Wall clock time and date at job start Sun Mar 29 2020 22:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00169 * 2 1 4 4 H 1.48504 * 109.47095 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47035 * 299.99956 * 3 2 1 6 6 H 1.48496 * 109.47010 * 60.00207 * 3 2 1 7 7 C 1.37880 * 119.99808 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99782 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99887 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.46715 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99596 * 180.02562 * 10 9 7 12 12 O 1.21606 * 120.00473 * 359.97438 * 11 10 9 13 13 C 1.47394 * 119.99784 * 179.97438 * 11 10 9 14 14 C 1.40222 * 120.21163 * 269.99671 * 13 11 10 15 15 O 1.35652 * 120.13891 * 0.27641 * 14 13 11 16 16 C 1.38595 * 119.72594 * 180.02562 * 14 13 11 17 17 C 1.38176 * 120.15635 * 0.02562 * 16 14 13 18 18 C 1.38369 * 120.43421 * 359.97438 * 17 16 14 19 19 C 1.38172 * 120.27378 * 0.02562 * 18 17 16 20 20 F 1.35093 * 120.08641 * 179.97438 * 19 18 17 21 21 H 0.97001 * 119.99688 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.47275 * 60.00560 * 9 7 2 23 23 H 1.09000 * 109.47229 * 299.99698 * 9 7 2 24 24 H 0.96999 * 120.00426 * 359.97438 * 10 9 7 25 25 H 0.96710 * 114.00445 * 269.72578 * 15 14 13 26 26 H 1.07999 * 119.92166 * 180.02562 * 16 14 13 27 27 H 1.07994 * 119.78255 * 180.02562 * 17 16 14 28 28 H 1.08004 * 119.86629 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 7 2.2030 -3.6127 -0.0015 11 6 1.7537 -4.8833 -0.0029 12 8 0.5581 -5.1056 -0.0039 13 6 2.7115 -6.0037 -0.0032 14 6 3.1708 -6.5389 -1.2151 15 8 2.7398 -6.0242 -2.3939 16 6 4.0709 -7.5927 -1.2037 17 6 4.5138 -8.1143 -0.0033 18 6 4.0649 -7.5911 1.1965 19 6 3.1674 -6.5406 1.2059 20 9 2.7312 -6.0331 2.3794 21 1 -0.4850 0.8401 -0.0004 22 1 0.6247 -2.5563 -0.8920 23 1 0.6240 -2.5575 0.8880 24 1 3.1567 -3.4355 -0.0010 25 1 1.9433 -6.4490 -2.7409 26 1 4.4270 -8.0071 -2.1353 27 1 5.2156 -8.9352 -0.0014 28 1 4.4167 -8.0062 2.1294 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236599357.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:04 Heat of formation + Delta-G solvation = -103.569148 kcal Electronic energy + Delta-G solvation = -16380.887276 eV Core-core repulsion = 13311.474340 eV Total energy + Delta-G solvation = -3069.412937 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.90816 -40.03613 -38.15946 -36.64391 -34.20299 -32.37603 -31.04328 -29.88695 -27.25655 -24.14144 -22.75180 -22.29186 -20.03556 -18.76333 -17.78414 -16.94944 -16.48477 -15.98563 -15.74150 -15.13774 -15.04536 -14.69958 -14.20535 -14.01344 -13.71485 -13.01161 -12.42881 -12.13539 -12.00203 -11.87940 -11.62001 -10.98219 -10.96323 -10.88590 -10.33308 -9.41848 -9.29766 -8.95889 -8.81027 -8.74125 -7.92947 -6.15694 -4.22302 0.83046 0.93866 3.13774 3.21976 3.25228 3.32079 3.35821 3.79061 4.00283 4.31093 4.36811 4.66040 4.90439 5.01845 5.19629 5.20685 5.51938 5.77799 5.87340 6.01106 6.07925 6.54530 7.27533 7.35872 7.50456 7.51292 7.65758 7.96172 8.55911 8.74179 9.00028 9.43633 10.94667 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.034177 B = 0.005878 C = 0.005705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.057015 B = 4762.131684 C = 4906.911947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.542 4.542 8 H 0.064 0.936 9 C 0.248 3.752 10 N -0.693 5.693 11 C 0.552 3.448 12 O -0.547 6.547 13 C -0.179 4.179 14 C 0.170 3.830 15 O -0.486 6.486 16 C -0.160 4.160 17 C -0.067 4.067 18 C -0.168 4.168 19 C 0.147 3.853 20 F -0.125 7.125 21 H 0.265 0.735 22 H 0.030 0.970 23 H 0.029 0.971 24 H 0.393 0.607 25 H 0.400 0.600 26 H 0.139 0.861 27 H 0.139 0.861 28 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.944 -15.743 -1.193 18.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.082 0.918 9 C 0.128 3.872 10 N -0.339 5.339 11 C 0.335 3.665 12 O -0.426 6.426 13 C -0.184 4.184 14 C 0.123 3.877 15 O -0.297 6.297 16 C -0.179 4.179 17 C -0.085 4.085 18 C -0.187 4.187 19 C 0.126 3.874 20 F -0.103 7.103 21 H 0.075 0.925 22 H 0.048 0.952 23 H 0.047 0.953 24 H 0.226 0.774 25 H 0.258 0.742 26 H 0.157 0.843 27 H 0.157 0.843 28 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 9.358 -15.317 -1.095 17.983 hybrid contribution 0.356 0.826 0.150 0.912 sum 9.714 -14.491 -0.944 17.471 Atomic orbital electron populations 1.69987 1.06104 1.27214 1.49001 1.24952 0.94934 0.99470 0.94660 0.86336 0.79866 0.82839 0.77737 1.19594 1.20761 1.20780 1.21249 0.93358 0.90299 1.53109 0.91770 1.19203 0.88265 0.81768 0.97963 1.46454 1.11443 1.05598 1.70399 1.17744 0.87556 0.83087 0.78161 1.90780 1.15667 1.84813 1.51337 1.20718 1.02595 1.02053 0.93010 1.18165 0.94030 0.91397 0.84066 1.84749 1.48615 1.62262 1.34101 1.21413 1.00266 0.96795 0.99436 1.20920 0.98016 0.98745 0.90841 1.21086 0.99685 0.97639 1.00270 1.17514 0.95395 0.94189 0.80260 1.91569 1.87925 1.86090 1.44746 0.92485 0.95191 0.95256 0.77427 0.74161 0.84285 0.84317 0.84059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.46 13.29 55.43 0.74 -25.72 15 2 C 0.06 1.79 5.46 -17.82 -0.10 1.70 15 3 Si 0.91 21.26 29.54 -169.99 -5.02 16.24 15 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 15 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 7 C -0.54 -15.16 9.28 -34.44 -0.32 -15.48 15 8 H 0.06 1.70 7.60 -52.48 -0.40 1.30 15 9 C 0.25 6.84 5.43 -5.19 -0.03 6.81 15 10 N -0.69 -15.91 5.55 -62.57 -0.35 -16.25 15 11 C 0.55 12.12 6.43 -12.53 -0.08 12.04 15 12 O -0.55 -13.98 17.11 5.27 0.09 -13.89 15 13 C -0.18 -3.05 5.64 -104.79 -0.59 -3.64 15 14 C 0.17 2.37 6.72 -38.70 -0.26 2.11 15 15 O -0.49 -6.76 12.95 -18.66 -0.24 -7.00 15 16 C -0.16 -1.65 9.97 -39.47 -0.39 -2.04 15 17 C -0.07 -0.60 10.02 -39.56 -0.40 -1.00 15 18 C -0.17 -1.83 10.00 -39.56 -0.40 -2.23 15 19 C 0.15 2.23 7.29 -38.97 -0.28 1.95 15 20 F -0.13 -2.16 16.83 2.25 0.04 -2.12 15 21 H 0.27 7.39 8.31 -40.82 -0.34 7.06 15 22 H 0.03 0.90 8.14 -51.93 -0.42 0.48 15 23 H 0.03 0.89 8.14 -51.93 -0.42 0.46 15 24 H 0.39 8.09 8.31 -40.82 -0.34 7.75 15 25 H 0.40 3.95 9.06 45.56 0.41 4.36 15 26 H 0.14 1.07 8.06 -52.49 -0.42 0.64 15 27 H 0.14 0.75 8.06 -52.49 -0.42 0.33 15 28 H 0.14 1.17 8.06 -52.48 -0.42 0.75 15 LS Contribution 266.55 15.07 4.02 4.02 Total: -1.00 -34.33 266.55 -5.15 -39.48 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -1.57 Total: 5.03 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -2.85 Total: 0.22 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 0.39 Total: -41.98 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.15 Total: -20.89 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -34.33 -5.15 -39.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236599357.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.093 kcal (2) G-P(sol) polarization free energy of solvation -34.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds