Wall clock time and date at job start Sun Mar 29 2020 22:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38421 * 122.53763 * 2 1 4 4 C 1.33393 * 114.91898 * 180.26918 * 3 2 1 5 5 S 1.75879 * 109.59659 * 359.77496 * 4 3 2 6 6 C 1.33394 * 122.54205 * 179.83178 * 2 1 3 7 7 C 1.50696 * 125.19855 * 0.02562 * 6 2 1 8 8 C 1.52998 * 109.46969 * 89.72360 * 7 6 2 9 9 N 1.46506 * 109.47237 * 179.97438 * 8 7 6 10 10 C 1.34773 * 119.99969 * 179.72043 * 9 8 7 11 11 O 1.21689 * 120.00158 * 0.02562 * 10 9 8 12 12 C 1.46376 * 120.00038 * 179.97438 * 10 9 8 13 13 H 1.08004 * 119.99999 * 0.02562 * 12 10 9 14 14 C 1.40047 * 120.00289 * 180.02562 * 12 10 9 15 15 N 1.30676 * 119.99832 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99995 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47213 * 90.00335 * 16 14 12 18 18 H 1.48504 * 109.47159 * 209.99994 * 16 14 12 19 19 H 1.48489 * 109.47333 * 330.00237 * 16 14 12 20 20 H 1.08999 * 109.47481 * 270.16690 * 1 2 3 21 21 H 1.08991 * 109.47307 * 30.17173 * 1 2 3 22 22 H 1.08999 * 109.47086 * 150.16994 * 1 2 3 23 23 H 1.07999 * 122.54310 * 0.04658 * 3 2 1 24 24 H 1.08008 * 125.20185 * 179.74626 * 4 3 2 25 25 H 1.09000 * 109.47664 * 329.72288 * 7 6 2 26 26 H 1.09002 * 109.46824 * 209.71759 * 7 6 2 27 27 H 1.09001 * 109.47671 * 59.99812 * 8 7 6 28 28 H 1.08998 * 109.47454 * 299.99809 * 8 7 6 29 29 H 0.97005 * 119.99811 * 0.02562 * 9 8 7 30 30 H 0.97000 * 119.99487 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2515 1.1669 0.0000 4 6 3.5736 0.9901 -0.0057 5 16 3.9386 -0.7304 -0.0050 6 6 2.2245 -1.1245 0.0033 7 6 1.6537 -2.5192 0.0068 8 6 1.4546 -2.9924 -1.4344 9 7 0.9002 -4.3485 -1.4311 10 6 0.6350 -4.9710 -2.5966 11 8 0.8565 -4.4068 -3.6519 12 6 0.0817 -6.3261 -2.5933 13 1 -0.1145 -6.8270 -1.6567 14 6 -0.1934 -6.9732 -3.8044 15 7 0.0444 -6.3674 -4.9376 16 14 -0.9003 -8.7023 -3.8001 17 1 -2.3835 -8.6307 -3.7877 18 1 -0.4497 -9.4243 -5.0170 19 1 -0.4296 -9.4264 -2.5922 20 1 -0.3634 0.0030 1.0276 21 1 -0.3633 0.8884 -0.5164 22 1 -0.3633 -0.8915 -0.5112 23 1 1.7964 2.1464 0.0007 24 1 4.3077 1.7823 -0.0105 25 1 0.6945 -2.5179 0.5246 26 1 2.3419 -3.1921 0.5184 27 1 2.4138 -2.9937 -1.9523 28 1 0.7665 -2.3195 -1.9461 29 1 0.7199 -4.7966 -0.5898 30 1 -0.1458 -6.8158 -5.7765 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258656450.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:45 Heat of formation + Delta-G solvation = -46.760559 kcal Electronic energy + Delta-G solvation = -14198.042765 eV Core-core repulsion = 11697.306410 eV Total energy + Delta-G solvation = -2500.736355 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.77422 -39.11359 -35.94837 -34.56883 -32.90244 -30.79046 -28.74446 -27.07809 -24.29963 -23.04310 -21.75492 -19.47461 -19.09239 -18.05648 -17.36544 -16.44176 -16.25244 -15.89972 -15.72952 -14.83136 -14.48405 -14.31463 -13.71931 -13.65974 -13.20620 -13.12185 -12.99025 -12.74090 -12.68369 -12.55277 -12.51414 -12.08958 -12.00664 -11.56997 -10.93082 -9.91468 -9.53288 -9.50160 -9.24447 -8.29316 -6.86397 0.06697 0.73124 1.11541 1.41255 1.43026 1.58562 1.78133 2.25587 2.46810 3.08406 3.60827 3.96919 4.04432 4.11031 4.13726 4.46870 4.49328 4.62103 4.76496 4.83306 4.95886 4.98516 5.16005 5.18440 5.32079 5.55098 5.65965 5.86852 6.20859 6.25525 6.86350 7.54437 8.48344 8.67059 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.051137 B = 0.004609 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.419245 B = 6073.705102 C = 6192.984223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.110 4.110 3 C -0.139 4.139 4 C -0.209 4.209 5 S 0.072 5.928 6 C -0.194 4.194 7 C -0.042 4.042 8 C 0.147 3.853 9 N -0.754 5.754 10 C 0.535 3.465 11 O -0.635 6.635 12 C -0.573 4.573 13 H 0.091 0.909 14 C 0.027 3.973 15 N -0.824 5.824 16 Si 1.001 2.999 17 H -0.260 1.260 18 H -0.274 1.274 19 H -0.248 1.248 20 H 0.086 0.914 21 H 0.078 0.922 22 H 0.053 0.947 23 H 0.163 0.837 24 H 0.190 0.810 25 H 0.101 0.899 26 H 0.086 0.914 27 H 0.024 0.976 28 H 0.031 0.969 29 H 0.398 0.602 30 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.893 10.811 13.478 17.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.123 4.123 3 C -0.169 4.169 4 C -0.344 4.344 5 S 0.337 5.663 6 C -0.311 4.311 7 C -0.081 4.081 8 C 0.022 3.978 9 N -0.410 5.410 10 C 0.339 3.661 11 O -0.522 6.522 12 C -0.609 4.609 13 H 0.109 0.891 14 C -0.188 4.188 15 N -0.453 5.453 16 Si 0.820 3.180 17 H -0.185 1.185 18 H -0.199 1.199 19 H -0.171 1.171 20 H 0.104 0.896 21 H 0.097 0.903 22 H 0.072 0.928 23 H 0.181 0.819 24 H 0.207 0.793 25 H 0.119 0.881 26 H 0.105 0.895 27 H 0.042 0.958 28 H 0.050 0.950 29 H 0.232 0.768 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.454 10.413 12.540 16.898 hybrid contribution -1.354 0.107 -0.124 1.364 sum 3.100 10.520 12.417 16.567 Atomic orbital electron populations 1.20582 0.88874 1.02928 1.03141 1.19227 0.98425 0.91836 1.02796 1.20316 0.92980 0.99796 1.03792 1.25897 1.00331 0.98429 1.09718 1.84343 1.06079 1.02298 1.73614 1.24193 0.96119 0.98816 1.11998 1.20149 1.02333 0.90530 0.95092 1.20808 0.96397 0.84333 0.96273 1.45794 1.70244 1.16169 1.08751 1.18688 0.77967 0.87423 0.82023 1.90555 1.59476 1.69251 1.32958 1.21454 1.45431 0.99237 0.94804 0.89114 1.27027 0.93343 1.04350 0.94061 1.70205 1.36862 1.39189 0.99089 0.84976 0.78821 0.75119 0.79089 1.18502 1.19888 1.17072 0.89564 0.90277 0.92784 0.81923 0.79295 0.88053 0.89549 0.95785 0.95033 0.76802 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.08 9.60 71.23 0.68 -1.40 16 2 C -0.11 -2.75 5.80 -20.92 -0.12 -2.87 16 3 C -0.14 -2.92 9.98 21.22 0.21 -2.71 16 4 C -0.21 -4.27 11.23 66.72 0.75 -3.52 16 5 S 0.07 1.80 23.33 -56.49 -1.32 0.49 16 6 C -0.19 -5.37 5.76 24.59 0.14 -5.23 16 7 C -0.04 -1.21 5.18 29.85 0.15 -1.06 16 8 C 0.15 5.99 5.66 86.38 0.49 6.48 16 9 N -0.75 -34.64 5.55 -467.40 -2.59 -37.23 16 10 C 0.53 31.85 7.75 86.36 0.67 32.52 16 11 O -0.63 -44.02 15.02 -4.31 -0.06 -44.09 16 12 C -0.57 -32.81 9.54 24.83 0.24 -32.57 16 13 H 0.09 4.60 7.85 -2.91 -0.02 4.58 16 14 C 0.03 1.52 5.50 85.30 0.47 1.99 16 15 N -0.82 -51.32 11.83 21.84 0.26 -51.06 16 16 Si 1.00 41.07 29.56 68.60 2.03 43.10 16 17 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 18 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 19 H -0.25 -9.37 7.11 99.48 0.71 -8.66 16 20 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 21 H 0.08 1.47 8.13 -2.39 -0.02 1.45 16 22 H 0.05 1.37 6.95 -2.39 -0.02 1.36 16 23 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 24 H 0.19 2.67 8.06 -2.91 -0.02 2.65 16 25 H 0.10 2.58 7.33 -2.39 -0.02 2.57 16 26 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.03 1.40 7.83 -2.39 -0.02 1.38 16 29 H 0.40 15.25 8.45 -92.70 -0.78 14.47 16 30 H 0.27 15.44 8.29 -92.71 -0.77 14.67 16 Total: -1.00 -77.33 277.98 2.36 -74.97 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 0.37 Total: 22.19 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: 3.68 Total: -8.37 kcal Atomic # 7 Polarization: -85.96 SS G_CDS: -2.34 Total: -88.29 kcal Atomic # 8 Polarization: -44.02 SS G_CDS: -0.06 Total: -44.09 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -1.32 Total: 0.49 kcal Total: -77.33 2.36 -74.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258656450.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.212 kcal (2) G-P(sol) polarization free energy of solvation -77.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds