Wall clock time and date at job start Sun Mar 29 2020 22:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 120.00079 * 2 1 4 4 H 1.48504 * 109.47016 * 270.00366 * 3 2 1 5 5 H 1.48502 * 109.47003 * 29.99770 * 3 2 1 6 6 H 1.48497 * 109.46990 * 149.99983 * 3 2 1 7 7 C 1.37879 * 119.99627 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00177 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99602 * 180.02562 * 7 2 1 10 10 N 1.46496 * 109.46871 * 180.02562 * 9 7 2 11 11 C 1.34784 * 119.99741 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00093 * 359.97438 * 11 10 9 13 13 C 1.50696 * 119.99865 * 179.97438 * 11 10 9 14 14 C 1.53000 * 109.47110 * 179.97438 * 13 11 10 15 15 C 1.50706 * 109.47116 * 179.97438 * 14 13 11 16 16 C 1.33391 * 125.19937 * 90.00083 * 15 14 13 17 17 C 1.38423 * 114.92045 * 179.97438 * 16 15 14 18 18 C 1.33390 * 114.91979 * 359.97438 * 17 16 15 19 19 S 1.75878 * 125.20693 * 269.69344 * 15 14 13 20 20 H 0.96998 * 120.00010 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47308 * 59.99631 * 9 7 2 22 22 H 1.09000 * 109.46976 * 299.99776 * 9 7 2 23 23 H 0.96998 * 120.00681 * 359.97438 * 10 9 7 24 24 H 1.09000 * 109.47543 * 59.99570 * 13 11 10 25 25 H 1.09008 * 109.47338 * 300.00084 * 13 11 10 26 26 H 1.09000 * 109.46884 * 60.00335 * 14 13 11 27 27 H 1.09000 * 109.46955 * 299.99651 * 14 13 11 28 28 H 1.07995 * 122.54106 * 359.95411 * 16 15 14 29 29 H 1.08001 * 122.53959 * 180.02562 * 17 16 15 30 30 H 1.07998 * 125.20163 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5753 -0.0013 11 6 5.3250 -2.8216 -0.0005 12 8 6.1131 -1.8998 0.0008 13 6 5.8273 -4.2424 -0.0014 14 6 7.3573 -4.2424 -0.0009 15 6 7.8596 -5.6633 -0.0011 16 6 8.1162 -6.3879 -1.0912 17 6 8.5707 -7.6719 -0.8443 18 6 8.6836 -7.9898 0.4462 19 16 8.2044 -6.6170 1.4359 20 1 -0.4850 0.8400 0.0004 21 1 3.8746 -0.6808 0.8905 22 1 3.8752 -0.6797 -0.8895 23 1 3.3696 -3.3126 -0.0020 24 1 5.4645 -4.7555 -0.8920 25 1 5.4632 -4.7570 0.8880 26 1 7.7203 -3.7292 0.8896 27 1 7.7208 -3.7280 -0.8904 28 1 7.9795 -6.0023 -2.0906 29 1 8.8160 -8.3637 -1.6366 30 1 9.0214 -8.9429 0.8254 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259360599.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:53 Heat of formation + Delta-G solvation = -20.456102 kcal Electronic energy + Delta-G solvation = -13880.775304 eV Core-core repulsion = 11381.179596 eV Total energy + Delta-G solvation = -2499.595708 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.13332 -37.94842 -34.41544 -33.54647 -32.34842 -29.25952 -27.68214 -24.99224 -22.83364 -21.62910 -19.80895 -19.34515 -17.52748 -16.93804 -15.94803 -15.60119 -15.24123 -15.15016 -14.15952 -13.66044 -13.35784 -13.08266 -12.80716 -12.54018 -12.40260 -12.09342 -11.87460 -11.84994 -11.06871 -11.00730 -10.78035 -10.72924 -9.98045 -9.50815 -9.29713 -8.78713 -8.73061 -8.60924 -8.16388 -6.22251 -4.24610 0.86475 1.50807 1.88510 2.61056 3.21060 3.26745 3.32947 3.41335 3.96818 4.32774 4.75925 4.91314 5.04112 5.11802 5.13816 5.32455 5.43007 5.56126 5.72144 5.79833 6.04979 6.10934 6.18079 6.38636 6.79880 7.06172 7.21206 7.38494 8.12062 8.50651 8.74065 8.91720 9.37863 10.89722 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.060555 B = 0.004006 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.274793 B = 6987.387769 C = 7114.807826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.080 0.920 9 C 0.219 3.781 10 N -0.706 5.706 11 C 0.499 3.501 12 O -0.561 6.561 13 C -0.135 4.135 14 C -0.034 4.034 15 C -0.162 4.162 16 C -0.146 4.146 17 C -0.132 4.132 18 C -0.223 4.223 19 S 0.094 5.906 20 H 0.268 0.732 21 H 0.025 0.975 22 H 0.020 0.980 23 H 0.397 0.603 24 H 0.093 0.907 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.140 0.860 29 H 0.138 0.862 30 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.484 -15.022 0.100 21.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.127 4.127 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.582 4.582 8 H 0.098 0.902 9 C 0.097 3.903 10 N -0.354 5.354 11 C 0.285 3.715 12 O -0.441 6.441 13 C -0.176 4.176 14 C -0.074 4.074 15 C -0.280 4.280 16 C -0.176 4.176 17 C -0.162 4.162 18 C -0.358 4.358 19 S 0.357 5.643 20 H 0.077 0.923 21 H 0.043 0.957 22 H 0.038 0.962 23 H 0.231 0.769 24 H 0.111 0.889 25 H 0.109 0.891 26 H 0.101 0.899 27 H 0.109 0.891 28 H 0.158 0.842 29 H 0.155 0.845 30 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 15.770 -13.973 1.663 21.136 hybrid contribution 0.023 0.113 -1.539 1.544 sum 15.793 -13.861 0.124 21.013 Atomic orbital electron populations 1.69884 1.06218 1.27438 1.49433 1.24807 0.94799 0.99201 0.93856 0.86806 0.80564 0.83203 0.79052 1.19840 1.20885 1.18515 1.21103 0.88545 0.95239 1.53323 0.90246 1.19497 0.95251 0.78782 0.96771 1.46207 1.05800 1.11060 1.72309 1.20509 0.83158 0.90775 0.77098 1.90651 1.55556 1.46540 1.51321 1.21670 0.95914 0.95475 1.04566 1.19892 0.93873 0.88721 1.04909 1.24644 1.07040 1.00832 0.95455 1.20172 1.03668 0.94235 0.99516 1.20173 1.02657 0.97017 0.96378 1.25588 1.10362 1.02906 0.96948 1.84374 1.64537 1.05345 1.10029 0.92252 0.95706 0.96162 0.76927 0.88876 0.89093 0.89936 0.89086 0.84209 0.84469 0.82142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.53 13.96 55.43 0.77 -25.75 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 7 C -0.54 -14.96 9.83 -34.44 -0.34 -15.30 16 8 H 0.08 2.27 7.84 -52.49 -0.41 1.85 16 9 C 0.22 5.40 4.50 -5.19 -0.02 5.38 16 10 N -0.71 -14.19 5.55 -61.47 -0.34 -14.53 16 11 C 0.50 9.27 7.83 -10.98 -0.09 9.19 16 12 O -0.56 -12.47 15.98 5.56 0.09 -12.39 16 13 C -0.14 -1.79 5.68 -27.89 -0.16 -1.94 16 14 C -0.03 -0.43 5.00 -27.88 -0.14 -0.57 16 15 C -0.16 -1.83 5.76 -36.00 -0.21 -2.04 16 16 C -0.15 -1.51 10.05 -41.21 -0.41 -1.92 16 17 C -0.13 -1.21 10.18 -41.21 -0.42 -1.63 16 18 C -0.22 -2.01 11.23 29.04 0.33 -1.68 16 19 S 0.09 0.97 23.33 -107.50 -2.51 -1.54 16 20 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 21 H 0.03 0.65 7.20 -51.93 -0.37 0.27 16 22 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 23 H 0.40 7.01 8.32 -40.82 -0.34 6.67 16 24 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.09 1.07 8.14 -51.92 -0.42 0.65 16 26 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 27 H 0.09 1.18 8.10 -51.93 -0.42 0.76 16 28 H 0.14 1.27 8.06 -52.49 -0.42 0.84 16 29 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 30 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 278.46 15.07 4.20 4.20 Total: -1.00 -31.73 278.46 -7.66 -39.38 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -3.64 Total: 2.26 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -1.56 Total: -8.43 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: 0.43 Total: -40.29 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.09 Total: -12.39 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -2.51 Total: -1.54 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -31.73 -7.66 -39.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259360599.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.927 kcal (2) G-P(sol) polarization free energy of solvation -31.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds