Wall clock time and date at job start Sun Mar 29 2020 22:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35963 * 116.99418 * 2 1 4 4 C 1.38524 * 120.07591 * 359.71838 * 3 2 1 5 5 C 1.38241 * 120.04715 * 180.26005 * 4 3 2 6 6 C 1.38621 * 120.20114 * 0.04107 * 5 4 3 7 7 F 1.35106 * 119.92560 * 179.97438 * 6 5 4 8 8 C 1.38259 * 120.14375 * 359.95683 * 6 5 4 9 9 C 1.38927 * 119.95221 * 0.02613 * 8 6 5 10 10 N 1.39533 * 120.10163 * 179.97438 * 9 8 6 11 11 C 1.34779 * 120.00034 * 24.84844 * 10 9 8 12 12 O 1.21770 * 119.99929 * 5.52476 * 11 10 9 13 13 C 1.41793 * 120.00070 * 185.53200 * 11 10 9 14 14 H 1.07995 * 119.99856 * 5.01420 * 13 11 10 15 15 C 1.40138 * 119.99698 * 185.02082 * 13 11 10 16 16 N 1.30632 * 120.00400 * 354.97309 * 15 13 11 17 17 Si 1.86805 * 119.99829 * 174.97680 * 15 13 11 18 18 H 1.48500 * 109.47319 * 94.99640 * 17 15 13 19 19 H 1.48505 * 109.46892 * 214.99771 * 17 15 13 20 20 H 1.48500 * 109.47018 * 334.99753 * 17 15 13 21 21 H 1.09004 * 109.46514 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47355 * 300.00281 * 1 2 3 23 23 H 1.09000 * 109.47046 * 60.00468 * 1 2 3 24 24 H 1.07994 * 119.97873 * 0.25519 * 4 3 2 25 25 H 1.08001 * 119.89912 * 180.02562 * 5 4 3 26 26 H 1.08002 * 120.02585 * 180.02562 * 8 6 5 27 27 H 0.97002 * 120.00500 * 204.84949 * 10 9 8 28 28 H 0.96992 * 119.99902 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2932 2.3742 -0.0059 5 6 1.9213 3.6056 -0.0113 6 6 3.3054 3.6825 -0.0118 7 9 3.9134 4.8890 -0.0176 8 6 4.0649 2.5272 -0.0058 9 6 3.4401 1.2864 0.0000 10 7 4.2035 0.1184 0.0054 11 6 5.4588 0.1362 0.4958 12 8 5.8914 1.1438 1.0253 13 6 6.2757 -1.0184 0.3949 14 1 5.9226 -1.8842 -0.1455 15 6 7.5413 -1.0359 0.9966 16 7 8.0091 0.0429 1.5656 17 14 8.5593 -2.6021 0.9849 18 1 9.4978 -2.5740 -0.1657 19 1 9.3303 -2.7008 2.2502 20 1 7.6592 -3.7767 0.8608 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 0.2147 2.3186 -0.0063 25 1 1.3318 4.5106 -0.0155 26 1 5.1431 2.5893 -0.0058 27 1 3.8309 -0.7063 -0.3437 28 1 8.8851 0.0307 1.9816 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258725184.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:54 Heat of formation + Delta-G solvation = -115.361145 kcal Electronic energy + Delta-G solvation = -16586.055929 eV Core-core repulsion = 13516.131653 eV Total energy + Delta-G solvation = -3069.924276 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.79350 -41.38626 -39.64175 -37.81766 -35.38835 -34.51387 -31.27366 -30.44684 -28.57370 -27.81493 -24.24783 -23.13907 -21.87325 -19.75438 -18.94195 -18.45699 -17.90372 -17.23706 -16.76287 -16.50320 -16.30246 -15.85531 -15.56841 -15.23889 -14.76465 -14.52004 -13.83546 -13.70573 -13.33720 -13.21815 -12.83493 -12.79792 -12.65781 -12.03764 -12.01806 -11.79010 -11.22865 -10.90350 -9.91996 -9.44166 -8.54829 -8.41686 -7.04720 0.26281 0.30027 1.38889 1.39604 1.57263 2.19397 2.28914 2.36467 2.68770 2.82977 3.42858 3.60654 3.84611 4.05729 4.30036 4.45465 4.51578 4.53146 4.81763 4.90034 5.04444 5.17916 5.19732 5.28028 5.77405 5.85013 6.09208 6.11308 6.55325 6.70377 7.32599 8.32775 8.52039 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.027678 B = 0.007318 C = 0.005878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.405676 B = 3825.073545 C = 4762.136014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.334 6.334 3 C 0.065 3.935 4 C -0.143 4.143 5 C -0.144 4.144 6 C 0.066 3.934 7 F -0.152 7.152 8 C -0.177 4.177 9 C 0.162 3.838 10 N -0.683 5.683 11 C 0.526 3.474 12 O -0.611 6.611 13 C -0.563 4.563 14 H 0.092 0.908 15 C 0.032 3.968 16 N -0.800 5.800 17 Si 1.004 2.996 18 H -0.260 1.260 19 H -0.270 1.270 20 H -0.246 1.246 21 H 0.117 0.883 22 H 0.066 0.934 23 H 0.073 0.927 24 H 0.182 0.818 25 H 0.169 0.831 26 H 0.121 0.879 27 H 0.409 0.591 28 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.539 -0.977 -3.929 15.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.248 6.248 3 C 0.017 3.983 4 C -0.161 4.161 5 C -0.164 4.164 6 C 0.046 3.954 7 F -0.131 7.131 8 C -0.199 4.199 9 C 0.063 3.937 10 N -0.325 5.325 11 C 0.336 3.664 12 O -0.499 6.499 13 C -0.598 4.598 14 H 0.110 0.890 15 C -0.187 4.187 16 N -0.428 5.428 17 Si 0.822 3.178 18 H -0.185 1.185 19 H -0.195 1.195 20 H -0.169 1.169 21 H 0.135 0.865 22 H 0.085 0.915 23 H 0.092 0.908 24 H 0.199 0.801 25 H 0.187 0.813 26 H 0.139 0.861 27 H 0.244 0.756 28 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.925 -0.411 -3.468 14.357 hybrid contribution 0.701 -0.380 -0.002 0.798 sum -13.224 -0.792 -3.470 13.695 Atomic orbital electron populations 1.23404 0.75918 1.05676 1.02637 1.86022 1.23861 1.25619 1.89310 1.18801 0.89374 0.86559 1.03568 1.21183 1.01504 0.89326 1.04129 1.21068 0.90694 1.00217 1.04429 1.17652 0.91929 0.79234 1.06588 1.91416 1.84337 1.42849 1.94484 1.21156 1.01452 0.90972 1.06360 1.17296 0.88401 0.87608 1.00433 1.43605 1.15319 1.09758 1.63855 1.17493 0.80236 0.89895 0.78787 1.90572 1.73584 1.36095 1.49666 1.20593 1.01619 1.01152 1.36403 0.89022 1.27068 0.98603 1.01249 0.91745 1.70161 1.16928 1.30609 1.25119 0.84913 0.77632 0.76473 0.78743 1.18476 1.19470 1.16921 0.86458 0.91502 0.90831 0.80061 0.81321 0.86079 0.75578 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.41 15 2 O -0.33 -9.92 9.91 -93.14 -0.92 -10.84 15 3 C 0.07 2.24 6.71 22.66 0.15 2.39 15 4 C -0.14 -3.78 9.03 22.34 0.20 -3.58 15 5 C -0.14 -4.20 10.02 22.36 0.22 -3.97 15 6 C 0.07 2.60 7.29 22.37 0.16 2.76 15 7 F -0.15 -6.08 17.26 44.97 0.78 -5.30 15 8 C -0.18 -8.47 8.69 22.44 0.19 -8.28 15 9 C 0.16 7.28 6.44 38.41 0.25 7.53 15 10 N -0.68 -33.29 5.26 -311.06 -1.64 -34.92 15 11 C 0.53 31.09 7.37 85.12 0.63 31.71 15 12 O -0.61 -40.97 12.05 -4.57 -0.06 -41.02 15 13 C -0.56 -31.71 9.31 23.61 0.22 -31.49 15 14 H 0.09 4.60 7.85 -2.91 -0.02 4.57 15 15 C 0.03 1.74 5.49 85.33 0.47 2.20 15 16 N -0.80 -48.12 11.75 21.85 0.26 -47.86 15 17 Si 1.00 39.80 29.56 68.60 2.03 41.82 15 18 H -0.26 -9.82 7.11 99.48 0.71 -9.12 15 19 H -0.27 -10.31 7.11 99.48 0.71 -9.60 15 20 H -0.25 -9.04 7.11 99.48 0.71 -8.33 15 21 H 0.12 1.47 8.14 -2.38 -0.02 1.45 15 22 H 0.07 0.94 7.67 -2.39 -0.02 0.93 15 23 H 0.07 0.93 7.65 -2.39 -0.02 0.92 15 24 H 0.18 2.96 6.29 -2.91 -0.02 2.95 15 25 H 0.17 3.53 8.06 -2.91 -0.02 3.50 15 26 H 0.12 6.97 5.78 -2.91 -0.02 6.96 15 27 H 0.41 17.46 8.30 -92.71 -0.77 16.69 15 28 H 0.28 15.13 8.29 -92.71 -0.77 14.36 15 Total: -1.00 -76.67 255.33 4.51 -72.16 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: 0.45 Total: 25.27 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: 3.61 Total: 0.70 kcal Atomic # 7 Polarization: -81.41 SS G_CDS: -1.38 Total: -82.79 kcal Atomic # 8 Polarization: -50.89 SS G_CDS: -0.98 Total: -51.87 kcal Atomic # 9 Polarization: -6.08 SS G_CDS: 0.78 Total: -5.30 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.82 kcal Total: -76.67 4.51 -72.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258725184.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.200 kcal (2) G-P(sol) polarization free energy of solvation -76.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds