Wall clock time and date at job start Sun Mar 29 2020 22:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38229 * 120.00928 * 2 1 4 4 C 1.38224 * 120.01489 * 179.97438 * 3 2 1 5 5 C 1.38262 * 120.02428 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99069 * 179.97438 * 5 4 3 7 7 N 1.46905 * 109.47066 * 90.00171 * 6 5 4 8 8 C 1.46901 * 110.99870 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.46943 * 180.02562 * 8 7 6 10 10 H 1.08000 * 120.00162 * 359.97438 * 9 8 7 11 11 C 1.37883 * 120.00023 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99532 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00003 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47381 * 359.97438 * 13 11 9 15 15 H 1.48508 * 109.47001 * 119.99934 * 13 11 9 16 16 H 1.48497 * 109.47392 * 239.99632 * 13 11 9 17 17 C 1.38192 * 120.01296 * 0.23355 * 5 4 3 18 18 C 1.38334 * 120.00345 * 179.97438 * 2 1 3 19 19 Cl 1.73605 * 120.01432 * 0.04310 * 18 2 1 20 20 H 1.09003 * 109.47008 * 90.00122 * 1 2 3 21 21 H 1.08998 * 109.47437 * 209.99916 * 1 2 3 22 22 H 1.08997 * 109.47063 * 330.00317 * 1 2 3 23 23 H 1.08003 * 119.99160 * 359.95623 * 3 2 1 24 24 H 1.07996 * 119.98312 * 180.02562 * 4 3 2 25 25 H 1.09001 * 109.47558 * 330.00334 * 6 5 4 26 26 H 1.08998 * 109.47216 * 209.99996 * 6 5 4 27 27 H 1.00901 * 110.99869 * 56.04737 * 7 6 5 28 28 H 1.09004 * 109.47031 * 299.99620 * 8 7 6 29 29 H 1.08995 * 109.47111 * 59.99900 * 8 7 6 30 30 H 0.97001 * 119.99132 * 180.02562 * 12 11 9 31 31 H 1.08003 * 120.00650 * 179.74550 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1970 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2726 0.0001 0.0005 6 6 5.7795 0.0011 0.0005 7 7 6.2692 0.0014 1.3856 8 6 7.7377 0.0030 1.4248 9 6 8.2019 0.0027 2.8584 10 1 7.4784 0.0018 3.6603 11 6 9.5503 0.0045 3.1465 12 7 10.4312 0.0061 2.1700 13 14 10.1257 0.0048 4.9236 14 1 8.9462 0.0034 5.8259 15 1 10.9460 -1.2067 5.1785 16 1 10.9425 1.2183 5.1793 17 6 3.5825 -1.1972 -0.0049 18 6 2.1988 -1.1980 0.0005 19 17 1.3312 -2.7017 0.0001 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.6584 2.1323 -0.0007 24 1 4.1202 2.1326 0.0010 25 1 6.1423 0.8914 -0.5132 26 1 6.1435 -0.8886 -0.5133 27 1 5.8942 -0.7802 1.9018 28 1 8.1156 -0.8865 0.9207 29 1 8.1136 0.8935 0.9210 30 1 11.3798 0.0071 2.3727 31 1 4.1231 -2.1322 -0.0090 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235772653.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:15 Heat of formation + Delta-G solvation = -16.011830 kcal Electronic energy + Delta-G solvation = -14002.667766 eV Core-core repulsion = 11501.221070 eV Total energy + Delta-G solvation = -2501.446697 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.56674 -37.67088 -36.98789 -34.90126 -33.45489 -31.69683 -29.90347 -27.69705 -25.00632 -23.79323 -23.36286 -21.80605 -18.71352 -17.40308 -16.95136 -16.64030 -16.24482 -15.87998 -15.35585 -14.89732 -14.84958 -14.52605 -13.90457 -13.50664 -13.32905 -13.20242 -12.89398 -12.79131 -12.64040 -12.38139 -12.29007 -12.12429 -12.03260 -11.63357 -11.28397 -10.68040 -9.81197 -9.51231 -9.15033 -8.23778 -6.34980 0.19834 0.28882 1.15243 1.41378 1.41946 1.56036 2.39451 2.61538 3.09825 3.61809 3.79321 3.86576 3.99881 4.19590 4.34193 4.48633 4.66973 4.72034 4.78391 4.82422 4.95484 5.06071 5.17734 5.24730 5.29032 5.46127 5.58333 5.63291 5.87962 5.99424 6.38930 6.65491 6.85394 7.36026 8.87989 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.038151 B = 0.004411 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.743910 B = 6346.454950 C = 6550.230438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.084 4.084 3 C -0.106 4.106 4 C -0.098 4.098 5 C -0.078 4.078 6 C 0.098 3.902 7 N -0.681 5.681 8 C 0.207 3.793 9 C -0.536 4.536 10 H 0.063 0.937 11 C 0.003 3.997 12 N -0.933 5.933 13 Si 0.973 3.027 14 H -0.264 1.264 15 H -0.277 1.277 16 H -0.277 1.277 17 C -0.112 4.112 18 C -0.048 4.048 19 Cl -0.069 7.069 20 H 0.085 0.915 21 H 0.069 0.931 22 H 0.088 0.912 23 H 0.160 0.840 24 H 0.135 0.865 25 H 0.075 0.925 26 H 0.028 0.972 27 H 0.334 0.666 28 H -0.037 1.037 29 H 0.005 0.995 30 H 0.266 0.734 31 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.876 -0.305 -5.493 20.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.085 4.085 3 C -0.124 4.124 4 C -0.116 4.116 5 C -0.078 4.078 6 C -0.031 4.031 7 N -0.312 5.312 8 C 0.079 3.921 9 C -0.575 4.575 10 H 0.081 0.919 11 C -0.196 4.196 12 N -0.574 5.574 13 Si 0.798 3.202 14 H -0.188 1.188 15 H -0.203 1.203 16 H -0.202 1.202 17 C -0.132 4.132 18 C -0.074 4.074 19 Cl -0.040 7.040 20 H 0.104 0.896 21 H 0.088 0.912 22 H 0.106 0.894 23 H 0.178 0.822 24 H 0.153 0.847 25 H 0.093 0.907 26 H 0.047 0.953 27 H 0.150 0.850 28 H -0.019 1.019 29 H 0.023 0.977 30 H 0.074 0.926 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -19.812 0.243 -5.468 20.554 hybrid contribution 1.121 -1.219 0.321 1.687 sum -18.691 -0.976 -5.147 19.411 Atomic orbital electron populations 1.20905 0.88419 1.04149 1.03684 1.20108 0.98097 0.90990 0.99304 1.21297 0.93410 0.98169 0.99547 1.21336 0.94795 0.97865 0.97637 1.19741 0.94742 0.93325 1.00025 1.20858 0.90580 1.00764 0.90888 1.60619 1.09587 1.49269 1.11700 1.19254 0.83136 0.93531 0.96158 1.21558 0.92200 1.50697 0.92999 0.91862 1.25940 0.96749 0.94498 1.02384 1.70094 1.01957 1.51487 1.33822 0.85274 0.78301 0.77820 0.78839 1.18765 1.20262 1.20248 1.20979 0.92522 0.98601 1.01079 1.20849 0.91939 0.87323 1.07299 1.98338 1.76575 1.32134 1.96988 0.89634 0.91171 0.89362 0.82207 0.84697 0.90657 0.95344 0.84961 1.01926 0.97702 0.92550 0.85523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.74 9.62 71.24 0.69 -1.06 16 2 C -0.08 -1.81 5.88 -19.84 -0.12 -1.92 16 3 C -0.11 -2.24 9.70 22.26 0.22 -2.02 16 4 C -0.10 -2.55 9.70 22.27 0.22 -2.33 16 5 C -0.08 -2.34 5.39 -19.87 -0.11 -2.45 16 6 C 0.10 3.52 5.81 85.55 0.50 4.02 16 7 N -0.68 -29.85 6.48 -521.98 -3.38 -33.24 16 8 C 0.21 11.18 5.44 85.56 0.47 11.64 16 9 C -0.54 -30.90 9.32 25.60 0.24 -30.66 16 10 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 11 C 0.00 0.15 5.46 84.66 0.46 0.61 16 12 N -0.93 -56.48 13.29 21.45 0.28 -56.20 16 13 Si 0.97 44.44 29.54 68.60 2.03 46.47 16 14 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 15 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 16 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 17 C -0.11 -3.18 9.49 22.29 0.21 -2.97 16 18 C -0.05 -1.19 6.31 22.32 0.14 -1.05 16 19 Cl -0.07 -1.56 27.30 -2.72 -0.07 -1.63 16 20 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 21 H 0.07 1.10 6.90 -2.39 -0.02 1.09 16 22 H 0.09 1.02 8.09 -2.39 -0.02 1.00 16 23 H 0.16 2.32 8.06 -2.91 -0.02 2.29 16 24 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 25 H 0.08 2.68 8.09 -2.39 -0.02 2.66 16 26 H 0.03 1.03 8.08 -2.39 -0.02 1.01 16 27 H 0.33 14.19 8.72 -89.69 -0.78 13.41 16 28 H -0.04 -2.13 8.14 -2.39 -0.02 -2.15 16 29 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 31 H 0.13 3.54 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -63.68 284.64 2.11 -61.57 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: 0.34 Total: 11.21 kcal Atomic # 6 Polarization: -31.10 SS G_CDS: 2.91 Total: -28.19 kcal Atomic # 7 Polarization: -86.34 SS G_CDS: -3.10 Total: -89.43 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -0.07 Total: -1.63 kcal Total: -63.68 2.11 -61.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235772653.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.561 kcal (2) G-P(sol) polarization free energy of solvation -63.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds