Wall clock time and date at job start Sun Mar 29 2020 22:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86795 * 119.99682 * 2 1 4 4 H 1.48500 * 109.47200 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47340 * 300.00167 * 3 2 1 6 6 H 1.48496 * 109.47084 * 60.00402 * 3 2 1 7 7 C 1.37879 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99762 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99684 * 359.97438 * 7 2 1 10 10 O 1.42895 * 113.38463 * 46.92306 * 9 7 2 11 11 C 1.53517 * 114.16583 * 180.02562 * 9 7 2 12 12 N 1.47479 * 87.99753 * 139.69853 * 11 9 7 13 13 C 1.46893 * 111.00130 * 221.26429 * 12 11 9 14 14 C 1.50699 * 109.47365 * 170.00095 * 13 12 11 15 15 C 1.38418 * 122.54249 * 89.99658 * 14 13 12 16 16 C 1.33391 * 114.92567 * 179.97438 * 15 14 13 17 17 S 1.75881 * 109.59202 * 0.02562 * 16 15 14 18 18 C 1.33390 * 122.53762 * 269.71294 * 14 13 12 19 19 C 1.47486 * 87.83624 * 332.95820 * 12 11 9 20 20 H 0.96996 * 119.99713 * 359.97438 * 1 2 3 21 21 H 0.96692 * 114.00048 * 313.07558 * 10 9 7 22 22 H 1.09002 * 113.47888 * 24.90211 * 11 9 7 23 23 H 1.09003 * 113.47419 * 254.49544 * 11 9 7 24 24 H 1.08996 * 109.47219 * 289.99944 * 13 12 11 25 25 H 1.09003 * 109.47111 * 50.00095 * 13 12 11 26 26 H 1.08002 * 122.53959 * 359.95989 * 15 14 13 27 27 H 1.08000 * 125.20576 * 179.97438 * 16 15 14 28 28 H 1.08002 * 125.20357 * 0.02562 * 18 14 13 29 29 H 1.09001 * 113.47573 * 141.77409 * 19 12 11 30 30 H 1.08996 * 113.47515 * 272.18523 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.1914 -2.5422 -0.9582 11 6 2.1499 -3.7437 -0.0005 12 7 1.2084 -4.3600 0.9528 13 6 1.9274 -5.0888 2.0062 14 6 0.9592 -5.4933 3.0878 15 6 0.2782 -6.6981 3.0651 16 6 -0.5402 -6.9009 4.0988 17 16 -0.4761 -5.5169 5.1821 18 6 0.6976 -4.7197 4.1425 19 6 0.8556 -2.9990 1.3981 20 1 -0.4849 0.8400 0.0004 21 1 -0.3730 -1.7571 -0.9557 22 1 3.1393 -3.5649 0.4204 23 1 2.1874 -4.2522 -0.9640 24 1 2.3898 -5.9795 1.5810 25 1 2.6988 -4.4463 2.4308 26 1 0.4000 -7.4194 2.2705 27 1 -1.1496 -7.7801 4.2473 28 1 1.1374 -3.7509 4.3285 29 1 -0.2045 -2.8757 1.6197 30 1 1.4990 -2.6218 2.1930 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225566939.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:12 Heat of formation + Delta-G solvation = 3.888813 kcal Electronic energy + Delta-G solvation = -14895.578944 eV Core-core repulsion = 12397.038911 eV Total energy + Delta-G solvation = -2498.540034 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.10574 -38.79435 -36.11831 -34.10247 -31.76531 -29.63377 -27.75924 -26.61180 -24.89049 -23.09157 -20.51414 -19.77093 -19.19765 -18.38891 -17.11275 -16.79928 -16.43074 -15.85450 -15.70684 -14.69498 -14.33831 -14.06285 -13.87196 -13.63263 -13.43508 -13.30762 -13.02678 -12.79319 -12.42108 -12.36063 -12.21523 -11.92773 -11.55940 -11.18002 -10.66197 -10.09610 -9.78055 -9.60711 -9.25084 -8.25811 -6.43716 0.10297 0.78004 1.07527 1.40861 1.44044 1.55320 1.77869 2.36839 2.95190 3.34954 3.85729 3.99909 4.11053 4.24293 4.37759 4.45421 4.51868 4.61494 4.62111 4.79661 4.91650 5.09035 5.14899 5.38344 5.40714 5.52655 5.61106 5.75085 5.95997 6.32428 6.62873 7.29593 7.55447 8.79635 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.035534 B = 0.006261 C = 0.005851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.790393 B = 4471.076852 C = 4784.255621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.025 3.975 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.555 4.555 8 H 0.068 0.932 9 C 0.216 3.784 10 O -0.584 6.584 11 C 0.013 3.987 12 N -0.470 5.470 13 C 0.074 3.926 14 C -0.100 4.100 15 C -0.134 4.134 16 C -0.210 4.210 17 S 0.100 5.900 18 C -0.224 4.224 19 C 0.001 3.999 20 H 0.274 0.726 21 H 0.383 0.617 22 H 0.081 0.919 23 H 0.073 0.927 24 H 0.095 0.905 25 H 0.048 0.952 26 H 0.151 0.849 27 H 0.192 0.808 28 H 0.157 0.843 29 H 0.040 0.960 30 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.561 -9.516 8.744 13.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.175 4.175 3 Si 0.794 3.206 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.593 4.593 8 H 0.086 0.914 9 C 0.175 3.825 10 O -0.396 6.396 11 C -0.116 4.116 12 N -0.192 5.192 13 C -0.056 4.056 14 C -0.113 4.113 15 C -0.164 4.164 16 C -0.345 4.345 17 S 0.364 5.636 18 C -0.360 4.360 19 C -0.129 4.129 20 H 0.084 0.916 21 H 0.238 0.762 22 H 0.099 0.901 23 H 0.091 0.909 24 H 0.113 0.887 25 H 0.066 0.934 26 H 0.168 0.832 27 H 0.209 0.791 28 H 0.174 0.826 29 H 0.059 0.941 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.437 -10.118 9.779 14.078 hybrid contribution 1.245 1.671 -0.869 2.258 sum 1.682 -8.447 8.911 12.393 Atomic orbital electron populations 1.69391 1.07324 1.28612 1.50908 1.25853 0.95783 1.02894 0.92927 0.85331 0.78948 0.78503 0.77780 1.18968 1.20373 1.20344 1.21877 0.93908 0.91533 1.51972 0.91393 1.19813 0.85478 0.91974 0.85266 1.86006 1.45630 1.47744 1.60177 1.24000 0.95526 0.94794 0.97279 1.68939 1.27243 1.12731 1.10312 1.21389 0.93535 0.99706 0.90956 1.18934 1.01012 0.95440 0.95891 1.20214 0.98348 0.97775 1.00043 1.25902 1.06127 1.03418 0.99027 1.83958 1.41305 1.12030 1.26353 1.25630 1.05519 1.04559 1.00337 1.24356 0.98987 0.89078 1.00433 0.91601 0.76220 0.90132 0.90878 0.88653 0.93425 0.83162 0.79102 0.82550 0.94125 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.15 11.02 21.45 0.24 -49.91 16 2 C 0.02 1.31 5.40 84.65 0.46 1.76 16 3 Si 0.97 41.41 29.54 68.60 2.03 43.43 16 4 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 6 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.55 -29.61 8.69 25.60 0.22 -29.38 16 8 H 0.07 3.51 7.81 -2.91 -0.02 3.49 16 9 C 0.22 11.12 1.57 -11.13 -0.02 11.10 16 10 O -0.58 -32.82 13.54 -148.98 -2.02 -34.83 16 11 C 0.01 0.55 7.12 83.58 0.59 1.15 16 12 N -0.47 -19.64 6.40 -931.96 -5.97 -25.61 16 13 C 0.07 2.48 5.09 85.56 0.44 2.92 16 14 C -0.10 -3.14 5.08 -20.92 -0.11 -3.24 16 15 C -0.13 -3.64 9.98 21.22 0.21 -3.43 16 16 C -0.21 -4.89 11.23 66.72 0.75 -4.14 16 17 S 0.10 2.49 23.34 -56.49 -1.32 1.17 16 18 C -0.22 -6.81 10.52 66.72 0.70 -6.11 16 19 C 0.00 0.06 6.36 83.64 0.53 0.59 16 20 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 21 H 0.38 22.07 6.33 -74.06 -0.47 21.60 16 22 H 0.08 3.17 7.72 -2.39 -0.02 3.16 16 23 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 24 H 0.10 2.78 8.13 -2.39 -0.02 2.76 16 25 H 0.05 1.56 7.54 -2.39 -0.02 1.54 16 26 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 27 H 0.19 3.15 8.06 -2.91 -0.02 3.13 16 28 H 0.16 4.74 8.06 -2.91 -0.02 4.72 16 29 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.06 2.67 7.66 -2.39 -0.02 2.65 16 Total: -1.00 -59.06 270.16 -2.59 -61.64 By element: Atomic # 1 Polarization: 32.21 SS G_CDS: 0.68 Total: 32.88 kcal Atomic # 6 Polarization: -32.57 SS G_CDS: 3.78 Total: -28.79 kcal Atomic # 7 Polarization: -69.79 SS G_CDS: -5.73 Total: -75.52 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -2.02 Total: -34.83 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.43 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -1.32 Total: 1.17 kcal Total: -59.06 -2.59 -61.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225566939.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.532 kcal (2) G-P(sol) polarization free energy of solvation -59.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds