Wall clock time and date at job start Sun Mar 29 2020 22:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38418 * 122.54038 * 2 1 4 4 C 1.33388 * 114.92208 * 179.97438 * 3 2 1 5 5 S 1.75883 * 109.59195 * 359.97438 * 4 3 2 6 6 C 1.33391 * 122.53597 * 179.97438 * 2 1 3 7 7 C 1.50699 * 125.20622 * 0.05046 * 6 2 1 8 8 N 1.46502 * 109.47157 * 89.98725 * 7 6 2 9 9 C 1.46499 * 120.00015 * 270.00366 * 8 7 6 10 10 C 1.34775 * 120.00208 * 89.99899 * 8 7 6 11 11 O 1.21688 * 119.99885 * 0.02562 * 10 8 7 12 12 C 1.46372 * 120.00205 * 180.02562 * 10 8 7 13 13 H 1.08005 * 120.00035 * 355.24168 * 12 10 8 14 14 C 1.40044 * 120.00092 * 175.24287 * 12 10 8 15 15 N 1.30670 * 119.99828 * 6.28573 * 14 12 10 16 16 Si 1.86799 * 119.99950 * 186.27829 * 14 12 10 17 17 H 1.48506 * 109.46834 * 94.98714 * 16 14 12 18 18 H 1.48504 * 109.47446 * 214.98273 * 16 14 12 19 19 H 1.48496 * 109.47369 * 334.98766 * 16 14 12 20 20 H 1.09008 * 109.46778 * 270.02018 * 1 2 3 21 21 H 1.08999 * 109.46904 * 30.01486 * 1 2 3 22 22 H 1.08996 * 109.47642 * 150.02193 * 1 2 3 23 23 H 1.07998 * 122.54461 * 359.96197 * 3 2 1 24 24 H 1.07999 * 125.20420 * 180.02562 * 4 3 2 25 25 H 1.09000 * 109.46976 * 209.98871 * 7 6 2 26 26 H 1.09001 * 109.47102 * 329.98869 * 7 6 2 27 27 H 1.08996 * 109.47276 * 89.99442 * 9 8 7 28 28 H 1.08994 * 109.47261 * 209.99702 * 9 8 7 29 29 H 1.09012 * 109.46854 * 329.99994 * 9 8 7 30 30 H 0.97010 * 119.99529 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1669 0.0000 4 6 3.5737 0.9900 0.0005 5 16 3.9386 -0.7305 0.0018 6 6 2.2244 -1.1246 0.0005 7 6 1.6536 -2.5193 0.0000 8 7 1.4694 -2.9711 -1.3813 9 6 0.2031 -2.7163 -2.0726 10 6 2.4648 -3.6210 -2.0163 11 8 3.5165 -3.8329 -1.4419 12 6 2.2810 -4.0719 -3.3966 13 1 1.3228 -3.9527 -3.8805 14 6 3.3475 -4.6578 -4.0898 15 7 4.4681 -4.9145 -3.4687 16 14 3.1679 -5.0728 -5.9022 17 1 3.7109 -3.9592 -6.7211 18 1 3.9183 -6.3188 -6.2016 19 1 1.7319 -5.2700 -6.2250 20 1 -0.3633 0.0004 1.0278 21 1 -0.3633 0.8899 -0.5141 22 1 -0.3634 -0.8901 -0.5135 23 1 1.7966 2.1464 -0.0006 24 1 4.3078 1.7822 0.0010 25 1 2.3394 -3.1927 0.5142 26 1 0.6920 -2.5185 0.5133 27 1 0.2562 -1.7565 -2.5862 28 1 0.0204 -3.5077 -2.7995 29 1 -0.6095 -2.6953 -1.3463 30 1 5.2067 -5.3207 -3.9488 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258618715.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:56 Heat of formation + Delta-G solvation = -25.702458 kcal Electronic energy + Delta-G solvation = -14991.276253 eV Core-core repulsion = 12491.453045 eV Total energy + Delta-G solvation = -2499.823207 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.01649 -38.80604 -35.81090 -34.56602 -32.19102 -30.35264 -28.29208 -26.95092 -25.60069 -23.40825 -21.29838 -19.24339 -18.25530 -18.15304 -17.59013 -16.43333 -16.18856 -15.87710 -15.22625 -14.63258 -14.40162 -14.05843 -13.66270 -13.42974 -13.28987 -13.05992 -13.04358 -12.76625 -12.72380 -12.42384 -12.32577 -12.00609 -11.98309 -11.40253 -10.91601 -9.87829 -9.43824 -9.23265 -9.07418 -8.26822 -6.80818 0.15447 0.86098 1.31514 1.38734 1.39817 1.55041 1.83944 2.24792 2.49261 3.00642 3.62539 4.06968 4.12668 4.19811 4.54058 4.59633 4.62730 4.68596 4.79029 4.90475 4.96088 5.03218 5.21419 5.22874 5.39745 5.59671 5.71498 5.83004 6.15752 6.39095 6.90310 7.43470 8.50428 8.69869 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.031253 B = 0.007815 C = 0.007093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.685738 B = 3581.778143 C = 3946.710715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.106 4.106 3 C -0.134 4.134 4 C -0.223 4.223 5 S 0.041 5.959 6 C -0.198 4.198 7 C 0.195 3.805 8 N -0.643 5.643 9 C 0.101 3.899 10 C 0.540 3.460 11 O -0.618 6.618 12 C -0.570 4.570 13 H 0.091 0.909 14 C 0.030 3.970 15 N -0.820 5.820 16 Si 0.991 3.009 17 H -0.267 1.267 18 H -0.273 1.273 19 H -0.246 1.246 20 H 0.085 0.915 21 H 0.083 0.917 22 H 0.066 0.934 23 H 0.169 0.831 24 H 0.184 0.816 25 H 0.046 0.954 26 H 0.112 0.888 27 H 0.038 0.962 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.336 10.595 3.821 14.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.165 4.165 4 C -0.358 4.358 5 S 0.306 5.694 6 C -0.317 4.317 7 C 0.070 3.930 8 N -0.379 5.379 9 C -0.042 4.042 10 C 0.345 3.655 11 O -0.504 6.504 12 C -0.606 4.606 13 H 0.109 0.891 14 C -0.185 4.185 15 N -0.449 5.449 16 Si 0.811 3.189 17 H -0.192 1.192 18 H -0.198 1.198 19 H -0.169 1.169 20 H 0.103 0.897 21 H 0.102 0.898 22 H 0.085 0.915 23 H 0.187 0.813 24 H 0.201 0.799 25 H 0.064 0.936 26 H 0.130 0.870 27 H 0.056 0.944 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.244 9.539 4.145 12.675 hybrid contribution -0.552 0.425 -0.672 0.968 sum -7.796 9.965 3.473 13.120 Atomic orbital electron populations 1.20660 0.87529 1.03650 1.03301 1.19265 0.98993 0.90890 1.02794 1.20344 0.92513 0.99989 1.03608 1.25935 1.00871 0.98255 1.10777 1.85194 1.09229 1.02070 1.72884 1.24986 0.94818 1.00596 1.11301 1.19499 1.00260 0.88071 0.85161 1.47927 1.16412 1.60501 1.13053 1.21629 0.84720 1.00344 0.97510 1.18624 0.82014 0.77283 0.87568 1.90554 1.28960 1.62097 1.68832 1.21526 0.99579 1.42296 0.97226 0.89108 1.26937 0.93881 0.92675 1.05056 1.70203 1.04114 1.31782 1.38817 0.85104 0.80077 0.78093 0.75652 1.19214 1.19824 1.16855 0.89677 0.89844 0.91475 0.81349 0.79895 0.93561 0.87038 0.94381 0.91769 0.89702 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.99 9.60 71.24 0.68 -1.31 16 2 C -0.11 -3.20 5.80 -20.92 -0.12 -3.32 16 3 C -0.13 -3.65 9.98 21.21 0.21 -3.44 16 4 C -0.22 -6.72 11.23 66.72 0.75 -5.97 16 5 S 0.04 1.66 23.33 -56.49 -1.32 0.34 16 6 C -0.20 -7.53 6.09 24.59 0.15 -7.38 16 7 C 0.20 7.81 5.38 85.63 0.46 8.27 16 8 N -0.64 -29.23 2.86 -856.27 -2.45 -31.67 16 9 C 0.10 3.51 8.94 127.77 1.14 4.65 16 10 C 0.54 31.40 7.61 86.36 0.66 32.06 16 11 O -0.62 -41.16 14.62 -4.31 -0.06 -41.22 16 12 C -0.57 -32.40 8.76 24.83 0.22 -32.18 16 13 H 0.09 4.62 5.96 -2.91 -0.02 4.61 16 14 C 0.03 1.67 5.49 85.30 0.47 2.14 16 15 N -0.82 -50.79 11.85 21.83 0.26 -50.53 16 16 Si 0.99 41.53 29.56 68.60 2.03 43.56 16 17 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 18 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 19 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 20 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 21 H 0.08 1.46 8.13 -2.39 -0.02 1.44 16 22 H 0.07 1.50 4.84 -2.39 -0.01 1.49 16 23 H 0.17 3.29 8.06 -2.91 -0.02 3.26 16 24 H 0.18 4.32 8.06 -2.91 -0.02 4.29 16 25 H 0.05 2.15 7.42 -2.39 -0.02 2.13 16 26 H 0.11 3.45 7.07 -2.39 -0.02 3.44 16 27 H 0.04 1.27 8.13 -2.39 -0.02 1.26 16 28 H 0.06 2.33 6.04 -2.39 -0.01 2.32 16 29 H 0.08 2.21 6.99 -2.38 -0.02 2.19 16 30 H 0.27 15.35 8.29 -92.70 -0.77 14.58 16 Total: -1.00 -77.00 269.53 4.23 -72.77 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 1.15 Total: 13.24 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: 4.62 Total: -6.49 kcal Atomic # 7 Polarization: -80.01 SS G_CDS: -2.19 Total: -82.20 kcal Atomic # 8 Polarization: -41.16 SS G_CDS: -0.06 Total: -41.22 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -1.32 Total: 0.34 kcal Total: -77.00 4.23 -72.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258618715.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.066 kcal (2) G-P(sol) polarization free energy of solvation -76.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds