Wall clock time and date at job start Sun Mar 29 2020 22:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99923 * 2 1 4 4 H 1.48499 * 109.47135 * 269.99694 * 3 2 1 5 5 H 1.48500 * 109.46751 * 29.99670 * 3 2 1 6 6 H 1.48503 * 109.47215 * 149.99504 * 3 2 1 7 7 C 1.37879 * 120.00502 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00139 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99824 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47138 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99665 * 180.28062 * 10 9 7 12 12 O 1.21603 * 120.00257 * 359.72088 * 11 10 9 13 13 C 1.47452 * 119.99473 * 179.72398 * 11 10 9 14 14 C 1.39806 * 120.11480 * 359.72163 * 13 11 10 15 15 C 1.37611 * 119.93659 * 179.78974 * 14 13 11 16 16 C 1.39095 * 120.15660 * 0.46548 * 15 14 13 17 17 O 1.35711 * 119.88658 * 179.76731 * 16 15 14 18 18 C 1.38833 * 120.22682 * 359.78431 * 16 15 14 19 19 C 1.38062 * 120.06250 * 359.97438 * 18 16 15 20 20 F 1.35102 * 120.07776 * 179.97438 * 19 18 16 21 21 H 0.96997 * 120.00009 * 0.02562 * 1 2 3 22 22 H 1.09009 * 109.46601 * 59.99932 * 9 7 2 23 23 H 1.08998 * 109.47035 * 300.00439 * 9 7 2 24 24 H 0.97001 * 119.99790 * 359.97438 * 10 9 7 25 25 H 1.08003 * 120.03319 * 0.02562 * 14 13 11 26 26 H 1.08000 * 119.91794 * 180.21012 * 15 14 13 27 27 H 0.96701 * 114.00117 * 270.02504 * 17 16 15 28 28 H 1.07998 * 119.97127 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 1.7540 -4.8833 -0.0037 12 8 0.5584 -5.1056 -0.0046 13 6 2.7123 -6.0040 -0.0086 14 6 4.0873 -5.7511 -0.0135 15 6 4.9784 -6.7997 -0.0137 16 6 4.5144 -8.1110 -0.0188 17 8 5.3980 -9.1410 -0.0238 18 6 3.1504 -8.3697 -0.0193 19 6 2.2482 -7.3247 -0.0141 20 9 0.9208 -7.5761 -0.0151 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8898 23 1 0.6241 -2.5567 0.8902 24 1 3.1569 -3.4353 0.0021 25 1 4.4498 -4.7337 -0.0132 26 1 6.0405 -6.6040 -0.0140 27 1 5.6538 -9.4355 -0.9086 28 1 2.7947 -9.3895 -0.0229 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226406594.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:24 Heat of formation + Delta-G solvation = -129.829935 kcal Electronic energy + Delta-G solvation = -16090.182029 eV Core-core repulsion = 13019.630339 eV Total energy + Delta-G solvation = -3070.551690 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.00099 -41.15745 -40.01848 -37.42704 -36.25192 -34.44088 -31.99637 -31.29740 -29.11718 -25.45649 -24.36583 -23.52153 -21.70046 -19.85182 -19.48332 -18.08304 -17.82342 -17.40948 -16.91140 -16.74769 -16.32463 -16.00318 -15.84247 -15.46286 -14.79155 -14.57665 -14.06933 -14.03638 -13.76191 -13.01813 -12.92778 -12.82737 -12.70424 -12.22836 -11.77739 -11.50576 -10.99745 -10.82354 -10.16829 -10.00047 -9.68565 -8.29860 -6.47343 -0.47034 0.04700 1.43995 1.46864 1.58054 1.70294 2.24161 2.46335 2.53994 2.84881 3.05360 3.31996 3.62675 3.74396 3.95607 4.15693 4.54159 4.77670 4.91971 5.04472 5.08876 5.15331 5.19286 5.41148 5.56893 5.64201 5.80800 6.61572 6.77097 6.77669 7.19595 7.35631 8.82603 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.040310 B = 0.005219 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.449084 B = 5363.437968 C = 6040.164333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.988 3.012 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.252 1.252 7 C -0.556 4.556 8 H 0.089 0.911 9 C 0.265 3.735 10 N -0.695 5.695 11 C 0.534 3.466 12 O -0.595 6.595 13 C -0.199 4.199 14 C -0.033 4.033 15 C -0.149 4.149 16 C 0.178 3.822 17 O -0.494 6.494 18 C -0.192 4.192 19 C 0.146 3.854 20 F -0.137 7.137 21 H 0.269 0.731 22 H -0.010 1.010 23 H -0.011 1.011 24 H 0.410 0.590 25 H 0.163 0.837 26 H 0.179 0.821 27 H 0.424 0.576 28 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.089 -14.836 -1.863 21.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.811 3.189 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.176 1.176 7 C -0.594 4.594 8 H 0.107 0.893 9 C 0.143 3.857 10 N -0.345 5.345 11 C 0.323 3.677 12 O -0.477 6.477 13 C -0.203 4.203 14 C -0.051 4.051 15 C -0.167 4.167 16 C 0.132 3.868 17 O -0.309 6.309 18 C -0.211 4.211 19 C 0.125 3.875 20 F -0.116 7.116 21 H 0.078 0.922 22 H 0.007 0.993 23 H 0.007 0.993 24 H 0.247 0.753 25 H 0.180 0.820 26 H 0.197 0.803 27 H 0.286 0.714 28 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 15.013 -14.817 -1.272 21.132 hybrid contribution -0.502 0.826 -0.465 1.073 sum 14.511 -13.991 -1.737 20.232 Atomic orbital electron populations 1.70147 1.08412 1.28656 1.49826 1.26114 0.95782 1.04061 0.93745 0.85110 0.78520 0.76653 0.78647 1.19510 1.21130 1.17589 1.21605 0.94468 0.90204 1.53124 0.89324 1.18627 0.88674 0.84103 0.94316 1.46058 1.11446 1.04925 1.72070 1.18714 0.88100 0.84065 0.76870 1.90770 1.18593 1.85555 1.52832 1.20138 0.95717 0.91502 1.12980 1.21375 0.88955 1.01891 0.92912 1.21736 1.02388 0.90336 1.02219 1.18303 0.86851 0.87835 0.93840 1.84707 1.60817 1.49217 1.36169 1.21488 0.92871 0.99460 1.07248 1.17859 0.77800 0.92828 0.99004 1.91541 1.32215 1.94731 1.93087 0.92214 0.99254 0.99330 0.75286 0.81998 0.80320 0.71410 0.81825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.58 13.29 21.45 0.28 -56.29 15 2 C 0.00 0.14 5.46 84.66 0.46 0.60 15 3 Si 0.99 41.88 29.54 68.60 2.03 43.90 15 4 H -0.27 -11.02 7.11 99.48 0.71 -10.31 15 5 H -0.29 -12.09 7.11 99.48 0.71 -11.38 15 6 H -0.25 -9.82 7.11 99.48 0.71 -9.11 15 7 C -0.56 -30.15 9.28 25.60 0.24 -29.91 15 8 H 0.09 4.25 7.60 -2.91 -0.02 4.22 15 9 C 0.27 14.87 5.43 85.63 0.46 15.33 15 10 N -0.69 -30.48 5.50 -470.07 -2.58 -33.06 15 11 C 0.53 23.73 7.76 86.67 0.67 24.40 15 12 O -0.59 -32.58 15.33 -4.04 -0.06 -32.64 15 13 C -0.20 -6.48 5.88 -20.05 -0.12 -6.60 15 14 C -0.03 -0.71 9.53 22.50 0.21 -0.50 15 15 C -0.15 -2.28 9.96 22.33 0.22 -2.06 15 16 C 0.18 2.89 6.71 22.62 0.15 3.04 15 17 O -0.49 -5.45 13.48 -90.32 -1.22 -6.67 15 18 C -0.19 -4.10 9.95 22.37 0.22 -3.88 15 19 C 0.15 4.55 7.28 22.65 0.16 4.71 15 20 F -0.14 -5.27 15.54 44.97 0.70 -4.57 15 21 H 0.27 15.22 8.31 -92.71 -0.77 14.45 15 22 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 15 23 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 15 24 H 0.41 14.21 6.34 -92.71 -0.59 13.63 15 25 H 0.16 2.85 6.39 -2.91 -0.02 2.83 15 26 H 0.18 1.48 8.06 -2.91 -0.02 1.45 15 27 H 0.42 0.17 9.06 -74.06 -0.67 -0.50 15 28 H 0.16 2.81 8.06 -2.91 -0.02 2.78 15 Total: -1.00 -79.34 261.33 1.81 -77.53 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -0.04 Total: 6.65 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 2.70 Total: 5.15 kcal Atomic # 7 Polarization: -87.06 SS G_CDS: -2.30 Total: -89.36 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: -1.28 Total: -39.31 kcal Atomic # 9 Polarization: -5.27 SS G_CDS: 0.70 Total: -4.57 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.90 kcal Total: -79.34 1.81 -77.53 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226406594.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.297 kcal (2) G-P(sol) polarization free energy of solvation -79.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds