Wall clock time and date at job start Sun Mar 29 2020 22:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36916 * 119.99906 * 2 1 4 4 H 1.07997 * 120.00159 * 193.60510 * 3 2 1 5 5 C 1.39011 * 119.99838 * 13.60470 * 3 2 1 6 6 N 1.31393 * 120.00300 * 28.71867 * 5 3 2 7 7 Si 1.86800 * 119.99897 * 208.71405 * 5 3 2 8 8 H 1.48504 * 109.46790 * 94.99935 * 7 5 3 9 9 H 1.48502 * 109.47262 * 214.99551 * 7 5 3 10 10 H 1.48492 * 109.47332 * 334.99919 * 7 5 3 11 11 C 1.34769 * 119.99855 * 179.97438 * 2 1 3 12 12 O 1.21639 * 119.99841 * 184.67428 * 11 2 1 13 13 C 1.47357 * 120.00503 * 4.66886 * 11 2 1 14 14 C 1.39865 * 120.11331 * 313.22130 * 13 11 2 15 15 C 1.37594 * 119.93018 * 180.29550 * 14 13 11 16 16 C 1.39115 * 120.16235 * 359.95359 * 15 14 13 17 17 O 1.35713 * 119.88408 * 180.02562 * 16 15 14 18 18 C 1.38855 * 120.23367 * 0.04471 * 16 15 14 19 19 C 1.38040 * 120.06954 * 359.97438 * 18 16 15 20 20 F 1.35099 * 120.08050 * 179.97438 * 19 18 16 21 21 H 1.08997 * 109.47747 * 267.88871 * 1 2 3 22 22 H 1.09000 * 109.47280 * 27.89454 * 1 2 3 23 23 H 1.08998 * 109.47006 * 147.89133 * 1 2 3 24 24 H 0.96997 * 120.00404 * 180.02562 * 6 5 3 25 25 H 1.08001 * 120.03728 * 0.24548 * 14 13 11 26 26 H 1.07998 * 119.92102 * 179.97438 * 15 14 13 27 27 H 0.96701 * 114.00019 * 270.02085 * 17 16 15 28 28 H 1.08005 * 119.96377 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1857 0.0000 4 1 3.2068 1.1989 -0.2200 5 6 1.4837 2.3727 0.2832 6 7 0.4283 2.3634 1.0658 7 14 2.0895 3.9810 -0.4488 8 1 1.3383 4.2708 -1.6966 9 1 1.8738 5.0807 0.5255 10 1 3.5377 3.8700 -0.7574 11 6 2.1388 -1.1672 0.0005 12 8 3.3522 -1.1689 0.0864 13 6 1.4058 -2.4413 -0.1028 14 6 0.2782 -2.6686 0.6929 15 6 -0.3999 -3.8621 0.5977 16 6 0.0328 -4.8431 -0.2887 17 8 -0.6406 -6.0180 -0.3783 18 6 1.1514 -4.6246 -1.0818 19 6 1.8391 -3.4309 -0.9939 20 9 2.9278 -3.2182 -1.7651 21 1 -0.3634 -0.0379 1.0269 22 1 -0.3634 0.9082 -0.4808 23 1 -0.3633 -0.8705 -0.5462 24 1 -0.0365 3.1916 1.2631 25 1 -0.0595 -1.9085 1.3818 26 1 -1.2703 -4.0376 1.2125 27 1 -0.3213 -6.7014 0.2267 28 1 1.4832 -5.3890 -1.7689 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226427066.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:24 Heat of formation + Delta-G solvation = -105.054838 kcal Electronic energy + Delta-G solvation = -16787.327045 eV Core-core repulsion = 13717.849684 eV Total energy + Delta-G solvation = -3069.477361 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.97072 -41.10130 -39.87850 -37.33477 -36.77423 -33.86524 -31.86586 -31.01460 -28.26002 -26.77467 -24.31756 -23.82618 -21.34928 -19.71698 -19.08271 -18.32064 -17.71351 -17.36453 -17.06234 -16.63694 -16.08835 -15.84002 -15.72845 -15.27657 -14.84834 -14.60352 -13.86448 -13.62375 -13.42154 -13.34735 -12.96553 -12.68965 -12.55641 -12.33187 -12.15794 -11.69502 -11.04149 -10.59141 -10.00613 -9.87647 -9.63450 -8.54012 -5.97235 -0.23718 0.10314 1.32550 1.40185 1.52489 1.86381 2.22245 2.44796 2.83263 2.93084 3.04782 3.42537 3.72338 3.83196 4.04181 4.24469 4.48440 4.64728 4.85127 4.87570 4.99107 5.16451 5.19447 5.21433 5.39764 5.65999 5.95436 6.36088 6.82395 7.04739 7.31040 7.90948 8.51622 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.040884 B = 0.006945 C = 0.006205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.700625 B = 4030.972805 C = 4511.458677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.437 5.437 3 C -0.363 4.363 4 H 0.072 0.928 5 C 0.013 3.987 6 N -0.868 5.868 7 Si 0.984 3.016 8 H -0.262 1.262 9 H -0.268 1.268 10 H -0.277 1.277 11 C 0.455 3.545 12 O -0.637 6.637 13 C -0.168 4.168 14 C -0.052 4.052 15 C -0.143 4.143 16 C 0.161 3.839 17 O -0.492 6.492 18 C -0.182 4.182 19 C 0.126 3.874 20 F -0.146 7.146 21 H 0.059 0.941 22 H 0.060 0.940 23 H 0.067 0.933 24 H 0.281 0.719 25 H 0.145 0.855 26 H 0.175 0.825 27 H 0.420 0.580 28 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.922 -12.206 -0.867 14.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.153 5.153 3 C -0.491 4.491 4 H 0.090 0.910 5 C -0.192 4.192 6 N -0.503 5.503 7 Si 0.807 3.193 8 H -0.187 1.187 9 H -0.193 1.193 10 H -0.202 1.202 11 C 0.246 3.754 12 O -0.527 6.527 13 C -0.172 4.172 14 C -0.071 4.071 15 C -0.161 4.161 16 C 0.115 3.885 17 O -0.306 6.306 18 C -0.201 4.201 19 C 0.105 3.895 20 F -0.124 7.124 21 H 0.078 0.922 22 H 0.079 0.921 23 H 0.085 0.915 24 H 0.091 0.909 25 H 0.163 0.837 26 H 0.193 0.807 27 H 0.282 0.718 28 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -7.809 -11.740 -1.176 14.149 hybrid contribution 1.128 0.846 -0.006 1.409 sum -6.682 -10.894 -1.181 12.835 Atomic orbital electron populations 1.21738 0.79003 1.01060 1.01415 1.43791 1.06994 1.04456 1.60039 1.19603 0.95679 0.83990 1.49789 0.91005 1.25998 0.96673 1.02106 0.94444 1.70138 1.21231 1.30537 1.28427 0.85086 0.78677 0.76721 0.78848 1.18703 1.19302 1.20225 1.18376 0.87198 0.84367 0.85497 1.90581 1.15895 1.87609 1.58603 1.20175 0.99940 0.94994 1.02084 1.21328 0.91224 0.98174 0.96326 1.21660 1.02113 0.92460 0.99848 1.18151 0.89017 0.88163 0.93133 1.84709 1.58544 1.21500 1.65894 1.21419 0.97214 0.96468 1.04984 1.17802 0.85237 0.94828 0.91623 1.91478 1.52536 1.95318 1.73102 0.92242 0.92145 0.91481 0.90858 0.83711 0.80732 0.71827 0.81752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.88 7.40 127.77 0.94 5.83 15 2 N -0.44 -23.70 3.02 -662.73 -2.00 -25.71 15 3 C -0.36 -21.39 9.30 84.08 0.78 -20.60 15 4 H 0.07 4.62 7.42 -2.91 -0.02 4.60 15 5 C 0.01 0.71 4.71 84.94 0.40 1.11 15 6 N -0.87 -44.79 11.24 21.68 0.24 -44.55 15 7 Si 0.98 41.90 29.64 68.60 2.03 43.93 15 8 H -0.26 -10.57 7.11 99.48 0.71 -9.86 15 9 H -0.27 -10.73 7.11 99.48 0.71 -10.02 15 10 H -0.28 -12.24 7.11 99.48 0.71 -11.53 15 11 C 0.45 24.70 7.00 86.64 0.61 25.31 15 12 O -0.64 -40.36 16.18 -4.15 -0.07 -40.43 15 13 C -0.17 -6.98 4.98 -20.05 -0.10 -7.08 15 14 C -0.05 -1.63 7.65 22.51 0.17 -1.46 15 15 C -0.14 -3.24 9.96 22.33 0.22 -3.02 15 16 C 0.16 3.56 6.71 22.63 0.15 3.71 15 17 O -0.49 -7.68 13.49 -90.34 -1.22 -8.90 15 18 C -0.18 -4.92 9.95 22.37 0.22 -4.69 15 19 C 0.13 4.77 7.25 22.66 0.16 4.93 15 20 F -0.15 -6.38 16.43 44.97 0.74 -5.64 15 21 H 0.06 2.55 6.98 -2.39 -0.02 2.53 15 22 H 0.06 2.79 6.64 -2.39 -0.02 2.78 15 23 H 0.07 2.52 5.95 -2.39 -0.01 2.50 15 24 H 0.28 13.31 8.31 -92.71 -0.77 12.54 15 25 H 0.15 4.54 6.14 -2.91 -0.02 4.52 15 26 H 0.18 2.67 8.06 -2.91 -0.02 2.65 15 27 H 0.42 2.05 9.06 -74.06 -0.67 1.38 15 28 H 0.16 3.57 8.06 -2.91 -0.02 3.55 15 Total: -1.00 -75.48 252.84 3.84 -71.64 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: 0.55 Total: 5.62 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: 3.57 Total: 4.03 kcal Atomic # 7 Polarization: -68.50 SS G_CDS: -1.76 Total: -70.25 kcal Atomic # 8 Polarization: -48.04 SS G_CDS: -1.29 Total: -49.33 kcal Atomic # 9 Polarization: -6.38 SS G_CDS: 0.74 Total: -5.64 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -75.48 3.84 -71.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226427066.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.414 kcal (2) G-P(sol) polarization free energy of solvation -75.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds