Wall clock time and date at job start Sun Mar 29 2020 22:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35885 * 117.00454 * 2 1 4 4 C 1.38935 * 119.95707 * 0.02562 * 3 2 1 5 5 C 1.37959 * 120.07157 * 179.70431 * 4 3 2 6 6 C 1.39080 * 119.99507 * 0.54765 * 5 4 3 7 7 N 1.39545 * 120.03972 * 179.72198 * 6 5 4 8 8 C 1.34768 * 120.00043 * 335.14864 * 7 6 5 9 9 O 1.21800 * 120.00322 * 354.46907 * 8 7 6 10 10 C 1.41712 * 120.00231 * 174.47162 * 8 7 6 11 11 H 1.08000 * 119.99491 * 0.02562 * 10 8 7 12 12 C 1.40147 * 120.00092 * 179.72153 * 10 8 7 13 13 N 1.30622 * 119.99963 * 0.27297 * 12 10 8 14 14 Si 1.86801 * 119.99729 * 180.27599 * 12 10 8 15 15 H 1.48505 * 109.47072 * 90.00143 * 14 12 10 16 16 H 1.48495 * 109.46963 * 210.00013 * 14 12 10 17 17 H 1.48499 * 109.47309 * 330.00064 * 14 12 10 18 18 C 1.39366 * 119.91833 * 359.44981 * 6 5 4 19 19 F 1.35093 * 120.03884 * 180.29480 * 18 6 5 20 20 C 1.38158 * 119.92118 * 0.27992 * 18 6 5 21 21 H 1.08996 * 109.46603 * 60.00130 * 1 2 3 22 22 H 1.09001 * 109.47360 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46909 * 300.00638 * 1 2 3 24 24 H 1.07993 * 119.95926 * 359.97438 * 4 3 2 25 25 H 1.08009 * 119.99813 * 180.27308 * 5 4 3 26 26 H 0.97001 * 119.99721 * 155.14396 * 7 6 5 27 27 H 0.97001 * 119.99855 * 179.97438 * 13 12 10 28 28 H 1.07997 * 119.99473 * 179.97438 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2107 0.0000 4 6 1.2886 2.3754 0.0005 5 6 1.9125 3.6058 0.0067 6 6 3.3013 3.6812 0.0009 7 7 3.9333 4.9253 0.0012 8 6 3.2922 6.0070 -0.4838 9 8 2.2028 5.8824 -1.0139 10 6 3.8857 7.2894 -0.3771 11 1 4.8519 7.3998 0.0926 12 6 3.2217 8.4134 -0.8867 13 7 2.0533 8.2797 -1.4553 14 14 4.0075 10.1028 -0.7529 15 1 4.8403 10.3580 -1.9557 16 1 2.9457 11.1365 -0.6576 17 1 4.8614 10.1569 0.4608 18 6 4.0608 2.5127 0.0004 19 9 5.4099 2.5831 0.0008 20 6 3.4324 1.2823 -0.0001 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5140 0.8900 24 1 0.2102 2.3174 0.0005 25 1 1.3225 4.5105 0.0116 26 1 4.8341 5.0115 0.3507 27 1 1.5935 9.0578 -1.8077 28 1 4.0199 0.3761 -0.0009 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229010762.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:48 Heat of formation + Delta-G solvation = -114.469887 kcal Electronic energy + Delta-G solvation = -16448.026306 eV Core-core repulsion = 13378.140678 eV Total energy + Delta-G solvation = -3069.885628 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.89858 -41.17858 -39.99753 -37.80801 -35.17929 -34.44492 -31.82099 -30.31628 -28.65312 -27.55910 -24.35671 -23.21844 -21.80377 -19.79621 -19.28874 -18.01284 -17.86084 -17.24443 -16.92956 -16.80414 -16.32453 -15.84289 -15.75476 -15.13831 -14.84716 -14.53657 -13.70220 -13.57473 -13.36268 -13.20086 -13.05468 -12.81839 -12.72892 -12.20653 -12.02474 -11.90886 -11.03296 -10.64181 -10.00420 -9.74002 -8.48916 -8.41662 -7.05085 0.13495 0.36102 1.39375 1.39628 1.56294 2.18995 2.26091 2.29860 2.66541 2.83733 3.35040 3.59001 3.82068 3.96904 4.28517 4.36966 4.45717 4.53480 4.72256 4.79036 5.03134 5.18435 5.30702 5.35710 5.55311 5.83919 6.06972 6.19107 6.44375 6.70279 7.28588 8.31426 8.51044 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.041214 B = 0.006054 C = 0.005342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.210602 B = 4623.734053 C = 5239.875279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.324 6.324 3 C 0.114 3.886 4 C -0.181 4.181 5 C -0.099 4.099 6 C 0.102 3.898 7 N -0.691 5.691 8 C 0.529 3.471 9 O -0.607 6.607 10 C -0.564 4.564 11 H 0.089 0.911 12 C 0.034 3.966 13 N -0.796 5.796 14 Si 1.002 2.998 15 H -0.261 1.261 16 H -0.268 1.268 17 H -0.250 1.250 18 C 0.068 3.932 19 F -0.138 7.138 20 C -0.159 4.159 21 H 0.059 0.941 22 H 0.128 0.872 23 H 0.064 0.936 24 H 0.154 0.846 25 H 0.129 0.871 26 H 0.404 0.596 27 H 0.281 0.719 28 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.325 -10.468 3.942 11.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.238 6.238 3 C 0.068 3.932 4 C -0.201 4.201 5 C -0.120 4.120 6 C 0.003 3.997 7 N -0.334 5.334 8 C 0.340 3.660 9 O -0.495 6.495 10 C -0.598 4.598 11 H 0.107 0.893 12 C -0.185 4.185 13 N -0.424 5.424 14 Si 0.821 3.179 15 H -0.185 1.185 16 H -0.193 1.193 17 H -0.173 1.173 18 C 0.045 3.955 19 F -0.117 7.117 20 C -0.178 4.178 21 H 0.077 0.923 22 H 0.146 0.854 23 H 0.082 0.918 24 H 0.172 0.828 25 H 0.147 0.853 26 H 0.239 0.761 27 H 0.091 0.909 28 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.103 -10.576 3.488 11.191 hybrid contribution 0.661 1.030 0.040 1.225 sum -0.442 -9.546 3.528 10.186 Atomic orbital electron populations 1.23382 0.76376 1.05809 1.02176 1.85993 1.23388 1.25388 1.88985 1.18511 0.91271 0.84642 0.98804 1.21375 1.01324 0.90657 1.06703 1.21195 0.92656 0.99069 0.99105 1.18226 0.92997 0.85542 1.02909 1.43652 1.19261 1.05930 1.64552 1.17377 0.85428 0.84481 0.78748 1.90555 1.23639 1.85881 1.49411 1.20570 1.07290 0.91438 1.40540 0.89320 1.26998 0.94388 1.05610 0.91519 1.70131 1.13253 1.33120 1.25868 0.84950 0.78530 0.74282 0.80187 1.18538 1.19302 1.17277 1.17051 0.76586 0.92632 1.09219 1.91424 1.28651 1.97102 1.94518 1.20101 0.92781 0.96561 1.08402 0.92283 0.85424 0.91782 0.82804 0.85296 0.76133 0.90873 0.81869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.41 15 2 O -0.32 -8.43 10.49 -92.26 -0.97 -9.40 15 3 C 0.11 3.58 6.69 22.58 0.15 3.73 15 4 C -0.18 -6.20 9.03 22.37 0.20 -6.00 15 5 C -0.10 -4.33 8.71 22.41 0.20 -4.14 15 6 C 0.10 4.54 6.44 38.39 0.25 4.78 15 7 N -0.69 -33.23 5.28 -311.16 -1.64 -34.88 15 8 C 0.53 30.44 7.37 85.10 0.63 31.06 15 9 O -0.61 -38.86 12.03 -4.67 -0.06 -38.91 15 10 C -0.56 -31.17 9.31 23.59 0.22 -30.95 15 11 H 0.09 4.41 7.85 -2.91 -0.02 4.39 15 12 C 0.03 1.80 5.50 85.34 0.47 2.27 15 13 N -0.80 -46.31 11.73 21.85 0.26 -46.06 15 14 Si 1.00 39.12 29.56 68.60 2.03 41.15 15 15 H -0.26 -9.76 7.11 99.48 0.71 -9.06 15 16 H -0.27 -10.02 7.11 99.48 0.71 -9.31 15 17 H -0.25 -9.14 7.11 99.48 0.71 -8.43 15 18 C 0.07 2.56 7.31 22.52 0.16 2.73 15 19 F -0.14 -5.00 16.81 44.97 0.76 -4.25 15 20 C -0.16 -5.10 9.96 22.39 0.22 -4.88 15 21 H 0.06 1.02 7.66 -2.39 -0.02 1.00 15 22 H 0.13 1.43 8.14 -2.39 -0.02 1.41 15 23 H 0.06 1.02 7.66 -2.39 -0.02 1.01 15 24 H 0.15 4.30 6.29 -2.91 -0.02 4.28 15 25 H 0.13 6.62 5.78 -2.91 -0.02 6.60 15 26 H 0.40 17.20 8.40 -92.71 -0.78 16.42 15 27 H 0.28 14.66 8.29 -92.71 -0.77 13.89 15 28 H 0.16 4.29 8.06 -2.91 -0.02 4.27 15 Total: -1.00 -70.28 255.46 4.42 -65.86 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: 0.44 Total: 26.47 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: 3.61 Total: 0.01 kcal Atomic # 7 Polarization: -79.55 SS G_CDS: -1.39 Total: -80.94 kcal Atomic # 8 Polarization: -47.29 SS G_CDS: -1.02 Total: -48.31 kcal Atomic # 9 Polarization: -5.00 SS G_CDS: 0.76 Total: -4.25 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Total: -70.28 4.42 -65.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229010762.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.610 kcal (2) G-P(sol) polarization free energy of solvation -70.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds