Wall clock time and date at job start Sun Mar 29 2020 22:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86795 * 119.99682 * 2 1 4 4 H 1.48500 * 109.47200 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47340 * 300.00167 * 3 2 1 6 6 H 1.48496 * 109.47084 * 60.00402 * 3 2 1 7 7 C 1.37879 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99762 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99684 * 359.97438 * 7 2 1 10 10 O 1.42895 * 113.38463 * 46.92306 * 9 7 2 11 11 C 1.53517 * 114.16583 * 180.02562 * 9 7 2 12 12 N 1.47479 * 87.99753 * 139.69853 * 11 9 7 13 13 C 1.46893 * 111.00130 * 221.26429 * 12 11 9 14 14 C 1.50699 * 109.47365 * 170.00095 * 13 12 11 15 15 C 1.38418 * 122.54249 * 89.99658 * 14 13 12 16 16 C 1.33391 * 114.92567 * 179.97438 * 15 14 13 17 17 S 1.75881 * 109.59202 * 0.02562 * 16 15 14 18 18 C 1.33390 * 122.53762 * 269.71294 * 14 13 12 19 19 C 1.47486 * 87.83624 * 332.95820 * 12 11 9 20 20 H 0.96996 * 119.99713 * 359.97438 * 1 2 3 21 21 H 0.96692 * 114.00048 * 313.07558 * 10 9 7 22 22 H 1.09002 * 113.47888 * 24.90211 * 11 9 7 23 23 H 1.09003 * 113.47419 * 254.49544 * 11 9 7 24 24 H 1.08996 * 109.47219 * 289.99944 * 13 12 11 25 25 H 1.09003 * 109.47111 * 50.00095 * 13 12 11 26 26 H 1.08002 * 122.53959 * 359.95989 * 15 14 13 27 27 H 1.08000 * 125.20576 * 179.97438 * 16 15 14 28 28 H 1.08002 * 125.20357 * 0.02562 * 18 14 13 29 29 H 1.09001 * 113.47573 * 141.77409 * 19 12 11 30 30 H 1.08996 * 113.47515 * 272.18523 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.1914 -2.5422 -0.9582 11 6 2.1499 -3.7437 -0.0005 12 7 1.2084 -4.3600 0.9528 13 6 1.9274 -5.0888 2.0062 14 6 0.9592 -5.4933 3.0878 15 6 0.2782 -6.6981 3.0651 16 6 -0.5402 -6.9009 4.0988 17 16 -0.4761 -5.5169 5.1821 18 6 0.6976 -4.7197 4.1425 19 6 0.8556 -2.9990 1.3981 20 1 -0.4849 0.8400 0.0004 21 1 -0.3730 -1.7571 -0.9557 22 1 3.1393 -3.5649 0.4204 23 1 2.1874 -4.2522 -0.9640 24 1 2.3898 -5.9795 1.5810 25 1 2.6988 -4.4463 2.4308 26 1 0.4000 -7.4194 2.2705 27 1 -1.1496 -7.7801 4.2473 28 1 1.1374 -3.7509 4.3285 29 1 -0.2045 -2.8757 1.6197 30 1 1.4990 -2.6218 2.1930 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225566939.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:13 Heat of formation + Delta-G solvation = 24.485387 kcal Electronic energy + Delta-G solvation = -14894.685810 eV Core-core repulsion = 12397.038911 eV Total energy + Delta-G solvation = -2497.646899 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.42674 -37.49777 -34.19965 -32.05468 -30.38803 -28.14885 -25.99081 -24.80705 -23.41795 -21.67778 -18.66271 -18.50633 -17.40308 -17.11863 -15.25399 -15.04574 -14.99370 -14.18769 -13.94217 -13.15544 -12.86338 -12.71183 -12.54627 -12.00639 -11.93305 -11.55470 -11.41636 -11.06439 -10.82176 -10.73172 -10.48667 -10.22486 -9.97572 -9.32060 -8.69716 -8.56366 -8.28126 -8.05061 -7.86701 -6.27422 -4.37245 1.22430 1.86689 2.17426 2.94957 3.17648 3.26629 3.30295 4.24441 4.92641 5.04405 5.06861 5.28958 5.56644 5.63729 5.80584 5.93239 5.98346 6.09350 6.19467 6.32629 6.41904 6.61567 6.70030 6.75626 7.07069 7.17948 7.35678 7.76295 7.94928 8.03813 8.65325 9.32978 9.69526 10.78566 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.035534 B = 0.006261 C = 0.005851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.790393 B = 4471.076852 C = 4784.255621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.070 3.930 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.534 4.534 8 H 0.067 0.933 9 C 0.247 3.753 10 O -0.570 6.570 11 C 0.002 3.998 12 N -0.465 5.465 13 C 0.073 3.927 14 C -0.084 4.084 15 C -0.112 4.112 16 C -0.220 4.220 17 S 0.071 5.929 18 C -0.201 4.201 19 C -0.016 4.016 20 H 0.271 0.729 21 H 0.390 0.610 22 H 0.064 0.936 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.045 0.955 26 H 0.139 0.861 27 H 0.160 0.840 28 H 0.161 0.839 29 H 0.066 0.934 30 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.073 -8.871 7.900 11.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.208 1.208 7 C -0.572 4.572 8 H 0.085 0.915 9 C 0.205 3.795 10 O -0.382 6.382 11 C -0.126 4.126 12 N -0.187 5.187 13 C -0.057 4.057 14 C -0.096 4.096 15 C -0.143 4.143 16 C -0.356 4.356 17 S 0.334 5.666 18 C -0.337 4.337 19 C -0.145 4.145 20 H 0.081 0.919 21 H 0.246 0.754 22 H 0.082 0.918 23 H 0.090 0.910 24 H 0.094 0.906 25 H 0.063 0.937 26 H 0.157 0.843 27 H 0.178 0.822 28 H 0.179 0.821 29 H 0.085 0.915 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.059 -9.452 8.928 13.002 hybrid contribution 1.442 1.531 -0.654 2.203 sum 1.384 -7.921 8.274 11.538 Atomic orbital electron populations 1.69311 1.06119 1.27718 1.50672 1.25074 0.94979 0.99698 0.93425 0.86352 0.80057 0.82686 0.77825 1.19573 1.20619 1.20773 1.21618 0.93688 0.90529 1.51348 0.91507 1.19402 0.85078 0.90583 0.84465 1.86026 1.45029 1.48043 1.59115 1.24092 0.95288 0.96535 0.96721 1.69042 1.26531 1.13914 1.09259 1.21356 0.93370 0.99514 0.91492 1.18865 1.00437 0.94379 0.95954 1.20073 0.97564 0.97878 0.98807 1.25477 1.07060 1.02871 1.00143 1.84064 1.42842 1.12439 1.27273 1.25482 1.04439 1.04320 0.99428 1.24669 1.00697 0.87569 1.01602 0.91873 0.75442 0.91794 0.91011 0.90643 0.93712 0.84342 0.82216 0.82113 0.91527 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.18 11.02 55.43 0.61 -23.57 16 2 C 0.07 1.85 5.40 -17.82 -0.10 1.75 16 3 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.53 -14.21 8.69 -34.44 -0.30 -14.51 16 8 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 9 C 0.25 6.30 1.57 -91.14 -0.14 6.16 16 10 O -0.57 -15.70 13.54 -35.23 -0.48 -16.18 16 11 C 0.00 0.05 7.12 -7.54 -0.05 0.00 16 12 N -0.47 -9.85 6.40 -245.82 -1.57 -11.42 16 13 C 0.07 1.27 5.09 -4.98 -0.03 1.25 16 14 C -0.08 -1.37 5.08 -106.25 -0.54 -1.91 16 15 C -0.11 -1.64 9.98 -41.21 -0.41 -2.05 16 16 C -0.22 -2.87 11.23 29.04 0.33 -2.54 16 17 S 0.07 0.95 23.34 -107.50 -2.51 -1.56 16 18 C -0.20 -3.13 10.52 29.04 0.31 -2.82 16 19 C -0.02 -0.37 6.36 -7.44 -0.05 -0.42 16 20 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 21 H 0.39 10.90 6.33 45.56 0.29 11.19 16 22 H 0.06 1.30 7.72 -51.93 -0.40 0.90 16 23 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 24 H 0.08 1.17 8.13 -51.93 -0.42 0.75 16 25 H 0.04 0.76 7.54 -51.93 -0.39 0.37 16 26 H 0.14 1.83 8.06 -52.49 -0.42 1.41 16 27 H 0.16 1.63 8.06 -52.49 -0.42 1.20 16 28 H 0.16 2.43 8.06 -52.49 -0.42 2.01 16 29 H 0.07 1.67 8.14 -51.93 -0.42 1.25 16 30 H 0.06 1.27 7.66 -51.93 -0.40 0.87 16 LS Contribution 270.16 15.07 4.07 4.07 Total: -1.00 -28.04 270.16 -8.87 -36.91 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -2.98 Total: 11.58 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -0.98 Total: -15.11 kcal Atomic # 7 Polarization: -34.03 SS G_CDS: -0.96 Total: -34.99 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.48 Total: -16.18 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.51 Total: -1.56 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.04 -8.87 -36.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225566939.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.391 kcal (2) G-P(sol) polarization free energy of solvation -28.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds