Wall clock time and date at job start Sun Mar 29 2020 22:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38229 * 120.00928 * 2 1 4 4 C 1.38224 * 120.01489 * 179.97438 * 3 2 1 5 5 C 1.38262 * 120.02428 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99069 * 179.97438 * 5 4 3 7 7 N 1.46905 * 109.47066 * 90.00171 * 6 5 4 8 8 C 1.46901 * 110.99870 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.46943 * 180.02562 * 8 7 6 10 10 H 1.08000 * 120.00162 * 359.97438 * 9 8 7 11 11 C 1.37883 * 120.00023 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99532 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00003 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47381 * 359.97438 * 13 11 9 15 15 H 1.48508 * 109.47001 * 119.99934 * 13 11 9 16 16 H 1.48497 * 109.47392 * 239.99632 * 13 11 9 17 17 C 1.38192 * 120.01296 * 0.23355 * 5 4 3 18 18 C 1.38334 * 120.00345 * 179.97438 * 2 1 3 19 19 Cl 1.73605 * 120.01432 * 0.04310 * 18 2 1 20 20 H 1.09003 * 109.47008 * 90.00122 * 1 2 3 21 21 H 1.08998 * 109.47437 * 209.99916 * 1 2 3 22 22 H 1.08997 * 109.47063 * 330.00317 * 1 2 3 23 23 H 1.08003 * 119.99160 * 359.95623 * 3 2 1 24 24 H 1.07996 * 119.98312 * 180.02562 * 4 3 2 25 25 H 1.09001 * 109.47558 * 330.00334 * 6 5 4 26 26 H 1.08998 * 109.47216 * 209.99996 * 6 5 4 27 27 H 1.00901 * 110.99869 * 56.04737 * 7 6 5 28 28 H 1.09004 * 109.47031 * 299.99620 * 8 7 6 29 29 H 1.08995 * 109.47111 * 59.99900 * 8 7 6 30 30 H 0.97001 * 119.99132 * 180.02562 * 12 11 9 31 31 H 1.08003 * 120.00650 * 179.74550 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1970 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2726 0.0001 0.0005 6 6 5.7795 0.0011 0.0005 7 7 6.2692 0.0014 1.3856 8 6 7.7377 0.0030 1.4248 9 6 8.2019 0.0027 2.8584 10 1 7.4784 0.0018 3.6603 11 6 9.5503 0.0045 3.1465 12 7 10.4312 0.0061 2.1700 13 14 10.1257 0.0048 4.9236 14 1 8.9462 0.0034 5.8259 15 1 10.9460 -1.2067 5.1785 16 1 10.9425 1.2183 5.1793 17 6 3.5825 -1.1972 -0.0049 18 6 2.1988 -1.1980 0.0005 19 17 1.3312 -2.7017 0.0001 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.6584 2.1323 -0.0007 24 1 4.1202 2.1326 0.0010 25 1 6.1423 0.8914 -0.5132 26 1 6.1435 -0.8886 -0.5133 27 1 5.8942 -0.7802 1.9018 28 1 8.1156 -0.8865 0.9207 29 1 8.1136 0.8935 0.9210 30 1 11.3798 0.0071 2.3727 31 1 4.1231 -2.1322 -0.0090 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235772653.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:15 Heat of formation + Delta-G solvation = 1.703162 kcal Electronic energy + Delta-G solvation = -14001.899587 eV Core-core repulsion = 11501.221070 eV Total energy + Delta-G solvation = -2500.678517 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.51930 -36.56650 -35.47229 -33.17631 -31.90525 -30.67892 -28.42319 -26.07911 -23.55668 -22.74223 -21.45529 -20.69326 -16.81244 -15.95829 -15.85769 -15.25729 -14.67813 -14.37619 -14.08234 -13.77429 -13.41555 -13.09082 -12.46806 -12.39613 -12.25073 -11.61529 -11.48053 -11.38849 -11.17913 -11.08343 -10.79331 -10.71478 -10.53132 -9.96284 -9.21543 -8.78495 -8.51933 -8.43487 -7.35738 -6.05435 -4.07414 1.23961 1.32182 2.14718 3.30362 3.37640 3.43063 3.66575 4.42461 4.72473 4.76194 5.04805 5.15546 5.30763 5.36630 5.46380 5.50031 5.60111 5.62868 5.76072 6.00222 6.03053 6.19636 6.26552 6.42482 6.72665 6.89362 7.18763 7.37109 7.75420 8.08467 8.32911 8.55254 9.01916 9.57730 11.05731 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.038151 B = 0.004411 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.743910 B = 6346.454950 C = 6550.230438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.088 4.088 3 C -0.112 4.112 4 C -0.090 4.090 5 C -0.059 4.059 6 C 0.094 3.906 7 N -0.684 5.684 8 C 0.193 3.807 9 C -0.514 4.514 10 H 0.063 0.937 11 C 0.056 3.944 12 N -0.898 5.898 13 Si 0.899 3.101 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.284 1.284 17 C -0.104 4.104 18 C -0.036 4.036 19 Cl -0.079 7.079 20 H 0.071 0.929 21 H 0.070 0.930 22 H 0.068 0.932 23 H 0.128 0.872 24 H 0.131 0.869 25 H 0.076 0.924 26 H 0.031 0.969 27 H 0.330 0.670 28 H -0.012 1.012 29 H 0.029 0.971 30 H 0.261 0.739 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.094 -0.769 -6.300 19.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.089 4.089 3 C -0.130 4.130 4 C -0.109 4.109 5 C -0.060 4.060 6 C -0.036 4.036 7 N -0.314 5.314 8 C 0.066 3.934 9 C -0.553 4.553 10 H 0.081 0.919 11 C -0.146 4.146 12 N -0.537 5.537 13 Si 0.727 3.273 14 H -0.196 1.196 15 H -0.211 1.211 16 H -0.210 1.210 17 C -0.123 4.123 18 C -0.063 4.063 19 Cl -0.050 7.050 20 H 0.089 0.911 21 H 0.089 0.911 22 H 0.087 0.913 23 H 0.146 0.854 24 H 0.149 0.851 25 H 0.095 0.905 26 H 0.049 0.951 27 H 0.147 0.853 28 H 0.006 0.994 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -18.003 -0.216 -6.264 19.063 hybrid contribution 0.663 -1.065 0.644 1.410 sum -17.340 -1.281 -5.620 18.273 Atomic orbital electron populations 1.20824 0.90686 1.03203 1.02514 1.19689 0.96419 0.91529 1.01234 1.20969 0.94197 0.96828 1.00982 1.21180 0.93679 0.98344 0.97708 1.19998 0.96523 0.92113 0.97337 1.20902 0.88454 1.00962 0.93265 1.60751 1.12530 1.49119 1.09012 1.19601 0.80349 0.95933 0.97485 1.21215 0.91626 1.50323 0.92114 0.91859 1.24990 0.96698 0.95283 0.97587 1.69975 1.01461 1.50941 1.31366 0.86418 0.78690 0.77525 0.84650 1.19626 1.21063 1.20963 1.20972 0.91716 0.98988 1.00616 1.20720 0.92206 0.86265 1.07077 1.98337 1.76991 1.32627 1.97026 0.91055 0.91061 0.91304 0.85376 0.85149 0.90521 0.95143 0.85306 0.99447 0.95253 0.92933 0.85220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 9.62 36.01 0.35 -0.72 16 2 C -0.09 -1.05 5.88 -104.59 -0.62 -1.67 16 3 C -0.11 -1.32 9.70 -39.59 -0.38 -1.71 16 4 C -0.09 -1.24 9.70 -39.58 -0.38 -1.62 16 5 C -0.06 -0.89 5.39 -104.63 -0.56 -1.46 16 6 C 0.09 1.64 5.81 -4.97 -0.03 1.61 16 7 N -0.68 -14.63 6.48 -116.34 -0.75 -15.39 16 8 C 0.19 5.03 5.44 -4.98 -0.03 5.00 16 9 C -0.51 -14.60 9.32 -34.44 -0.32 -14.92 16 10 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 11 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 12 N -0.90 -26.78 13.29 55.43 0.74 -26.05 16 13 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 14 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 C -0.10 -1.48 9.49 -39.55 -0.38 -1.86 16 18 C -0.04 -0.48 6.31 -39.50 -0.25 -0.73 16 19 Cl -0.08 -0.94 27.30 -51.86 -1.42 -2.36 16 20 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 21 H 0.07 0.66 6.90 -51.93 -0.36 0.30 16 22 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 23 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 24 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 25 H 0.08 1.32 8.09 -51.93 -0.42 0.90 16 26 H 0.03 0.53 8.08 -51.93 -0.42 0.11 16 27 H 0.33 6.89 8.72 -39.29 -0.34 6.55 16 28 H -0.01 -0.34 8.14 -51.93 -0.42 -0.76 16 29 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.13 1.78 8.06 -52.48 -0.42 1.36 16 LS Contribution 284.64 15.07 4.29 4.29 Total: -1.00 -29.78 284.64 -8.91 -38.69 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -4.04 Total: 0.71 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -2.70 Total: -16.58 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: -0.02 Total: -41.44 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -1.42 Total: -2.36 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.78 -8.91 -38.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235772653.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.390 kcal (2) G-P(sol) polarization free energy of solvation -29.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds