Wall clock time and date at job start Sun Mar 29 2020 22:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37089 * 120.00195 * 2 1 4 4 H 1.08001 * 119.99878 * 204.39023 * 3 2 1 5 5 C 1.38946 * 120.00524 * 24.38716 * 3 2 1 6 6 N 1.31412 * 119.99922 * 12.64615 * 5 3 2 7 7 Si 1.86801 * 120.00176 * 192.64393 * 5 3 2 8 8 H 1.48495 * 109.47051 * 60.00302 * 7 5 3 9 9 H 1.48509 * 109.47025 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46952 * 299.99882 * 7 5 3 11 11 C 1.34781 * 119.99545 * 179.97438 * 2 1 3 12 12 O 1.21289 * 119.99812 * 180.02562 * 11 2 1 13 13 C 1.50696 * 120.00133 * 0.02562 * 11 2 1 14 14 C 1.53001 * 109.47270 * 180.02562 * 13 11 2 15 15 C 1.50697 * 109.46946 * 180.02562 * 14 13 11 16 16 C 1.33390 * 125.20525 * 90.00027 * 15 14 13 17 17 C 1.38433 * 114.91929 * 179.97438 * 16 15 14 18 18 C 1.33393 * 114.91944 * 359.97438 * 17 16 15 19 19 S 1.75884 * 109.59496 * 359.75825 * 18 17 16 20 20 H 1.09000 * 109.47904 * 265.87289 * 1 2 3 21 21 H 1.09006 * 109.46343 * 25.87226 * 1 2 3 22 22 H 1.08998 * 109.47113 * 145.86041 * 1 2 3 23 23 H 0.96998 * 120.00154 * 180.02562 * 6 5 3 24 24 H 1.09001 * 109.47141 * 60.00005 * 13 11 2 25 25 H 1.09000 * 109.47319 * 300.00484 * 13 11 2 26 26 H 1.08995 * 109.46750 * 60.00000 * 14 13 11 27 27 H 1.09005 * 109.46707 * 299.99890 * 14 13 11 28 28 H 1.07994 * 122.54297 * 359.95216 * 16 15 14 29 29 H 1.07991 * 122.53926 * 180.02562 * 17 16 15 30 30 H 1.07996 * 125.20126 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1582 1.2289 -0.3862 5 6 1.5489 2.3369 0.4968 6 7 0.4347 2.2493 1.1880 7 14 2.3240 4.0072 0.1824 8 1 2.4043 4.2480 -1.2807 9 1 1.4935 5.0648 0.8127 10 1 3.6897 4.0366 0.7647 11 6 2.1388 -1.1673 0.0005 12 8 3.3517 -1.1673 0.0010 13 6 1.3853 -2.4723 0.0005 14 6 2.3794 -3.6353 0.0018 15 6 1.6258 -4.9403 0.0012 16 6 1.2424 -5.6064 -1.0891 17 6 0.5615 -6.7862 -0.8424 18 6 0.3924 -7.0783 0.4481 19 16 1.1248 -5.8225 1.4380 20 1 -0.3635 -0.0740 1.0250 21 1 -0.3632 0.9248 -0.4485 22 1 -0.3633 -0.8506 -0.5767 23 1 0.0144 3.0519 1.5345 24 1 0.7590 -2.5302 -0.8897 25 1 0.7582 -2.5298 0.8902 26 1 3.0053 -3.5772 0.8922 27 1 3.0068 -3.5780 -0.8878 28 1 1.4474 -5.2521 -2.0884 29 1 0.1957 -7.4222 -1.6348 30 1 -0.1129 -7.9543 0.8270 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259356899.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:34 Heat of formation + Delta-G solvation = -3.938866 kcal Electronic energy + Delta-G solvation = -14406.283632 eV Core-core repulsion = 11907.404165 eV Total energy + Delta-G solvation = -2498.879467 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.60906 -37.68485 -34.76397 -33.12974 -31.55522 -28.59950 -26.30013 -25.14305 -23.82460 -22.14135 -19.13765 -18.67391 -17.10430 -16.78705 -15.78953 -15.35570 -14.77055 -14.49522 -14.11109 -13.27528 -13.16330 -12.73965 -12.41086 -12.16792 -11.88093 -11.58549 -11.35476 -11.26307 -11.19173 -10.81467 -10.76089 -10.44459 -10.38123 -10.19399 -8.98210 -8.62747 -8.41095 -8.28019 -7.63315 -6.29951 -3.86329 1.08973 1.72719 2.10594 2.82254 3.20497 3.25726 3.29833 3.93150 4.16246 4.77973 5.07090 5.13977 5.17375 5.44828 5.58652 5.64919 5.66375 5.95755 6.08743 6.13301 6.32085 6.42764 6.45470 6.50859 6.65435 6.87699 7.21598 7.58657 8.16987 8.51436 9.21351 9.45557 10.01845 10.75097 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.057145 B = 0.004882 C = 0.004775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.861596 B = 5733.654707 C = 5862.369471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.447 5.447 3 C -0.307 4.307 4 H 0.097 0.903 5 C 0.030 3.970 6 N -0.883 5.883 7 Si 0.926 3.074 8 H -0.274 1.274 9 H -0.284 1.284 10 H -0.273 1.273 11 C 0.446 3.554 12 O -0.592 6.592 13 C -0.122 4.122 14 C -0.033 4.033 15 C -0.152 4.152 16 C -0.153 4.153 17 C -0.130 4.130 18 C -0.228 4.228 19 S 0.091 5.909 20 H 0.051 0.949 21 H 0.073 0.927 22 H 0.026 0.974 23 H 0.268 0.732 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.139 0.861 29 H 0.136 0.864 30 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.682 -13.757 -2.071 14.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.166 5.166 3 C -0.435 4.435 4 H 0.115 0.885 5 C -0.173 4.173 6 N -0.523 5.523 7 Si 0.753 3.247 8 H -0.199 1.199 9 H -0.210 1.210 10 H -0.198 1.198 11 C 0.234 3.766 12 O -0.477 6.477 13 C -0.163 4.163 14 C -0.073 4.073 15 C -0.270 4.270 16 C -0.183 4.183 17 C -0.161 4.161 18 C -0.363 4.363 19 S 0.354 5.646 20 H 0.070 0.930 21 H 0.092 0.908 22 H 0.044 0.956 23 H 0.078 0.922 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.106 0.894 28 H 0.157 0.843 29 H 0.153 0.847 30 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -3.108 -13.372 -0.416 13.735 hybrid contribution -0.191 0.577 -1.518 1.636 sum -3.299 -12.795 -1.935 13.354 Atomic orbital electron populations 1.21475 0.81281 0.99869 1.00582 1.43579 1.05456 1.04800 1.62751 1.19600 1.00588 0.84268 1.39088 0.88545 1.25342 0.96640 1.00116 0.95168 1.69987 1.19253 1.29683 1.33351 0.86002 0.79049 0.80982 0.78673 1.19943 1.20965 1.19791 1.20059 0.88040 0.84894 0.83559 1.90506 1.14022 1.87256 1.55963 1.21530 0.98509 0.93238 1.03073 1.19906 0.96091 0.86686 1.04574 1.24776 1.05354 1.01661 0.95181 1.20146 1.02599 0.96022 0.99500 1.20145 1.01602 0.98026 0.96292 1.25544 1.09490 1.04319 0.96996 1.84367 1.54013 1.15879 1.10307 0.93032 0.90783 0.95559 0.92234 0.90314 0.90291 0.90166 0.89378 0.84320 0.84659 0.82310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.53 8.44 59.85 0.51 3.03 16 2 N -0.45 -11.64 3.01 -122.19 -0.37 -12.01 16 3 C -0.31 -8.70 9.24 -14.94 -0.14 -8.84 16 4 H 0.10 2.84 7.45 -52.49 -0.39 2.45 16 5 C 0.03 0.81 5.04 -17.47 -0.09 0.72 16 6 N -0.88 -23.86 10.83 55.50 0.60 -23.26 16 7 Si 0.93 20.94 29.57 -169.99 -5.03 15.91 16 8 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 11 C 0.45 10.95 7.63 -10.99 -0.08 10.86 16 12 O -0.59 -16.43 15.70 5.55 0.09 -16.35 16 13 C -0.12 -2.27 4.29 -27.88 -0.12 -2.39 16 14 C -0.03 -0.55 5.00 -27.88 -0.14 -0.69 16 15 C -0.15 -2.19 5.76 -36.00 -0.21 -2.39 16 16 C -0.15 -1.97 10.05 -41.20 -0.41 -2.38 16 17 C -0.13 -1.46 10.18 -41.20 -0.42 -1.88 16 18 C -0.23 -2.53 11.23 29.04 0.33 -2.20 16 19 S 0.09 1.18 23.33 -107.50 -2.51 -1.33 16 20 H 0.05 1.19 7.83 -51.93 -0.41 0.79 16 21 H 0.07 1.76 6.80 -51.93 -0.35 1.41 16 22 H 0.03 0.49 6.61 -51.93 -0.34 0.15 16 23 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 24 H 0.08 1.32 7.41 -51.93 -0.38 0.94 16 25 H 0.08 1.41 8.11 -51.93 -0.42 0.99 16 26 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 27 H 0.09 1.49 8.10 -51.93 -0.42 1.07 16 28 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 29 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 30 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 273.50 15.07 4.12 4.12 Total: -1.00 -30.83 273.50 -7.41 -38.25 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -3.54 Total: 0.83 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -0.78 Total: -6.16 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: 0.23 Total: -35.27 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: 0.09 Total: -16.35 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.51 Total: -1.33 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.83 -7.41 -38.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259356899.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.310 kcal (2) G-P(sol) polarization free energy of solvation -30.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds