Wall clock time and date at job start Sun Mar 29 2020 22:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37178 * 119.99674 * 2 1 4 4 H 1.08007 * 119.99674 * 204.09166 * 3 2 1 5 5 C 1.38885 * 120.00382 * 24.09514 * 3 2 1 6 6 N 1.31466 * 119.99890 * 10.72562 * 5 3 2 7 7 Si 1.86800 * 120.00251 * 190.72610 * 5 3 2 8 8 H 1.48497 * 109.47300 * 359.97438 * 7 5 3 9 9 H 1.48508 * 109.47151 * 119.99976 * 7 5 3 10 10 H 1.48499 * 109.47236 * 239.99785 * 7 5 3 11 11 C 1.34779 * 120.00306 * 179.97438 * 2 1 3 12 12 O 1.21517 * 119.99992 * 179.97438 * 11 2 1 13 13 O 1.34684 * 119.99793 * 0.02562 * 11 2 1 14 14 C 1.35960 * 117.00227 * 175.09999 * 13 11 2 15 15 C 1.38714 * 120.03007 * 256.91295 * 14 13 11 16 16 C 1.38147 * 119.96821 * 179.76849 * 15 14 13 17 17 C 1.38457 * 120.03191 * 0.49959 * 16 15 14 18 18 F 1.35100 * 119.97323 * 179.72744 * 17 16 15 19 19 C 1.38462 * 120.05912 * 359.74711 * 17 16 15 20 20 C 1.38146 * 120.02901 * 0.02562 * 19 17 16 21 21 H 1.08998 * 109.47125 * 274.55219 * 1 2 3 22 22 H 1.08998 * 109.47154 * 34.55621 * 1 2 3 23 23 H 1.08996 * 109.47035 * 154.55880 * 1 2 3 24 24 H 0.97003 * 120.00295 * 180.02562 * 6 5 3 25 25 H 1.07999 * 120.01342 * 0.02562 * 15 14 13 26 26 H 1.07994 * 119.97838 * 180.25184 * 16 15 14 27 27 H 1.08001 * 119.98731 * 179.97438 * 19 17 16 28 28 H 1.08006 * 120.01116 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1508 1.1880 0.0000 4 1 3.1603 1.2288 -0.3818 5 6 1.5471 2.3384 0.4910 6 7 0.4098 2.2560 1.1452 7 14 2.3512 4.0029 0.2219 8 1 3.6153 3.8252 -0.5368 9 1 1.4308 4.8788 -0.5468 10 1 2.6471 4.6280 1.5361 11 6 2.1389 -1.1672 0.0005 12 8 3.3541 -1.1671 0.0001 13 8 1.4655 -2.3336 0.0005 14 6 2.2022 -3.4717 -0.1024 15 6 2.2646 -4.1514 -1.3100 16 6 3.0174 -5.3050 -1.4144 17 6 3.7010 -5.7886 -0.3118 18 9 4.4324 -6.9199 -0.4138 19 6 3.6355 -5.1139 0.8956 20 6 2.8873 -3.9574 1.0016 21 1 -0.3633 0.0816 1.0244 22 1 -0.3633 0.8463 -0.5829 23 1 -0.3633 -0.9280 -0.4415 24 1 -0.0121 3.0594 1.4879 25 1 1.7283 -3.7766 -2.1692 26 1 3.0693 -5.8321 -2.3556 27 1 4.1689 -5.4923 1.7551 28 1 2.8360 -3.4316 1.9436 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259164358.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:37 Heat of formation + Delta-G solvation = -77.164453 kcal Electronic energy + Delta-G solvation = -16451.394181 eV Core-core repulsion = 13383.126238 eV Total energy + Delta-G solvation = -3068.267943 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.81886 -40.35727 -38.19306 -36.18558 -34.62859 -31.71281 -31.09629 -29.31773 -26.39847 -24.86999 -23.06580 -22.59880 -20.44234 -17.67924 -17.45217 -17.09937 -16.70811 -16.47628 -15.49919 -15.05292 -14.58088 -14.38382 -13.87117 -13.49604 -13.31468 -13.01158 -12.65113 -12.21335 -11.73732 -11.50239 -11.31690 -11.18526 -10.96893 -10.45993 -10.37569 -10.12932 -9.35647 -9.15263 -9.03406 -8.31437 -7.86524 -6.40374 -4.03609 1.12586 1.31178 3.08732 3.13017 3.22451 3.33103 3.83819 3.93278 4.23388 4.33026 4.83593 4.88661 5.05272 5.19801 5.37008 5.46132 5.87569 5.95370 6.16191 6.23251 6.43622 6.54046 6.75407 6.85201 7.20766 7.41839 7.49976 8.02960 8.30984 9.02623 9.22753 9.86798 10.63157 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.055909 B = 0.005382 C = 0.005208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.694218 B = 5201.216896 C = 5374.595807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.422 5.422 3 C -0.302 4.302 4 H 0.103 0.897 5 C 0.032 3.968 6 N -0.879 5.879 7 Si 0.935 3.065 8 H -0.267 1.267 9 H -0.279 1.279 10 H -0.280 1.280 11 C 0.579 3.421 12 O -0.595 6.595 13 O -0.320 6.320 14 C 0.123 3.877 15 C -0.100 4.100 16 C -0.141 4.141 17 C 0.083 3.917 18 F -0.143 7.143 19 C -0.140 4.140 20 C -0.091 4.091 21 H 0.063 0.937 22 H 0.067 0.933 23 H 0.035 0.965 24 H 0.269 0.731 25 H 0.138 0.862 26 H 0.138 0.862 27 H 0.138 0.862 28 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.176 -10.355 -2.408 10.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.147 5.147 3 C -0.428 4.428 4 H 0.120 0.880 5 C -0.172 4.172 6 N -0.518 5.518 7 Si 0.761 3.239 8 H -0.191 1.191 9 H -0.205 1.205 10 H -0.206 1.206 11 C 0.334 3.666 12 O -0.487 6.487 13 O -0.234 6.234 14 C 0.079 3.921 15 C -0.118 4.118 16 C -0.160 4.160 17 C 0.064 3.936 18 F -0.122 7.122 19 C -0.158 4.158 20 C -0.110 4.110 21 H 0.081 0.919 22 H 0.085 0.915 23 H 0.053 0.947 24 H 0.079 0.921 25 H 0.156 0.844 26 H 0.156 0.844 27 H 0.156 0.844 28 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.407 -10.264 -2.308 10.528 hybrid contribution 0.354 0.675 0.037 0.763 sum 0.762 -9.589 -2.271 9.883 Atomic orbital electron populations 1.21516 0.79736 0.98912 1.02492 1.42542 1.05995 1.00987 1.65222 1.19708 1.01058 0.82069 1.40010 0.87971 1.25433 0.96622 1.00260 0.94871 1.70042 1.17622 1.29713 1.34395 0.85720 0.79225 0.80670 0.78240 1.19080 1.20469 1.20559 1.18582 0.84462 0.80112 0.83422 1.90840 1.12096 1.85585 1.60187 1.84287 1.38906 1.12719 1.87471 1.18347 0.94282 0.86509 0.92935 1.21090 0.98549 0.95366 0.96830 1.20899 0.99047 0.97771 0.98290 1.17655 0.95642 0.85033 0.95251 1.91472 1.75426 1.48466 1.96852 1.20948 1.01608 0.96296 0.96993 1.21269 0.94854 0.95321 0.99511 0.91860 0.91456 0.94669 0.92058 0.84380 0.84384 0.84430 0.84441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.69 8.74 59.85 0.52 3.21 15 2 N -0.42 -11.07 3.02 -127.66 -0.39 -11.45 15 3 C -0.30 -8.33 9.26 -14.92 -0.14 -8.47 15 4 H 0.10 2.92 7.43 -52.48 -0.39 2.53 15 5 C 0.03 0.83 5.14 -17.47 -0.09 0.74 15 6 N -0.88 -23.06 10.66 55.49 0.59 -22.47 15 7 Si 0.94 20.29 29.57 -169.99 -5.03 15.26 15 8 H -0.27 -5.77 7.11 56.52 0.40 -5.37 15 9 H -0.28 -5.88 7.11 56.52 0.40 -5.48 15 10 H -0.28 -6.04 7.11 56.52 0.40 -5.64 15 11 C 0.58 14.79 8.23 54.06 0.44 15.23 15 12 O -0.59 -16.63 15.59 -19.28 -0.30 -16.93 15 13 O -0.32 -6.94 8.78 -24.83 -0.22 -7.16 15 14 C 0.12 2.30 5.14 -39.23 -0.20 2.09 15 15 C -0.10 -1.56 9.99 -39.44 -0.39 -1.95 15 16 C -0.14 -1.93 10.02 -39.53 -0.40 -2.32 15 17 C 0.08 1.19 7.30 -39.42 -0.29 0.90 15 18 F -0.14 -1.97 17.27 2.25 0.04 -1.94 15 19 C -0.14 -2.01 10.02 -39.53 -0.40 -2.41 15 20 C -0.09 -1.54 9.58 -39.44 -0.38 -1.92 15 21 H 0.06 1.51 7.36 -51.93 -0.38 1.13 15 22 H 0.07 1.57 7.32 -51.93 -0.38 1.19 15 23 H 0.03 0.71 7.23 -51.93 -0.38 0.33 15 24 H 0.27 6.62 8.31 -40.82 -0.34 6.28 15 25 H 0.14 1.92 8.06 -52.49 -0.42 1.50 15 26 H 0.14 1.47 8.06 -52.49 -0.42 1.05 15 27 H 0.14 1.61 8.06 -52.49 -0.42 1.19 15 28 H 0.14 2.29 8.06 -52.48 -0.42 1.87 15 LS Contribution 259.50 15.07 3.91 3.91 Total: -1.00 -30.04 259.50 -5.06 -35.10 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -2.35 Total: 0.57 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -1.31 Total: 5.11 kcal Atomic # 7 Polarization: -34.13 SS G_CDS: 0.21 Total: -33.92 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.52 Total: -24.09 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.03 Total: 15.26 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.04 -5.06 -35.10 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259164358.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.065 kcal (2) G-P(sol) polarization free energy of solvation -30.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds