Wall clock time and date at job start Sun Mar 29 2020 22:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37178 * 119.99674 * 2 1 4 4 H 1.08007 * 119.99674 * 204.09166 * 3 2 1 5 5 C 1.38885 * 120.00382 * 24.09514 * 3 2 1 6 6 N 1.31466 * 119.99890 * 10.72562 * 5 3 2 7 7 Si 1.86800 * 120.00251 * 190.72610 * 5 3 2 8 8 H 1.48497 * 109.47300 * 359.97438 * 7 5 3 9 9 H 1.48508 * 109.47151 * 119.99976 * 7 5 3 10 10 H 1.48499 * 109.47236 * 239.99785 * 7 5 3 11 11 C 1.34779 * 120.00306 * 179.97438 * 2 1 3 12 12 O 1.21517 * 119.99992 * 179.97438 * 11 2 1 13 13 O 1.34684 * 119.99793 * 0.02562 * 11 2 1 14 14 C 1.35960 * 117.00227 * 175.09999 * 13 11 2 15 15 C 1.38714 * 120.03007 * 256.91295 * 14 13 11 16 16 C 1.38147 * 119.96821 * 179.76849 * 15 14 13 17 17 C 1.38457 * 120.03191 * 0.49959 * 16 15 14 18 18 F 1.35100 * 119.97323 * 179.72744 * 17 16 15 19 19 C 1.38462 * 120.05912 * 359.74711 * 17 16 15 20 20 C 1.38146 * 120.02901 * 0.02562 * 19 17 16 21 21 H 1.08998 * 109.47125 * 274.55219 * 1 2 3 22 22 H 1.08998 * 109.47154 * 34.55621 * 1 2 3 23 23 H 1.08996 * 109.47035 * 154.55880 * 1 2 3 24 24 H 0.97003 * 120.00295 * 180.02562 * 6 5 3 25 25 H 1.07999 * 120.01342 * 0.02562 * 15 14 13 26 26 H 1.07994 * 119.97838 * 180.25184 * 16 15 14 27 27 H 1.08001 * 119.98731 * 179.97438 * 19 17 16 28 28 H 1.08006 * 120.01116 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1508 1.1880 0.0000 4 1 3.1603 1.2288 -0.3818 5 6 1.5471 2.3384 0.4910 6 7 0.4098 2.2560 1.1452 7 14 2.3512 4.0029 0.2219 8 1 3.6153 3.8252 -0.5368 9 1 1.4308 4.8788 -0.5468 10 1 2.6471 4.6280 1.5361 11 6 2.1389 -1.1672 0.0005 12 8 3.3541 -1.1671 0.0001 13 8 1.4655 -2.3336 0.0005 14 6 2.2022 -3.4717 -0.1024 15 6 2.2646 -4.1514 -1.3100 16 6 3.0174 -5.3050 -1.4144 17 6 3.7010 -5.7886 -0.3118 18 9 4.4324 -6.9199 -0.4138 19 6 3.6355 -5.1139 0.8956 20 6 2.8873 -3.9574 1.0016 21 1 -0.3633 0.0816 1.0244 22 1 -0.3633 0.8463 -0.5829 23 1 -0.3633 -0.9280 -0.4415 24 1 -0.0121 3.0594 1.4879 25 1 1.7283 -3.7766 -2.1692 26 1 3.0693 -5.8321 -2.3556 27 1 4.1689 -5.4923 1.7551 28 1 2.8360 -3.4316 1.9436 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259164358.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:37 Heat of formation + Delta-G solvation = -94.544630 kcal Electronic energy + Delta-G solvation = -16452.147842 eV Core-core repulsion = 13383.126238 eV Total energy + Delta-G solvation = -3069.021604 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.95299 -42.01781 -39.71969 -37.87068 -36.62080 -33.71582 -32.29140 -30.64890 -28.34599 -26.76807 -24.31889 -24.08162 -22.05223 -19.38068 -19.07893 -18.74010 -18.34144 -17.99137 -16.87751 -16.61480 -16.29211 -15.84747 -15.41143 -14.81226 -14.73809 -14.63356 -14.02873 -13.90180 -13.37749 -13.17661 -13.07588 -12.71636 -12.65971 -12.41519 -12.08637 -11.68402 -11.33980 -11.11010 -10.22293 -9.87772 -9.62369 -8.38515 -6.11461 -0.18347 0.12799 1.38201 1.40704 1.53469 1.70575 1.96235 2.33889 2.61625 3.03508 3.15162 3.52185 3.68216 3.80722 4.11888 4.27248 4.43472 4.68972 4.81526 4.95266 4.98013 5.00192 5.27369 5.30516 5.37921 5.48935 5.90355 6.02701 6.32681 7.02649 7.23606 7.90635 8.64480 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.055909 B = 0.005382 C = 0.005208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.694218 B = 5201.216896 C = 5374.595807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.128 3.872 2 N -0.437 5.437 3 C -0.340 4.340 4 H 0.081 0.919 5 C 0.000 4.000 6 N -0.895 5.895 7 Si 1.003 2.997 8 H -0.270 1.270 9 H -0.263 1.263 10 H -0.274 1.274 11 C 0.578 3.422 12 O -0.628 6.628 13 O -0.315 6.315 14 C 0.073 3.927 15 C -0.099 4.099 16 C -0.130 4.130 17 C 0.089 3.911 18 F -0.136 7.136 19 C -0.135 4.135 20 C -0.104 4.104 21 H 0.050 0.950 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.277 0.723 25 H 0.153 0.847 26 H 0.175 0.825 27 H 0.165 0.835 28 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.357 -11.030 -3.041 11.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.014 4.014 2 N -0.163 5.163 3 C -0.466 4.466 4 H 0.099 0.901 5 C -0.202 4.202 6 N -0.533 5.533 7 Si 0.825 3.175 8 H -0.194 1.194 9 H -0.188 1.188 10 H -0.199 1.199 11 C 0.334 3.666 12 O -0.523 6.523 13 O -0.228 6.228 14 C 0.031 3.969 15 C -0.117 4.117 16 C -0.148 4.148 17 C 0.070 3.930 18 F -0.115 7.115 19 C -0.154 4.154 20 C -0.123 4.123 21 H 0.069 0.931 22 H 0.079 0.921 23 H 0.080 0.920 24 H 0.087 0.913 25 H 0.171 0.829 26 H 0.192 0.808 27 H 0.182 0.818 28 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.550 -10.972 -2.937 11.371 hybrid contribution 0.321 0.711 0.245 0.818 sum 0.872 -10.260 -2.692 10.643 Atomic orbital electron populations 1.21435 0.78258 0.99990 1.01762 1.42750 1.07031 1.01117 1.65366 1.19722 1.00991 0.83610 1.42306 0.90066 1.26262 0.97008 1.03154 0.93805 1.70114 1.18193 1.31081 1.33896 0.84748 0.78320 0.76111 0.78345 1.19434 1.18758 1.19920 1.18682 0.84168 0.81094 0.82683 1.90784 1.13597 1.86503 1.61445 1.84283 1.38760 1.12484 1.87225 1.18863 0.96887 0.86100 0.95071 1.21285 0.98619 0.95698 0.96107 1.21241 0.97265 0.96747 0.99573 1.17777 0.95047 0.84873 0.95292 1.91500 1.75158 1.47996 1.96802 1.21171 1.00708 0.95199 0.98290 1.21312 0.95563 0.96448 0.98963 0.93122 0.92087 0.92004 0.91310 0.82890 0.80778 0.81761 0.85235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.96 8.74 127.77 1.12 7.08 15 2 N -0.44 -23.45 3.02 -788.17 -2.38 -25.83 15 3 C -0.34 -19.22 9.26 84.01 0.78 -18.45 15 4 H 0.08 4.82 7.43 -2.91 -0.02 4.80 15 5 C 0.00 0.01 5.14 84.90 0.44 0.44 15 6 N -0.90 -46.84 10.66 21.65 0.23 -46.61 15 7 Si 1.00 41.30 29.57 68.60 2.03 43.33 15 8 H -0.27 -11.18 7.11 99.48 0.71 -10.48 15 9 H -0.26 -10.12 7.11 99.48 0.71 -9.41 15 10 H -0.27 -10.98 7.11 99.48 0.71 -10.28 15 11 C 0.58 30.28 8.23 129.79 1.07 31.35 15 12 O -0.63 -36.24 15.59 19.79 0.31 -35.93 15 13 O -0.31 -13.86 8.78 -0.06 0.00 -13.86 15 14 C 0.07 2.74 5.14 22.50 0.12 2.86 15 15 C -0.10 -2.94 9.99 22.36 0.22 -2.72 15 16 C -0.13 -3.16 10.02 22.30 0.22 -2.93 15 17 C 0.09 2.30 7.30 22.38 0.16 2.46 15 18 F -0.14 -3.29 17.27 44.97 0.78 -2.52 15 19 C -0.14 -3.66 10.02 22.30 0.22 -3.43 15 20 C -0.10 -3.52 9.58 22.36 0.21 -3.31 15 21 H 0.05 2.45 7.36 -2.39 -0.02 2.43 15 22 H 0.06 2.86 7.32 -2.39 -0.02 2.84 15 23 H 0.06 2.48 7.23 -2.39 -0.02 2.46 15 24 H 0.28 13.41 8.31 -92.71 -0.77 12.63 15 25 H 0.15 4.00 8.06 -2.91 -0.02 3.98 15 26 H 0.17 2.96 8.06 -2.91 -0.02 2.93 15 27 H 0.16 3.46 8.06 -2.91 -0.02 3.44 15 28 H 0.13 4.46 8.06 -2.91 -0.02 4.44 15 Total: -1.00 -64.99 259.50 6.71 -58.28 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 1.18 Total: 9.79 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: 4.56 Total: 13.35 kcal Atomic # 7 Polarization: -70.29 SS G_CDS: -2.15 Total: -72.44 kcal Atomic # 8 Polarization: -50.10 SS G_CDS: 0.31 Total: -49.79 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.78 Total: -2.52 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -64.99 6.71 -58.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259164358.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.267 kcal (2) G-P(sol) polarization free energy of solvation -64.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds