Wall clock time and date at job start Sun Mar 29 2020 22:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99792 * 2 1 4 4 H 1.48501 * 109.47419 * 270.00553 * 3 2 1 5 5 H 1.48498 * 109.47017 * 30.00834 * 3 2 1 6 6 H 1.48506 * 109.46847 * 150.00296 * 3 2 1 7 7 C 1.37874 * 120.00184 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00115 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00143 * 179.97438 * 7 2 1 10 10 C 1.52993 * 109.47423 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47706 * 179.97438 * 10 9 7 12 12 S 1.81402 * 109.47468 * 179.97438 * 11 10 9 13 13 C 1.76200 * 102.99723 * 179.97438 * 12 11 10 14 14 N 1.32466 * 120.14847 * 359.97438 * 13 12 11 15 15 C 1.32440 * 119.99421 * 180.02562 * 14 13 12 16 16 C 1.37905 * 120.28025 * 359.97438 * 15 14 13 17 17 N 1.32473 * 120.28889 * 0.02562 * 16 15 14 18 18 C 1.32383 * 120.00530 * 0.02562 * 17 16 15 19 19 N 1.39183 * 120.14003 * 179.97438 * 18 17 16 20 20 H 0.97004 * 120.00375 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47397 * 59.99398 * 9 7 2 22 22 H 1.08999 * 109.46855 * 299.99955 * 9 7 2 23 23 H 1.09000 * 109.47120 * 59.99480 * 10 9 7 24 24 H 1.09007 * 109.47125 * 299.99675 * 10 9 7 25 25 H 1.09000 * 109.47225 * 59.99582 * 11 10 9 26 26 H 1.08999 * 109.46744 * 300.00312 * 11 10 9 27 27 H 1.08006 * 119.86267 * 180.27167 * 15 14 13 28 28 H 1.08003 * 119.85243 * 179.97438 * 16 15 14 29 29 H 0.97007 * 119.99720 * 359.97438 * 19 18 17 30 30 H 0.96991 * 119.99940 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 6 5.5516 -2.6365 -0.0022 12 16 6.1563 -4.3467 -0.0013 13 6 7.9070 -4.1480 -0.0037 14 7 8.4389 -2.9348 -0.0060 15 6 9.7553 -2.7890 -0.0083 16 6 10.5775 -3.8961 -0.0077 17 7 10.0575 -5.1145 -0.0054 18 6 8.7433 -5.2735 -0.0041 19 7 8.1940 -6.5523 -0.0022 20 1 -0.4851 0.8401 0.0004 21 1 3.8752 -0.6803 0.8888 22 1 3.8745 -0.6800 -0.8911 23 1 3.6579 -3.1505 -0.8907 24 1 3.6587 -3.1501 0.8893 25 1 5.9156 -2.1222 0.8872 26 1 5.9141 -2.1229 -0.8927 27 1 10.1867 -1.7989 -0.0057 28 1 11.6500 -3.7692 -0.0100 29 1 8.7745 -7.3295 -0.0021 30 1 7.2308 -6.6664 -0.0009 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236352911.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:38 Heat of formation + Delta-G solvation = 8.173474 kcal Electronic energy + Delta-G solvation = -13878.071566 eV Core-core repulsion = 11412.010081 eV Total energy + Delta-G solvation = -2466.061486 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.81948 -36.59067 -36.28530 -34.67424 -34.16315 -30.68137 -29.89942 -25.91195 -25.26555 -24.39488 -22.04006 -19.35447 -19.06695 -18.61785 -18.42553 -16.63042 -16.45762 -16.43011 -15.96587 -15.95169 -15.22758 -14.71998 -14.22071 -13.93803 -13.83366 -13.07318 -12.90000 -12.69818 -12.55326 -11.95554 -11.88271 -11.76324 -11.58298 -11.37318 -11.31639 -10.76601 -10.16511 -9.81150 -8.33129 -8.29395 -6.34104 -0.16216 0.25238 0.40669 1.22081 1.37157 1.38801 1.50894 2.34001 2.36650 2.72218 3.06056 3.36874 3.53043 3.95023 4.00743 4.03482 4.24500 4.45202 4.50944 4.73628 4.86596 5.00638 5.29996 5.41716 5.50784 5.63611 5.87668 6.26777 6.27202 6.53284 6.73448 6.98281 7.30619 8.87336 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.045276 B = 0.004687 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.280465 B = 5971.960557 C = 6564.492306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.005 3.995 3 Si 0.950 3.050 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.246 1.246 7 C -0.534 4.534 8 H 0.034 0.966 9 C -0.004 4.004 10 C -0.081 4.081 11 C -0.074 4.074 12 S -0.080 6.080 13 C -0.011 4.011 14 N -0.437 5.437 15 C -0.012 4.012 16 C 0.101 3.899 17 N -0.508 5.508 18 C 0.373 3.627 19 N -0.822 5.822 20 H 0.267 0.733 21 H 0.023 0.977 22 H 0.022 0.978 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.198 0.802 28 H 0.212 0.788 29 H 0.417 0.583 30 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.134 -9.071 -0.002 24.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.773 3.227 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.170 1.170 7 C -0.573 4.573 8 H 0.052 0.948 9 C -0.044 4.044 10 C -0.120 4.120 11 C -0.223 4.223 12 S 0.158 5.842 13 C -0.270 4.270 14 N -0.155 5.155 15 C -0.175 4.175 16 C -0.061 4.061 17 N -0.232 5.232 18 C 0.124 3.876 19 N -0.369 5.369 20 H 0.076 0.924 21 H 0.042 0.958 22 H 0.040 0.960 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.104 0.896 26 H 0.105 0.895 27 H 0.214 0.786 28 H 0.228 0.772 29 H 0.249 0.751 30 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 22.279 -9.950 0.004 24.400 hybrid contribution 0.241 1.543 -0.020 1.561 sum 22.520 -8.407 -0.016 24.038 Atomic orbital electron populations 1.70064 1.08316 1.28223 1.52547 1.26004 0.95608 1.03527 0.94023 0.85657 0.79527 0.78200 0.79284 1.19078 1.20914 1.16958 1.21458 0.91918 0.93277 1.50599 0.94786 1.19482 0.93968 0.93954 0.96958 1.21112 0.90507 0.98438 1.01983 1.23440 0.98851 0.93986 1.05983 1.84977 0.93352 1.13990 1.91849 1.23517 0.99904 0.92059 1.11553 1.68600 1.15683 1.22055 1.09148 1.23912 0.88322 1.02626 1.02656 1.24057 1.03406 0.86315 0.92358 1.68093 1.09379 1.27186 1.18567 1.18945 0.89287 0.87033 0.92289 1.42233 1.10769 1.02948 1.80907 0.92436 0.95848 0.95952 0.92137 0.92145 0.89580 0.89507 0.78562 0.77152 0.75081 0.74995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.05 13.96 21.45 0.30 -59.75 16 2 C 0.01 0.31 5.47 84.65 0.46 0.77 16 3 Si 0.95 44.39 27.47 68.60 1.88 46.27 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.25 -10.67 6.54 99.48 0.65 -10.02 16 7 C -0.53 -31.06 9.66 25.60 0.25 -30.82 16 8 H 0.03 2.17 7.99 -2.91 -0.02 2.14 16 9 C 0.00 -0.20 4.04 29.85 0.12 -0.08 16 10 C -0.08 -3.18 5.16 30.59 0.16 -3.02 16 11 C -0.07 -2.43 5.23 71.98 0.38 -2.05 16 12 S -0.08 -2.27 20.47 -56.49 -1.16 -3.43 16 13 C -0.01 -0.32 7.03 85.08 0.60 0.28 16 14 N -0.44 -11.96 9.60 -191.17 -1.83 -13.79 16 15 C -0.01 -0.23 11.20 84.52 0.95 0.72 16 16 C 0.10 1.69 11.20 84.52 0.95 2.63 16 17 N -0.51 -11.03 10.52 -192.02 -2.02 -13.05 16 18 C 0.37 8.85 7.79 133.27 1.04 9.88 16 19 N -0.82 -14.59 9.03 -54.64 -0.49 -15.08 16 20 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 21 H 0.02 1.07 7.20 -2.39 -0.02 1.05 16 22 H 0.02 1.01 7.57 -2.39 -0.02 0.99 16 23 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 24 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 25 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 26 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 27 H 0.20 2.41 8.06 -2.91 -0.02 2.39 16 28 H 0.21 1.53 8.06 -2.91 -0.02 1.51 16 29 H 0.42 5.47 8.96 -92.70 -0.83 4.64 16 30 H 0.42 6.96 7.38 -92.72 -0.68 6.28 16 Total: -1.00 -70.88 274.67 1.17 -69.71 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -0.40 Total: 10.81 kcal Atomic # 6 Polarization: -26.58 SS G_CDS: 4.89 Total: -21.68 kcal Atomic # 7 Polarization: -97.63 SS G_CDS: -4.05 Total: -101.68 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.88 Total: 46.27 kcal Atomic # 16 Polarization: -2.27 SS G_CDS: -1.16 Total: -3.43 kcal Total: -70.88 1.17 -69.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236352911.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.883 kcal (2) G-P(sol) polarization free energy of solvation -70.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds