Wall clock time and date at job start Sun Mar 29 2020 22:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00169 * 2 1 4 4 H 1.48504 * 109.47095 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47035 * 299.99956 * 3 2 1 6 6 H 1.48496 * 109.47010 * 60.00207 * 3 2 1 7 7 C 1.37880 * 119.99808 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99782 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99887 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.46715 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99596 * 180.02562 * 10 9 7 12 12 O 1.21606 * 120.00473 * 359.97438 * 11 10 9 13 13 C 1.47394 * 119.99784 * 179.97438 * 11 10 9 14 14 C 1.40222 * 120.21163 * 269.99671 * 13 11 10 15 15 O 1.35652 * 120.13891 * 0.27641 * 14 13 11 16 16 C 1.38595 * 119.72594 * 180.02562 * 14 13 11 17 17 C 1.38176 * 120.15635 * 0.02562 * 16 14 13 18 18 C 1.38369 * 120.43421 * 359.97438 * 17 16 14 19 19 C 1.38172 * 120.27378 * 0.02562 * 18 17 16 20 20 F 1.35093 * 120.08641 * 179.97438 * 19 18 17 21 21 H 0.97001 * 119.99688 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.47275 * 60.00560 * 9 7 2 23 23 H 1.09000 * 109.47229 * 299.99698 * 9 7 2 24 24 H 0.96999 * 120.00426 * 359.97438 * 10 9 7 25 25 H 0.96710 * 114.00445 * 269.72578 * 15 14 13 26 26 H 1.07999 * 119.92166 * 180.02562 * 16 14 13 27 27 H 1.07994 * 119.78255 * 180.02562 * 17 16 14 28 28 H 1.08004 * 119.86629 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 7 2.2030 -3.6127 -0.0015 11 6 1.7537 -4.8833 -0.0029 12 8 0.5581 -5.1056 -0.0039 13 6 2.7115 -6.0037 -0.0032 14 6 3.1708 -6.5389 -1.2151 15 8 2.7398 -6.0242 -2.3939 16 6 4.0709 -7.5927 -1.2037 17 6 4.5138 -8.1143 -0.0033 18 6 4.0649 -7.5911 1.1965 19 6 3.1674 -6.5406 1.2059 20 9 2.7312 -6.0331 2.3794 21 1 -0.4850 0.8401 -0.0004 22 1 0.6247 -2.5563 -0.8920 23 1 0.6240 -2.5575 0.8880 24 1 3.1567 -3.4355 -0.0010 25 1 1.9433 -6.4490 -2.7409 26 1 4.4270 -8.0071 -2.1353 27 1 5.2156 -8.9352 -0.0014 28 1 4.4167 -8.0062 2.1294 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236599357.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:04 Heat of formation + Delta-G solvation = -131.368811 kcal Electronic energy + Delta-G solvation = -16382.092760 eV Core-core repulsion = 13311.474340 eV Total energy + Delta-G solvation = -3070.618420 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.11457 -41.31681 -39.72274 -37.62834 -36.27028 -34.45818 -32.25904 -30.83713 -29.30448 -25.69438 -24.06700 -23.73188 -21.73314 -19.95762 -19.32824 -18.14632 -17.91439 -17.54252 -17.26141 -16.72192 -16.45052 -15.91146 -15.83891 -15.60725 -14.85501 -14.75806 -14.11317 -13.95815 -13.29332 -13.13756 -12.94499 -12.78941 -12.72187 -12.28379 -12.04002 -11.53810 -11.06860 -10.87495 -10.05126 -10.01686 -9.75498 -8.34097 -6.51582 -0.17932 0.00701 1.40238 1.41118 1.43212 1.55914 2.19214 2.34613 2.47744 2.83473 3.00396 3.34682 3.62202 3.89411 3.97342 4.24438 4.57605 4.78175 4.98799 4.99861 5.12936 5.16793 5.22347 5.34549 5.54478 5.67950 5.76030 6.55540 6.60431 6.67108 7.11059 7.25876 8.78586 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.034177 B = 0.005878 C = 0.005705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.057015 B = 4762.131684 C = 4906.911947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.989 3.011 4 H -0.255 1.255 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.559 4.559 8 H 0.081 0.919 9 C 0.266 3.734 10 N -0.692 5.692 11 C 0.553 3.447 12 O -0.595 6.595 13 C -0.216 4.216 14 C 0.159 3.841 15 O -0.504 6.504 16 C -0.143 4.143 17 C -0.040 4.040 18 C -0.153 4.153 19 C 0.118 3.882 20 F -0.148 7.148 21 H 0.271 0.729 22 H -0.006 1.006 23 H -0.011 1.011 24 H 0.405 0.595 25 H 0.413 0.587 26 H 0.176 0.824 27 H 0.193 0.807 28 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.429 -17.237 -1.615 21.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.195 4.195 3 Si 0.812 3.188 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.202 1.202 7 C -0.597 4.597 8 H 0.099 0.901 9 C 0.143 3.857 10 N -0.339 5.339 11 C 0.339 3.661 12 O -0.477 6.477 13 C -0.221 4.221 14 C 0.113 3.887 15 O -0.317 6.317 16 C -0.161 4.161 17 C -0.057 4.057 18 C -0.172 4.172 19 C 0.098 3.902 20 F -0.127 7.127 21 H 0.080 0.920 22 H 0.012 0.988 23 H 0.007 0.993 24 H 0.240 0.760 25 H 0.273 0.727 26 H 0.193 0.807 27 H 0.210 0.790 28 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 12.876 -16.848 -1.523 21.259 hybrid contribution -0.722 1.142 0.250 1.374 sum 12.154 -15.706 -1.273 19.900 Atomic orbital electron populations 1.70141 1.08250 1.28702 1.49620 1.26098 0.95870 1.03952 0.93563 0.85050 0.78915 0.76947 0.77931 1.17850 1.20024 1.20161 1.21586 0.94176 0.90461 1.53457 0.90136 1.18659 0.88569 0.84043 0.94381 1.46252 1.11272 1.05392 1.71003 1.18556 0.87949 0.83791 0.75801 1.90725 1.18348 1.85626 1.52990 1.20448 1.04222 1.01803 0.95591 1.18453 0.95017 0.92497 0.82735 1.84703 1.49505 1.63368 1.34157 1.21816 0.97933 0.94609 1.01761 1.21579 0.96650 0.98445 0.89066 1.21512 0.97481 0.95406 1.02775 1.17956 0.97387 0.96043 0.78814 1.91505 1.88569 1.86772 1.45851 0.92039 0.98827 0.99279 0.75975 0.72652 0.80689 0.78956 0.80907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.43 13.29 21.45 0.28 -57.14 15 2 C 0.00 0.29 5.46 84.66 0.46 0.75 15 3 Si 0.99 43.69 29.54 68.60 2.03 45.71 15 4 H -0.26 -10.51 7.11 99.48 0.71 -9.80 15 5 H -0.27 -11.78 7.11 99.48 0.71 -11.08 15 6 H -0.28 -11.89 7.11 99.48 0.71 -11.18 15 7 C -0.56 -32.18 9.28 25.60 0.24 -31.95 15 8 H 0.08 4.26 7.60 -2.91 -0.02 4.24 15 9 C 0.27 15.67 5.43 85.63 0.46 16.13 15 10 N -0.69 -33.68 5.55 -470.14 -2.61 -36.28 15 11 C 0.55 25.82 6.43 86.65 0.56 26.37 15 12 O -0.59 -32.78 17.11 -4.05 -0.07 -32.85 15 13 C -0.22 -7.47 5.64 -19.97 -0.11 -7.58 15 14 C 0.16 4.23 6.72 22.84 0.15 4.38 15 15 O -0.50 -13.85 12.95 -89.67 -1.16 -15.01 15 16 C -0.14 -2.29 9.97 22.34 0.22 -2.06 15 17 C -0.04 -0.48 10.02 22.29 0.22 -0.26 15 18 C -0.15 -2.76 10.00 22.29 0.22 -2.53 15 19 C 0.12 3.53 7.29 22.67 0.17 3.69 15 20 F -0.15 -5.28 16.83 44.97 0.76 -4.52 15 21 H 0.27 15.47 8.31 -92.71 -0.77 14.70 15 22 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 15 23 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 15 24 H 0.41 17.37 8.31 -92.71 -0.77 16.60 15 25 H 0.41 8.24 9.06 -74.05 -0.67 7.57 15 26 H 0.18 1.62 8.06 -2.91 -0.02 1.59 15 27 H 0.19 0.43 8.06 -2.91 -0.02 0.40 15 28 H 0.17 2.02 8.06 -2.91 -0.02 1.99 15 Total: -1.00 -80.86 266.55 1.60 -79.26 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -0.22 Total: 13.89 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: 2.60 Total: 6.95 kcal Atomic # 7 Polarization: -91.10 SS G_CDS: -2.32 Total: -93.42 kcal Atomic # 8 Polarization: -46.63 SS G_CDS: -1.23 Total: -47.86 kcal Atomic # 9 Polarization: -5.28 SS G_CDS: 0.76 Total: -4.52 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -80.86 1.60 -79.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236599357.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.112 kcal (2) G-P(sol) polarization free energy of solvation -80.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds