Wall clock time and date at job start Sun Mar 29 2020 22:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37089 * 120.00195 * 2 1 4 4 H 1.08001 * 119.99878 * 204.39023 * 3 2 1 5 5 C 1.38946 * 120.00524 * 24.38716 * 3 2 1 6 6 N 1.31412 * 119.99922 * 12.64615 * 5 3 2 7 7 Si 1.86801 * 120.00176 * 192.64393 * 5 3 2 8 8 H 1.48495 * 109.47051 * 60.00302 * 7 5 3 9 9 H 1.48509 * 109.47025 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46952 * 299.99882 * 7 5 3 11 11 C 1.34781 * 119.99545 * 179.97438 * 2 1 3 12 12 O 1.21289 * 119.99812 * 180.02562 * 11 2 1 13 13 C 1.50696 * 120.00133 * 0.02562 * 11 2 1 14 14 C 1.53001 * 109.47270 * 180.02562 * 13 11 2 15 15 C 1.50697 * 109.46946 * 180.02562 * 14 13 11 16 16 C 1.33390 * 125.20525 * 90.00027 * 15 14 13 17 17 C 1.38433 * 114.91929 * 179.97438 * 16 15 14 18 18 C 1.33393 * 114.91944 * 359.97438 * 17 16 15 19 19 S 1.75884 * 109.59496 * 359.75825 * 18 17 16 20 20 H 1.09000 * 109.47904 * 265.87289 * 1 2 3 21 21 H 1.09006 * 109.46343 * 25.87226 * 1 2 3 22 22 H 1.08998 * 109.47113 * 145.86041 * 1 2 3 23 23 H 0.96998 * 120.00154 * 180.02562 * 6 5 3 24 24 H 1.09001 * 109.47141 * 60.00005 * 13 11 2 25 25 H 1.09000 * 109.47319 * 300.00484 * 13 11 2 26 26 H 1.08995 * 109.46750 * 60.00000 * 14 13 11 27 27 H 1.09005 * 109.46707 * 299.99890 * 14 13 11 28 28 H 1.07994 * 122.54297 * 359.95216 * 16 15 14 29 29 H 1.07991 * 122.53926 * 180.02562 * 17 16 15 30 30 H 1.07996 * 125.20126 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1582 1.2289 -0.3862 5 6 1.5489 2.3369 0.4968 6 7 0.4347 2.2493 1.1880 7 14 2.3240 4.0072 0.1824 8 1 2.4043 4.2480 -1.2807 9 1 1.4935 5.0648 0.8127 10 1 3.6897 4.0366 0.7647 11 6 2.1388 -1.1673 0.0005 12 8 3.3517 -1.1673 0.0010 13 6 1.3853 -2.4723 0.0005 14 6 2.3794 -3.6353 0.0018 15 6 1.6258 -4.9403 0.0012 16 6 1.2424 -5.6064 -1.0891 17 6 0.5615 -6.7862 -0.8424 18 6 0.3924 -7.0783 0.4481 19 16 1.1248 -5.8225 1.4380 20 1 -0.3635 -0.0740 1.0250 21 1 -0.3632 0.9248 -0.4485 22 1 -0.3633 -0.8506 -0.5767 23 1 0.0144 3.0519 1.5345 24 1 0.7590 -2.5302 -0.8897 25 1 0.7582 -2.5298 0.8902 26 1 3.0053 -3.5772 0.8922 27 1 3.0068 -3.5780 -0.8878 28 1 1.4474 -5.2521 -2.0884 29 1 0.1957 -7.4222 -1.6348 30 1 -0.1129 -7.9543 0.8270 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259356899.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:34 Heat of formation + Delta-G solvation = -22.054108 kcal Electronic energy + Delta-G solvation = -14407.069168 eV Core-core repulsion = 11907.404165 eV Total energy + Delta-G solvation = -2499.665003 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.45404 -38.74917 -36.73548 -34.55323 -33.56566 -29.88115 -28.14620 -26.75366 -25.34632 -23.36626 -20.55184 -20.05940 -18.89894 -18.31108 -17.39836 -16.76182 -16.33473 -16.12074 -15.93792 -14.79873 -14.63047 -13.94942 -13.68730 -13.61573 -13.31843 -13.18322 -13.00911 -12.89121 -12.80138 -12.61144 -12.30878 -12.13237 -11.91756 -11.54915 -11.00384 -10.39476 -9.67534 -9.51102 -9.36999 -8.34445 -5.99992 0.12714 0.75445 1.17203 1.39237 1.40803 1.51638 1.89677 2.02610 2.28576 3.07368 3.09347 3.80447 4.09435 4.15709 4.28834 4.34375 4.53942 4.67053 4.76559 4.79138 4.93112 5.03959 5.13606 5.29932 5.35547 5.43848 5.45953 5.65945 6.10215 6.48148 7.16165 7.46856 8.02995 8.68702 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.057145 B = 0.004882 C = 0.004775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.861596 B = 5733.654707 C = 5862.369471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.465 5.465 3 C -0.348 4.348 4 H 0.071 0.929 5 C -0.002 4.002 6 N -0.898 5.898 7 Si 0.990 3.010 8 H -0.266 1.266 9 H -0.269 1.269 10 H -0.277 1.277 11 C 0.435 3.565 12 O -0.634 6.634 13 C -0.107 4.107 14 C -0.022 4.022 15 C -0.182 4.182 16 C -0.143 4.143 17 C -0.138 4.138 18 C -0.211 4.211 19 S 0.071 5.929 20 H 0.042 0.958 21 H 0.057 0.943 22 H 0.067 0.933 23 H 0.274 0.726 24 H 0.103 0.897 25 H 0.089 0.911 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.150 0.850 29 H 0.166 0.834 30 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.131 -14.922 -2.673 16.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.183 5.183 3 C -0.476 4.476 4 H 0.089 0.911 5 C -0.204 4.204 6 N -0.536 5.536 7 Si 0.813 3.187 8 H -0.191 1.191 9 H -0.194 1.194 10 H -0.203 1.203 11 C 0.225 3.775 12 O -0.522 6.522 13 C -0.147 4.147 14 C -0.062 4.062 15 C -0.299 4.299 16 C -0.173 4.173 17 C -0.168 4.168 18 C -0.347 4.347 19 S 0.334 5.666 20 H 0.060 0.940 21 H 0.076 0.924 22 H 0.086 0.914 23 H 0.083 0.917 24 H 0.121 0.879 25 H 0.107 0.893 26 H 0.078 0.922 27 H 0.097 0.903 28 H 0.167 0.833 29 H 0.183 0.817 30 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -4.591 -14.547 -1.015 15.288 hybrid contribution 0.241 0.853 -1.322 1.592 sum -4.350 -13.694 -2.337 14.557 Atomic orbital electron populations 1.21435 0.79403 1.00820 1.00548 1.43878 1.06774 1.04761 1.62916 1.19592 1.00461 0.86275 1.41248 0.91141 1.26106 0.97031 1.03014 0.94257 1.70058 1.19746 1.30871 1.32945 0.85056 0.77972 0.76741 0.78921 1.19087 1.19388 1.20267 1.21099 0.87979 0.86449 0.81932 1.90466 1.16156 1.88156 1.57449 1.21447 0.98480 0.90292 1.04520 1.19646 0.95607 0.87653 1.03257 1.24467 1.07529 1.01473 0.96473 1.20445 1.01217 0.96122 0.99528 1.20434 1.01375 0.97757 0.97224 1.25943 1.08094 1.04096 0.96528 1.84444 1.54642 1.16975 1.10554 0.93953 0.92396 0.91420 0.91665 0.87892 0.89306 0.92151 0.90251 0.83279 0.81693 0.79372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.41 8.44 127.77 1.08 6.49 16 2 N -0.46 -24.58 3.01 -658.89 -1.98 -26.57 16 3 C -0.35 -20.21 9.24 84.04 0.78 -19.44 16 4 H 0.07 4.36 7.45 -2.91 -0.02 4.33 16 5 C 0.00 -0.13 5.04 84.93 0.43 0.30 16 6 N -0.90 -48.38 10.83 21.66 0.23 -48.15 16 7 Si 0.99 42.97 29.57 68.60 2.03 45.00 16 8 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 9 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 10 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 11 C 0.44 21.77 7.63 87.66 0.67 22.44 16 12 O -0.63 -36.58 15.70 -3.06 -0.05 -36.63 16 13 C -0.11 -3.89 4.29 29.85 0.13 -3.77 16 14 C -0.02 -0.73 5.00 29.85 0.15 -0.59 16 15 C -0.18 -5.00 5.76 24.59 0.14 -4.86 16 16 C -0.14 -3.31 10.05 21.22 0.21 -3.10 16 17 C -0.14 -2.61 10.18 21.22 0.22 -2.39 16 18 C -0.21 -3.96 11.23 66.72 0.75 -3.21 16 19 S 0.07 1.72 23.33 -56.49 -1.32 0.40 16 20 H 0.04 1.94 7.83 -2.39 -0.02 1.92 16 21 H 0.06 2.74 6.80 -2.38 -0.02 2.73 16 22 H 0.07 2.41 6.61 -2.39 -0.02 2.39 16 23 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 24 H 0.10 3.24 7.41 -2.39 -0.02 3.23 16 25 H 0.09 3.08 8.11 -2.39 -0.02 3.06 16 26 H 0.06 2.21 8.10 -2.39 -0.02 2.19 16 27 H 0.08 2.73 8.10 -2.38 -0.02 2.71 16 28 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 29 H 0.17 2.14 8.06 -2.92 -0.02 2.12 16 30 H 0.19 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -67.74 273.50 4.60 -63.15 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: 1.13 Total: 10.92 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: 4.55 Total: -8.13 kcal Atomic # 7 Polarization: -72.97 SS G_CDS: -1.75 Total: -74.72 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -0.05 Total: -36.63 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -1.32 Total: 0.40 kcal Total: -67.74 4.60 -63.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259356899.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.094 kcal (2) G-P(sol) polarization free energy of solvation -67.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds