 * 17 16 15 19 19 C 1.38193 * 119.99765 * 89.99998 * 13 12 11 20 20 H 0.96998 * 120.00196 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47586 * 59.99835 * 9 7 2 22 22 H 1.09009 * 109.47091 * 299.99770 * 9 7 2 23 23 H 1.00905 * 110.99888 * 303.94640 * 10 9 7 24 24 H 1.09004 * 109.46834 * 59.99593 * 11 10 9 25 25 H 1.08998 * 109.47284 * 299.99738 * 11 10 9 26 26 H 1.08998 * 109.47471 * 59.99707 * 12 11 10 27 27 H 1.09000 * 109.47154 * 299.99569 * 12 11 10 28 28 H 1.07997 * 119.98420 * 0.02562 * 14 13 12 29 29 H 1.08002 * 119.99636 * 179.72646 * 15 14 13 30 30 H 1.07999 * 120.00577 * 180.25936 * 16 15 14 31 31 H 1.08003 * 120.00423 * 0.02562 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2056 -3.6157 -0.0015 11 6 1.5053 -4.9070 -0.0020 12 6 2.5302 -6.0430 -0.0023 13 6 1.8117 -7.3677 -0.0035 14 6 1.4767 -7.9734 1.1935 15 6 0.8230 -9.1911 1.1933 16 6 0.4934 -9.7987 -0.0038 17 6 0.8231 -9.1906 -1.2016 18 17 0.4101 -9.9535 -2.7054 19 6 1.4828 -7.9743 -1.2008 20 1 -0.4850 0.8400 0.0004 21 1 0.6246 -2.5563 -0.8919 22 1 0.6240 -2.5574 0.8881 23 1 2.8410 -3.5483 -0.7824 24 1 0.8807 -4.9812 -0.8922 25 1 0.8800 -4.9816 0.8877 26 1 3.1551 -5.9689 0.8876 27 1 3.1551 -5.9683 -0.8923 28 1 1.7297 -7.4966 2.1290 29 1 0.5655 -9.6659 2.1286 30 1 -0.0212 -10.7483 -0.0039 31 1 1.7410 -7.4992 -2.1358 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000224479238.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:17 Heat of formation + Delta-G solvation = -17.571640 kcal Electronic energy + Delta-G solvation = -13789.267118 eV Core-core repulsion = 11287.752783 eV Total energy + Delta-G solvation = -2501.514335 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.41729 -37.70718 -37.20399 -34.98063 -33.43857 -31.68596 -30.00551 -27.63601 -24.40685 -23.62285 -23.17810 -21.92133 -18.57575 -17.88890 -16.97783 -16.66818 -16.40252 -16.12650 -15.32637 -14.95107 -14.67394 -14.44346 -14.00867 -13.84602 -13.70503 -12.97154 -12.72611 -12.67676 -12.52976 -12.33973 -12.22007 -12.02382 -11.86330 -11.70989 -11.27951 -10.67656 -9.85944 -9.62554 -9.16400 -8.23245 -6.34956 0.18865 0.29816 1.13643 1.42175 1.42791 1.56978 2.40209 2.64465 3.10298 3.47322 3.84682 3.97462 4.12323 4.20451 4.34178 4.38712 4.46385 4.61623 4.73780 4.93185 5.01761 5.06878 5.16144 5.25963 5.26785 5.39182 5.60464 5.62004 5.86713 6.00391 6.41248 6.70718 6.88226 7.36450 8.88810 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.044150 B = 0.003766 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.048170 B = 7433.830032 C = 7702.411586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.976 3.024 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.536 4.536 8 H 0.067 0.933 9 C 0.206 3.794 10 N -0.687 5.687 11 C 0.068 3.932 12 C -0.066 4.066 13 C -0.073 4.073 14 C -0.118 4.118 15 C -0.103 4.103 16 C -0.120 4.120 17 C -0.045 4.045 18 Cl -0.076 7.076 19 C -0.122 4.122 20 H 0.265 0.735 21 H -0.041 1.041 22 H 0.000 1.000 23 H 0.337 0.663 24 H 0.011 0.989 25 H 0.057 0.943 26 H 0.089 0.911 27 H 0.079 0.921 28 H 0.142 0.858 29 H 0.161 0.839 30 H 0.151 0.849 31 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.806 -20.396 -0.297 20.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.574 4.574 8 H 0.085 0.915 9 C 0.078 3.922 10 N -0.318 5.318 11 C -0.061 4.061 12 C -0.104 4.104 13 C -0.073 4.073 14 C -0.136 4.136 15 C -0.120 4.120 16 C -0.139 4.139 17 C -0.072 4.072 18 Cl -0.047 7.047 19 C -0.140 4.140 20 H 0.074 0.926 21 H -0.023 1.023 22 H 0.018 0.982 23 H 0.154 0.846 24 H 0.030 0.970 25 H 0.075 0.925 26 H 0.108 0.892 27 H 0.098 0.902 28 H 0.160 0.840 29 H 0.178 0.822 30 H 0.168 0.832 31 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.704 -20.346 0.251 20.527 hybrid contribution -0.470 0.887 -1.217 1.578 sum 2.234 -19.459 -0.967 19.611 Atomic orbital electron populations 1.70100 1.07920 1.28012 1.51564 1.25993 0.95793 1.03546 0.94506 0.85242 0.78980 0.78069 0.77743 1.18452 1.20336 1.20349 1.21591 0.93935 0.91311 1.50582 0.91460 1.19229 0.90723 0.89092 0.93166 1.60551 1.20444 1.01459 1.49348 1.21872 0.95760 0.89201 0.99277 1.20490 0.96693 0.88847 1.04335 1.19897 0.98390 0.96082 0.92981 1.21490 0.98125 0.95781 0.98182 1.21453 0.97123 0.94834 0.98630 1.21331 1.00730 1.01354 0.90477 1.21062 1.02895 0.95547 0.87669 1.98361 1.92418 1.81214 1.32735 1.21077 0.99536 0.94377 0.99060 0.92587 1.02306 0.98232 0.84596 0.97039 0.92480 0.89243 0.90216 0.84043 0.82179 0.83166 0.85131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.08 13.29 21.45 0.28 -56.80 16 2 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 3 Si 0.98 44.29 29.54 68.60 2.03 46.32 16 4 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 6 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.54 -30.82 9.32 25.60 0.24 -30.59 16 8 H 0.07 3.73 7.81 -2.91 -0.02 3.71 16 9 C 0.21 11.23 5.44 85.56 0.47 11.70 16 10 N -0.69 -29.58 6.49 -517.91 -3.36 -32.94 16 11 C 0.07 2.42 5.67 86.30 0.49 2.91 16 12 C -0.07 -1.74 5.60 29.85 0.17 -1.58 16 13 C -0.07 -1.74 5.13 -19.87 -0.10 -1.85 16 14 C -0.12 -2.43 9.70 22.27 0.22 -2.22 16 15 C -0.10 -1.76 10.05 22.26 0.22 -1.53 16 16 C -0.12 -2.21 9.83 22.29 0.22 -1.99 16 17 C -0.05 -1.00 6.32 22.32 0.14 -0.85 16 18 Cl -0.08 -1.59 28.96 -2.72 -0.08 -1.67 16 19 C -0.12 -2.91 9.49 22.29 0.21 -2.70 16 20 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 21 H -0.04 -2.40 8.14 -2.39 -0.02 -2.42 16 22 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 23 H 0.34 13.53 8.72 -89.69 -0.78 12.75 16 24 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 25 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.09 2.26 8.09 -2.39 -0.02 2.24 16 27 H 0.08 1.96 8.08 -2.39 -0.02 1.94 16 28 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 29 H 0.16 1.75 8.06 -2.91 -0.02 1.72 16 30 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 31 H 0.13 3.03 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -64.68 287.41 1.94 -62.75 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 0.33 Total: 10.60 kcal Atomic # 6 Polarization: -30.99 SS G_CDS: 2.73 Total: -28.26 kcal Atomic # 7 Polarization: -86.66 SS G_CDS: -3.08 Total: -89.74 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 17 Polarization: -1.59 SS G_CDS: -0.08 Total: -1.67 kcal Total: -64.68 1.94 -62.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224479238.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.174 kcal (2) G-P(sol) polarization free energy of solvation -64.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds