Wall clock time and date at job start Sun Mar 29 2020 22:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99792 * 2 1 4 4 H 1.48501 * 109.47419 * 270.00553 * 3 2 1 5 5 H 1.48498 * 109.47017 * 30.00834 * 3 2 1 6 6 H 1.48506 * 109.46847 * 150.00296 * 3 2 1 7 7 C 1.37874 * 120.00184 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00115 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00143 * 179.97438 * 7 2 1 10 10 C 1.52993 * 109.47423 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47706 * 179.97438 * 10 9 7 12 12 S 1.81402 * 109.47468 * 179.97438 * 11 10 9 13 13 C 1.76200 * 102.99723 * 179.97438 * 12 11 10 14 14 N 1.32466 * 120.14847 * 359.97438 * 13 12 11 15 15 C 1.32440 * 119.99421 * 180.02562 * 14 13 12 16 16 C 1.37905 * 120.28025 * 359.97438 * 15 14 13 17 17 N 1.32473 * 120.28889 * 0.02562 * 16 15 14 18 18 C 1.32383 * 120.00530 * 0.02562 * 17 16 15 19 19 N 1.39183 * 120.14003 * 179.97438 * 18 17 16 20 20 H 0.97004 * 120.00375 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47397 * 59.99398 * 9 7 2 22 22 H 1.08999 * 109.46855 * 299.99955 * 9 7 2 23 23 H 1.09000 * 109.47120 * 59.99480 * 10 9 7 24 24 H 1.09007 * 109.47125 * 299.99675 * 10 9 7 25 25 H 1.09000 * 109.47225 * 59.99582 * 11 10 9 26 26 H 1.08999 * 109.46744 * 300.00312 * 11 10 9 27 27 H 1.08006 * 119.86267 * 180.27167 * 15 14 13 28 28 H 1.08003 * 119.85243 * 179.97438 * 16 15 14 29 29 H 0.97007 * 119.99720 * 359.97438 * 19 18 17 30 30 H 0.96991 * 119.99940 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 6 5.5516 -2.6365 -0.0022 12 16 6.1563 -4.3467 -0.0013 13 6 7.9070 -4.1480 -0.0037 14 7 8.4389 -2.9348 -0.0060 15 6 9.7553 -2.7890 -0.0083 16 6 10.5775 -3.8961 -0.0077 17 7 10.0575 -5.1145 -0.0054 18 6 8.7433 -5.2735 -0.0041 19 7 8.1940 -6.5523 -0.0022 20 1 -0.4851 0.8401 0.0004 21 1 3.8752 -0.6803 0.8888 22 1 3.8745 -0.6800 -0.8911 23 1 3.6579 -3.1505 -0.8907 24 1 3.6587 -3.1501 0.8893 25 1 5.9156 -2.1222 0.8872 26 1 5.9141 -2.1229 -0.8927 27 1 10.1867 -1.7989 -0.0057 28 1 11.6500 -3.7692 -0.0100 29 1 8.7745 -7.3295 -0.0021 30 1 7.2308 -6.6664 -0.0009 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236352911.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:39 Heat of formation + Delta-G solvation = 30.971826 kcal Electronic energy + Delta-G solvation = -13877.082956 eV Core-core repulsion = 11412.010081 eV Total energy + Delta-G solvation = -2465.072875 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.93237 -35.61565 -34.60158 -33.78433 -32.09727 -29.81492 -28.05287 -24.99288 -23.90686 -23.02362 -20.28004 -18.41395 -17.86959 -17.62116 -16.66352 -15.69088 -15.31276 -15.19324 -14.64508 -14.45163 -14.00355 -13.34512 -12.57677 -12.26274 -12.20757 -11.89861 -11.62919 -11.34401 -11.05408 -10.83004 -10.46350 -9.97695 -9.79213 -9.70825 -9.24244 -9.21165 -8.87760 -8.55540 -7.32885 -6.05936 -4.04683 0.72556 1.14992 1.49665 2.38618 3.15201 3.30614 3.38123 3.41881 3.60348 4.20807 4.39269 4.44109 4.74517 5.06010 5.15901 5.27614 5.42611 5.49656 5.99567 6.06264 6.35476 6.46725 6.69516 6.77549 7.04020 7.22267 7.35095 7.37591 7.75148 7.80226 8.50793 8.98330 9.55991 11.07358 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.045276 B = 0.004687 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.280465 B = 5971.960557 C = 6564.492306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.073 0.927 9 C -0.006 4.006 10 C -0.091 4.091 11 C -0.080 4.080 12 S -0.090 6.090 13 C 0.022 3.978 14 N -0.411 5.411 15 C -0.004 4.004 16 C 0.085 3.915 17 N -0.496 5.496 18 C 0.379 3.621 19 N -0.833 5.833 20 H 0.263 0.737 21 H 0.019 0.981 22 H 0.014 0.986 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.167 0.833 28 H 0.169 0.831 29 H 0.406 0.594 30 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.938 -9.581 0.015 22.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.091 0.909 9 C -0.045 4.045 10 C -0.130 4.130 11 C -0.229 4.229 12 S 0.150 5.850 13 C -0.238 4.238 14 N -0.128 5.128 15 C -0.166 4.166 16 C -0.077 4.077 17 N -0.220 5.220 18 C 0.131 3.869 19 N -0.379 5.379 20 H 0.073 0.927 21 H 0.037 0.963 22 H 0.033 0.967 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.184 0.816 28 H 0.186 0.814 29 H 0.236 0.764 30 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 19.093 -10.400 0.020 21.742 hybrid contribution 1.118 1.798 -0.024 2.117 sum 20.211 -8.602 -0.003 21.966 Atomic orbital electron populations 1.69909 1.06302 1.26945 1.50983 1.25011 0.94728 0.99163 0.94475 0.86786 0.80398 0.83601 0.78575 1.20232 1.21338 1.18945 1.21095 0.89225 0.94600 1.51085 0.90898 1.19552 0.97231 0.91113 0.96643 1.21358 0.88231 1.01058 1.02376 1.23786 1.01160 0.91758 1.06156 1.85201 0.92108 1.16722 1.90999 1.23611 1.00457 0.91249 1.08494 1.68681 1.13787 1.21693 1.08688 1.23322 0.89292 1.00717 1.03289 1.23305 1.01482 0.87344 0.95528 1.67949 1.09888 1.26109 1.18026 1.18819 0.89052 0.86605 0.92473 1.42239 1.10400 1.03343 1.81914 0.92680 0.96305 0.96736 0.91712 0.91680 0.89385 0.89382 0.81553 0.81429 0.76351 0.75284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.82 13.96 55.43 0.77 -27.05 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.52 -14.82 9.66 -34.44 -0.33 -15.16 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.01 -0.14 4.04 -27.89 -0.11 -0.25 16 10 C -0.09 -1.77 5.16 -26.74 -0.14 -1.91 16 11 C -0.08 -1.34 5.23 37.16 0.19 -1.15 16 12 S -0.09 -1.30 20.47 -107.50 -2.20 -3.50 16 13 C 0.02 0.32 7.03 -16.54 -0.12 0.20 16 14 N -0.41 -5.98 9.60 -11.78 -0.11 -6.10 16 15 C 0.00 -0.04 11.20 -17.41 -0.20 -0.24 16 16 C 0.09 0.86 11.20 -17.40 -0.19 0.67 16 17 N -0.50 -6.05 10.52 -12.04 -0.13 -6.17 16 18 C 0.38 4.82 7.79 -154.45 -1.20 3.62 16 19 N -0.83 -7.99 9.03 31.38 0.28 -7.70 16 20 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 21 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 22 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 23 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 24 H 0.06 1.27 8.14 -51.92 -0.42 0.84 16 25 H 0.09 1.49 8.14 -51.92 -0.42 1.07 16 26 H 0.09 1.49 8.14 -51.92 -0.42 1.06 16 27 H 0.17 1.34 8.06 -52.48 -0.42 0.92 16 28 H 0.17 1.04 8.06 -52.48 -0.42 0.61 16 29 H 0.41 3.01 8.96 -40.82 -0.37 2.64 16 30 H 0.41 3.68 7.38 -40.82 -0.30 3.38 16 LS Contribution 274.67 15.07 4.14 4.14 Total: -1.00 -32.45 274.67 -7.67 -40.12 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -3.56 Total: 1.58 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -2.20 Total: -12.34 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: 0.82 Total: -47.02 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Atomic # 16 Polarization: -1.30 SS G_CDS: -2.20 Total: -3.50 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -32.45 -7.67 -40.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236352911.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.093 kcal (2) G-P(sol) polarization free energy of solvation -32.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds