Wall clock time and date at job start Sun Mar 29 2020 22:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99923 * 2 1 4 4 H 1.48499 * 109.47135 * 269.99694 * 3 2 1 5 5 H 1.48500 * 109.46751 * 29.99670 * 3 2 1 6 6 H 1.48503 * 109.47215 * 149.99504 * 3 2 1 7 7 C 1.37879 * 120.00502 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00139 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99824 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47138 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99665 * 180.28062 * 10 9 7 12 12 O 1.21603 * 120.00257 * 359.72088 * 11 10 9 13 13 C 1.47452 * 119.99473 * 179.72398 * 11 10 9 14 14 C 1.39806 * 120.11480 * 359.72163 * 13 11 10 15 15 C 1.37611 * 119.93659 * 179.78974 * 14 13 11 16 16 C 1.39095 * 120.15660 * 0.46548 * 15 14 13 17 17 O 1.35711 * 119.88658 * 179.76731 * 16 15 14 18 18 C 1.38833 * 120.22682 * 359.78431 * 16 15 14 19 19 C 1.38062 * 120.06250 * 359.97438 * 18 16 15 20 20 F 1.35102 * 120.07776 * 179.97438 * 19 18 16 21 21 H 0.96997 * 120.00009 * 0.02562 * 1 2 3 22 22 H 1.09009 * 109.46601 * 59.99932 * 9 7 2 23 23 H 1.08998 * 109.47035 * 300.00439 * 9 7 2 24 24 H 0.97001 * 119.99790 * 359.97438 * 10 9 7 25 25 H 1.08003 * 120.03319 * 0.02562 * 14 13 11 26 26 H 1.08000 * 119.91794 * 180.21012 * 15 14 13 27 27 H 0.96701 * 114.00117 * 270.02504 * 17 16 15 28 28 H 1.07998 * 119.97127 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 1.7540 -4.8833 -0.0037 12 8 0.5584 -5.1056 -0.0046 13 6 2.7123 -6.0040 -0.0086 14 6 4.0873 -5.7511 -0.0135 15 6 4.9784 -6.7997 -0.0137 16 6 4.5144 -8.1110 -0.0188 17 8 5.3980 -9.1410 -0.0238 18 6 3.1504 -8.3697 -0.0193 19 6 2.2482 -7.3247 -0.0141 20 9 0.9208 -7.5761 -0.0151 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8898 23 1 0.6241 -2.5567 0.8902 24 1 3.1569 -3.4353 0.0021 25 1 4.4498 -4.7337 -0.0132 26 1 6.0405 -6.6040 -0.0140 27 1 5.6538 -9.4355 -0.9086 28 1 2.7947 -9.3895 -0.0229 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226406594.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:24 Heat of formation + Delta-G solvation = -102.681123 kcal Electronic energy + Delta-G solvation = -16089.004768 eV Core-core repulsion = 13019.630339 eV Total energy + Delta-G solvation = -3069.374429 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.74868 -39.98623 -38.65395 -36.47241 -34.29428 -32.45780 -30.93236 -30.15245 -27.19083 -23.94851 -23.10456 -22.12749 -20.07428 -18.92466 -17.96598 -16.82457 -16.42814 -16.00260 -15.61191 -15.04365 -14.98582 -14.66049 -14.22491 -14.12309 -13.74917 -13.16320 -12.59400 -12.17887 -11.99170 -11.87983 -11.65879 -11.03173 -10.99968 -10.91386 -10.34903 -9.43935 -9.24606 -9.16777 -8.79957 -8.74049 -7.93654 -6.19330 -4.26881 0.59006 0.99769 2.91694 3.22540 3.28579 3.30925 3.66595 3.88789 3.92564 4.30485 4.32890 4.55714 4.78740 5.02744 5.16868 5.19679 5.41002 5.78629 5.88461 5.98418 6.06513 6.50497 7.25245 7.27944 7.33299 7.47534 7.60882 7.92679 8.51982 8.71877 8.98449 9.39507 10.90853 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.040310 B = 0.005219 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.449084 B = 5363.437968 C = 6040.164333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.703 5.703 11 C 0.537 3.463 12 O -0.539 6.539 13 C -0.169 4.169 14 C -0.043 4.043 15 C -0.164 4.164 16 C 0.151 3.849 17 O -0.495 6.495 18 C -0.196 4.196 19 C 0.172 3.828 20 F -0.111 7.111 21 H 0.267 0.733 22 H 0.030 0.970 23 H 0.030 0.970 24 H 0.390 0.610 25 H 0.144 0.856 26 H 0.140 0.860 27 H 0.396 0.604 28 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.827 -14.338 -1.739 18.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.129 3.871 10 N -0.351 5.351 11 C 0.322 3.678 12 O -0.418 6.418 13 C -0.173 4.173 14 C -0.062 4.062 15 C -0.183 4.183 16 C 0.105 3.895 17 O -0.306 6.306 18 C -0.216 4.216 19 C 0.151 3.849 20 F -0.089 7.089 21 H 0.076 0.924 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.224 0.776 25 H 0.162 0.838 26 H 0.158 0.842 27 H 0.253 0.747 28 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 10.677 -14.277 -1.126 17.864 hybrid contribution 0.722 0.867 -0.492 1.231 sum 11.399 -13.410 -1.618 17.674 Atomic orbital electron populations 1.69972 1.06124 1.27394 1.48645 1.24954 0.94924 0.99479 0.94625 0.86399 0.79609 0.82574 0.78233 1.20432 1.20972 1.19719 1.21199 0.93256 0.90353 1.53549 0.91843 1.19181 0.88243 0.81657 0.98052 1.46402 1.11246 1.05764 1.71706 1.17919 0.87823 0.83191 0.78858 1.90815 1.15762 1.84706 1.50496 1.20508 0.95092 0.93357 1.08330 1.21185 0.90790 1.00063 0.94144 1.21380 1.00999 0.91382 1.04547 1.18263 0.87322 0.87000 0.96868 1.84758 1.61877 1.50122 1.33817 1.21314 0.92575 0.99659 1.08014 1.17459 0.78269 0.91948 0.97183 1.91614 1.30097 1.94578 1.92571 0.92370 0.95215 0.95204 0.77644 0.83795 0.84203 0.74698 0.83711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.95 13.29 55.43 0.74 -25.21 15 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 15 3 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 15 4 H -0.28 -6.26 7.11 56.52 0.40 -5.85 15 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 15 7 C -0.55 -14.64 9.28 -34.44 -0.32 -14.96 15 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 15 9 C 0.25 6.60 5.43 -5.19 -0.03 6.57 15 10 N -0.70 -14.93 5.50 -62.55 -0.34 -15.27 15 11 C 0.54 11.36 7.76 -12.51 -0.10 11.26 15 12 O -0.54 -13.67 15.33 5.27 0.08 -13.59 15 13 C -0.17 -2.74 5.88 -104.90 -0.62 -3.36 15 14 C -0.04 -0.53 9.53 -39.22 -0.37 -0.90 15 15 C -0.16 -1.66 9.96 -39.49 -0.39 -2.06 15 16 C 0.15 1.56 6.71 -39.04 -0.26 1.30 15 17 O -0.49 -4.08 13.48 -18.84 -0.25 -4.34 15 18 C -0.20 -2.33 9.95 -39.43 -0.39 -2.72 15 19 C 0.17 2.68 7.28 -38.99 -0.28 2.39 15 20 F -0.11 -2.00 15.54 2.25 0.03 -1.97 15 21 H 0.27 7.33 8.31 -40.82 -0.34 6.99 15 22 H 0.03 0.87 8.14 -51.92 -0.42 0.45 15 23 H 0.03 0.88 8.14 -51.93 -0.42 0.45 15 24 H 0.39 6.88 6.34 -40.82 -0.26 6.62 15 25 H 0.14 1.51 6.39 -52.48 -0.34 1.17 15 26 H 0.14 1.05 8.06 -52.49 -0.42 0.63 15 27 H 0.40 1.23 9.06 45.56 0.41 1.64 15 28 H 0.15 1.43 8.06 -52.49 -0.42 1.00 15 LS Contribution 261.33 15.07 3.94 3.94 Total: -1.00 -33.94 261.33 -5.10 -39.04 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -1.41 Total: 2.60 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -2.86 Total: -0.80 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.39 Total: -40.48 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.17 Total: -17.93 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.03 Total: -1.97 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -33.94 -5.10 -39.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226406594.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.644 kcal (2) G-P(sol) polarization free energy of solvation -33.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds