Wall clock time and date at job start Sun Mar 29 2020 22:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34104 * 126.09541 * 2 1 4 4 O 1.35116 * 107.29678 * 179.97438 * 3 2 1 5 5 C 1.34261 * 107.73508 * 359.97438 * 4 3 2 6 6 S 1.76204 * 125.72578 * 180.02562 * 5 4 3 7 7 C 1.80996 * 99.99702 * 0.02562 * 6 5 4 8 8 C 1.53005 * 109.47246 * 180.02562 * 7 6 5 9 9 C 1.50696 * 115.54792 * 39.92405 * 8 7 6 10 10 H 1.07995 * 120.00301 * 264.90976 * 9 8 7 11 11 C 1.37885 * 119.99744 * 84.90952 * 9 8 7 12 12 N 1.31514 * 120.00107 * 353.81482 * 11 9 8 13 13 Si 1.86796 * 119.99747 * 173.80824 * 11 9 8 14 14 H 1.48504 * 109.46702 * 90.00426 * 13 11 9 15 15 H 1.48501 * 109.47246 * 210.00281 * 13 11 9 16 16 H 1.48497 * 109.47727 * 330.00821 * 13 11 9 17 17 C 1.52999 * 117.49740 * 254.21695 * 8 7 6 18 18 C 1.52994 * 60.00133 * 252.50934 * 17 8 7 19 19 N 1.31126 * 108.55787 * 0.26250 * 5 4 3 20 20 H 1.09008 * 109.46869 * 90.00449 * 1 2 3 21 21 H 1.08997 * 109.47273 * 210.00010 * 1 2 3 22 22 H 1.09001 * 109.47058 * 330.00480 * 1 2 3 23 23 H 1.08005 * 126.35218 * 359.96869 * 3 2 1 24 24 H 1.09008 * 109.47271 * 60.00500 * 7 6 5 25 25 H 1.08998 * 109.47556 * 300.00081 * 7 6 5 26 26 H 0.97000 * 119.99830 * 175.00944 * 12 11 9 27 27 H 1.08997 * 117.49892 * 0.02562 * 17 8 7 28 28 H 1.08999 * 117.49352 * 145.01573 * 17 8 7 29 29 H 1.09002 * 117.50347 * 252.51258 * 18 17 8 30 30 H 1.09001 * 117.51797 * 107.48183 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2970 1.0836 0.0000 4 8 3.5761 0.6482 0.0006 5 6 3.5512 -0.6942 0.0015 6 16 4.9623 -1.7494 0.0032 7 6 6.2814 -0.5101 0.0040 8 6 7.6409 -1.2122 0.0048 9 6 7.7404 -2.4368 -0.8676 10 1 7.5804 -3.4168 -0.4431 11 6 8.0358 -2.3061 -2.2081 12 7 8.1106 -1.1108 -2.7515 13 14 8.3299 -3.8268 -3.2523 14 1 7.0426 -4.2835 -3.8351 15 1 9.2801 -3.5003 -4.3457 16 1 8.9004 -4.9056 -2.4062 17 6 8.4371 -1.2083 1.3113 18 6 8.8883 -0.3363 0.1380 19 7 2.3006 -1.0884 -0.0042 20 1 -0.3633 -0.0001 -1.0278 21 1 -0.3634 -0.8899 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.9713 2.1134 -0.0005 24 1 6.1936 0.1135 0.8938 25 1 6.1953 0.1129 -0.8863 26 1 8.3890 -1.0148 -3.6757 27 1 7.9923 -0.7060 2.1703 28 1 9.0330 -2.0919 1.5400 29 1 9.7811 -0.6460 -0.4053 30 1 8.7405 0.7402 0.2245 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235932206.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:16 Heat of formation + Delta-G solvation = 20.638832 kcal Electronic energy + Delta-G solvation = -14481.364689 eV Core-core repulsion = 11983.550991 eV Total energy + Delta-G solvation = -2497.813698 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.11935 -38.49343 -36.12358 -34.04048 -32.47162 -29.72860 -28.28888 -27.39091 -24.14822 -22.93315 -22.32496 -21.19718 -19.10254 -18.06244 -17.74038 -17.10284 -16.61439 -15.82299 -15.49834 -15.27742 -14.78023 -14.17592 -14.09243 -13.89326 -13.40722 -13.02899 -12.97645 -12.83590 -12.37163 -12.19335 -12.02772 -11.82608 -11.59779 -11.51451 -10.78331 -10.51625 -10.38715 -9.95340 -8.46032 -8.14990 -6.26536 0.12280 0.37724 1.12574 1.42034 1.45816 1.52962 1.59013 2.42507 2.46781 3.15749 3.42392 3.72227 3.93148 4.12382 4.28022 4.42466 4.58249 4.63200 4.78659 4.85541 4.87872 4.88751 4.93958 5.00789 5.20328 5.40675 5.45428 5.62953 5.74130 6.30053 6.60903 6.78867 7.43258 8.92736 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.029326 B = 0.007097 C = 0.006306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.558590 B = 3944.112700 C = 4438.855349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.030 4.030 3 C -0.087 4.087 4 O -0.216 6.216 5 C 0.145 3.855 6 S 0.072 5.928 7 C -0.056 4.056 8 C 0.016 3.984 9 C -0.505 4.505 10 H 0.057 0.943 11 C 0.040 3.960 12 N -0.898 5.898 13 Si 0.938 3.062 14 H -0.280 1.280 15 H -0.282 1.282 16 H -0.266 1.266 17 C -0.180 4.180 18 C -0.147 4.147 19 N -0.505 5.505 20 H 0.083 0.917 21 H 0.070 0.930 22 H 0.106 0.894 23 H 0.258 0.742 24 H 0.081 0.919 25 H 0.066 0.934 26 H 0.262 0.738 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.556 5.212 5.494 12.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.151 4.151 3 C -0.161 4.161 4 O -0.105 6.105 5 C -0.168 4.168 6 S 0.306 5.694 7 C -0.206 4.206 8 C 0.014 3.986 9 C -0.544 4.544 10 H 0.075 0.925 11 C -0.163 4.163 12 N -0.534 5.534 13 Si 0.764 3.236 14 H -0.206 1.206 15 H -0.208 1.208 16 H -0.191 1.191 17 C -0.217 4.217 18 C -0.187 4.187 19 N -0.240 5.240 20 H 0.102 0.898 21 H 0.089 0.911 22 H 0.125 0.875 23 H 0.274 0.726 24 H 0.099 0.901 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.113 0.887 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.667 3.501 5.307 11.571 hybrid contribution 0.556 1.363 -0.943 1.748 sum -9.112 4.864 4.364 11.213 Atomic orbital electron populations 1.20229 0.83466 1.04572 1.03835 1.22637 0.99989 0.87662 1.04781 1.25637 0.79079 1.02656 1.08717 1.84741 1.32322 1.22550 1.70907 1.29267 1.00721 0.82626 1.04192 1.86616 0.87441 1.04760 1.90598 1.23226 0.96236 0.97791 1.03305 1.18582 0.86720 0.96805 0.96498 1.20565 1.49305 0.91557 0.92988 0.92486 1.25535 0.94344 0.97912 0.98479 1.70081 1.46012 1.23349 1.13975 0.85868 0.78004 0.80904 0.78856 1.20558 1.20765 1.19056 1.23132 1.04981 1.01847 0.91732 1.22491 0.99215 0.95641 1.01327 1.70756 0.99422 1.32469 1.21381 0.89803 0.91090 0.87524 0.72588 0.90061 0.91570 0.92921 0.88660 0.89720 0.91522 0.90385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.23 10.42 71.24 0.74 -0.48 16 2 C -0.03 -0.89 7.10 41.18 0.29 -0.60 16 3 C -0.09 -2.42 12.07 66.88 0.81 -1.61 16 4 O -0.22 -8.01 10.24 -10.27 -0.11 -8.12 16 5 C 0.14 5.91 8.35 130.35 1.09 7.00 16 6 S 0.07 3.11 21.16 -56.49 -1.20 1.91 16 7 C -0.06 -2.47 5.39 71.98 0.39 -2.08 16 8 C 0.02 0.74 1.64 -52.93 -0.09 0.65 16 9 C -0.50 -26.13 7.54 25.60 0.19 -25.93 16 10 H 0.06 2.99 7.82 -2.91 -0.02 2.96 16 11 C 0.04 2.09 5.39 84.66 0.46 2.55 16 12 N -0.90 -49.35 12.93 21.45 0.28 -49.07 16 13 Si 0.94 42.48 29.54 68.60 2.03 44.51 16 14 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 15 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 16 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 17 C -0.18 -7.10 9.88 30.59 0.30 -6.80 16 18 C -0.15 -6.41 9.47 30.59 0.29 -6.12 16 19 N -0.50 -19.84 11.35 -300.15 -3.41 -23.25 16 20 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 21 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 22 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.26 4.03 8.06 -2.91 -0.02 4.01 16 24 H 0.08 3.15 7.95 -2.39 -0.02 3.14 16 25 H 0.07 3.19 8.14 -2.40 -0.02 3.17 16 26 H 0.26 13.85 8.32 -92.71 -0.77 13.08 16 27 H 0.10 3.24 8.08 -2.39 -0.02 3.22 16 28 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 29 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 30 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -62.32 281.02 3.20 -59.12 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: 1.13 Total: 8.31 kcal Atomic # 6 Polarization: -37.89 SS G_CDS: 4.47 Total: -33.42 kcal Atomic # 7 Polarization: -69.19 SS G_CDS: -3.13 Total: -72.32 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: -0.11 Total: -8.12 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Atomic # 16 Polarization: 3.11 SS G_CDS: -1.20 Total: 1.91 kcal Total: -62.32 3.20 -59.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235932206.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.759 kcal (2) G-P(sol) polarization free energy of solvation -62.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds