Wall clock time and date at job start Sun Mar 29 2020 22:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34104 * 126.09541 * 2 1 4 4 O 1.35116 * 107.29678 * 179.97438 * 3 2 1 5 5 C 1.34261 * 107.73508 * 359.97438 * 4 3 2 6 6 S 1.76204 * 125.72578 * 180.02562 * 5 4 3 7 7 C 1.80996 * 99.99702 * 0.02562 * 6 5 4 8 8 C 1.53005 * 109.47246 * 180.02562 * 7 6 5 9 9 C 1.50696 * 115.54792 * 39.92405 * 8 7 6 10 10 H 1.07995 * 120.00301 * 264.90976 * 9 8 7 11 11 C 1.37885 * 119.99744 * 84.90952 * 9 8 7 12 12 N 1.31514 * 120.00107 * 353.81482 * 11 9 8 13 13 Si 1.86796 * 119.99747 * 173.80824 * 11 9 8 14 14 H 1.48504 * 109.46702 * 90.00426 * 13 11 9 15 15 H 1.48501 * 109.47246 * 210.00281 * 13 11 9 16 16 H 1.48497 * 109.47727 * 330.00821 * 13 11 9 17 17 C 1.52999 * 117.49740 * 254.21695 * 8 7 6 18 18 C 1.52994 * 60.00133 * 252.50934 * 17 8 7 19 19 N 1.31126 * 108.55787 * 0.26250 * 5 4 3 20 20 H 1.09008 * 109.46869 * 90.00449 * 1 2 3 21 21 H 1.08997 * 109.47273 * 210.00010 * 1 2 3 22 22 H 1.09001 * 109.47058 * 330.00480 * 1 2 3 23 23 H 1.08005 * 126.35218 * 359.96869 * 3 2 1 24 24 H 1.09008 * 109.47271 * 60.00500 * 7 6 5 25 25 H 1.08998 * 109.47556 * 300.00081 * 7 6 5 26 26 H 0.97000 * 119.99830 * 175.00944 * 12 11 9 27 27 H 1.08997 * 117.49892 * 0.02562 * 17 8 7 28 28 H 1.08999 * 117.49352 * 145.01573 * 17 8 7 29 29 H 1.09002 * 117.50347 * 252.51258 * 18 17 8 30 30 H 1.09001 * 117.51797 * 107.48183 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2970 1.0836 0.0000 4 8 3.5761 0.6482 0.0006 5 6 3.5512 -0.6942 0.0015 6 16 4.9623 -1.7494 0.0032 7 6 6.2814 -0.5101 0.0040 8 6 7.6409 -1.2122 0.0048 9 6 7.7404 -2.4368 -0.8676 10 1 7.5804 -3.4168 -0.4431 11 6 8.0358 -2.3061 -2.2081 12 7 8.1106 -1.1108 -2.7515 13 14 8.3299 -3.8268 -3.2523 14 1 7.0426 -4.2835 -3.8351 15 1 9.2801 -3.5003 -4.3457 16 1 8.9004 -4.9056 -2.4062 17 6 8.4371 -1.2083 1.3113 18 6 8.8883 -0.3363 0.1380 19 7 2.3006 -1.0884 -0.0042 20 1 -0.3633 -0.0001 -1.0278 21 1 -0.3634 -0.8899 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.9713 2.1134 -0.0005 24 1 6.1936 0.1135 0.8938 25 1 6.1953 0.1129 -0.8863 26 1 8.3890 -1.0148 -3.6757 27 1 7.9923 -0.7060 2.1703 28 1 9.0330 -2.0919 1.5400 29 1 9.7811 -0.6460 -0.4053 30 1 8.7405 0.7402 0.2245 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235932206.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:17 Heat of formation + Delta-G solvation = 38.766012 kcal Electronic energy + Delta-G solvation = -14480.578636 eV Core-core repulsion = 11983.550991 eV Total energy + Delta-G solvation = -2497.027645 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.72464 -36.73288 -34.76653 -32.08367 -31.23334 -28.07159 -27.08149 -25.47385 -22.69609 -21.23312 -21.00979 -19.39193 -17.59625 -16.33676 -16.28102 -15.60430 -14.71564 -14.39853 -13.87457 -13.64766 -13.26071 -13.13495 -12.78278 -12.27380 -12.03024 -11.60210 -11.08963 -10.98013 -10.77683 -10.57104 -10.32560 -10.19243 -10.08869 -9.74722 -9.10727 -8.92584 -8.56607 -8.19559 -6.87433 -6.17982 -4.25777 1.67064 1.75440 2.71044 2.94008 3.26664 3.34078 3.36867 3.81009 4.33267 4.87159 5.05333 5.11901 5.17181 5.50284 5.59989 5.77839 5.82884 5.96522 6.01075 6.20935 6.29371 6.35970 6.51458 6.61371 6.68139 6.94502 7.18320 7.36273 7.74574 7.98679 8.20450 8.76642 9.42095 10.90234 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.029326 B = 0.007097 C = 0.006306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.558590 B = 3944.112700 C = 4438.855349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.009 4.009 3 C -0.103 4.103 4 O -0.202 6.202 5 C 0.171 3.829 6 S 0.096 5.904 7 C -0.074 4.074 8 C 0.047 3.953 9 C -0.499 4.499 10 H 0.067 0.933 11 C 0.081 3.919 12 N -0.869 5.869 13 Si 0.889 3.111 14 H -0.276 1.276 15 H -0.285 1.285 16 H -0.271 1.271 17 C -0.205 4.205 18 C -0.145 4.145 19 N -0.487 5.487 20 H 0.072 0.928 21 H 0.073 0.927 22 H 0.071 0.929 23 H 0.207 0.793 24 H 0.062 0.938 25 H 0.092 0.908 26 H 0.263 0.737 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.167 4.256 4.703 10.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.130 4.130 3 C -0.178 4.178 4 O -0.092 6.092 5 C -0.141 4.141 6 S 0.331 5.669 7 C -0.223 4.223 8 C 0.045 3.955 9 C -0.539 4.539 10 H 0.085 0.915 11 C -0.125 4.125 12 N -0.505 5.505 13 Si 0.716 3.284 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.196 1.196 17 C -0.242 4.242 18 C -0.185 4.185 19 N -0.221 5.221 20 H 0.090 0.910 21 H 0.092 0.908 22 H 0.089 0.911 23 H 0.224 0.776 24 H 0.081 0.919 25 H 0.111 0.889 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.297 2.549 4.510 9.781 hybrid contribution 0.296 1.578 -0.747 1.771 sum -8.001 4.127 3.763 9.757 Atomic orbital electron populations 1.20052 0.86920 1.02934 1.02592 1.21811 0.97842 0.88579 1.04788 1.24557 0.80752 1.00614 1.11839 1.84754 1.30197 1.23184 1.71031 1.29744 1.01056 0.82013 1.01309 1.86753 0.86646 1.03893 1.89577 1.23480 0.96831 0.98145 1.03831 1.18468 0.85642 0.96784 0.94599 1.20391 1.49954 0.90993 0.92512 0.91506 1.24958 0.94114 0.95977 0.97453 1.69999 1.44544 1.22029 1.13884 0.86633 0.78426 0.83283 0.80065 1.20134 1.21083 1.19594 1.23108 1.06809 1.02288 0.92027 1.22565 1.00598 0.94872 1.00477 1.70787 0.99101 1.30347 1.21856 0.90961 0.90780 0.91055 0.77612 0.91894 0.88940 0.92686 0.91355 0.89904 0.89580 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.42 36.00 0.38 -0.39 16 2 C -0.01 -0.15 7.10 -82.79 -0.59 -0.73 16 3 C -0.10 -1.58 12.07 29.28 0.35 -1.22 16 4 O -0.20 -3.88 10.24 3.53 0.04 -3.84 16 5 C 0.17 3.53 8.35 52.46 0.44 3.97 16 6 S 0.10 2.06 21.16 -107.50 -2.27 -0.21 16 7 C -0.07 -1.61 5.39 37.16 0.20 -1.41 16 8 C 0.05 1.10 1.64 -155.66 -0.26 0.84 16 9 C -0.50 -12.77 7.54 -34.44 -0.26 -13.03 16 10 H 0.07 1.73 7.82 -52.49 -0.41 1.32 16 11 C 0.08 2.10 5.39 -17.82 -0.10 2.01 16 12 N -0.87 -23.48 12.93 55.43 0.72 -22.76 16 13 Si 0.89 20.48 29.54 -169.99 -5.02 15.46 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 15 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 17 C -0.21 -4.20 9.88 -26.73 -0.26 -4.46 16 18 C -0.15 -3.20 9.47 -26.73 -0.25 -3.45 16 19 N -0.49 -9.76 11.35 -10.12 -0.11 -9.88 16 20 H 0.07 0.74 8.14 -51.92 -0.42 0.31 16 21 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.21 2.15 8.06 -52.48 -0.42 1.72 16 24 H 0.06 1.25 7.95 -51.91 -0.41 0.83 16 25 H 0.09 2.19 8.14 -51.92 -0.42 1.76 16 26 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 27 H 0.07 1.26 8.08 -51.93 -0.42 0.84 16 28 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 29 H 0.09 2.00 8.14 -51.93 -0.42 1.58 16 30 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 281.02 15.07 4.23 4.23 Total: -1.00 -28.62 281.02 -6.53 -35.16 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -3.76 Total: -0.26 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: -0.35 Total: -17.89 kcal Atomic # 7 Polarization: -33.24 SS G_CDS: 0.60 Total: -32.64 kcal Atomic # 8 Polarization: -3.88 SS G_CDS: 0.04 Total: -3.84 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -2.27 Total: -0.21 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.62 -6.53 -35.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235932206.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.925 kcal (2) G-P(sol) polarization free energy of solvation -28.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds