Wall clock time and date at job start Sun Mar 29 2020 22:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 120.00079 * 2 1 4 4 H 1.48504 * 109.47016 * 270.00366 * 3 2 1 5 5 H 1.48502 * 109.47003 * 29.99770 * 3 2 1 6 6 H 1.48497 * 109.46990 * 149.99983 * 3 2 1 7 7 C 1.37879 * 119.99627 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00177 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99602 * 180.02562 * 7 2 1 10 10 N 1.46496 * 109.46871 * 180.02562 * 9 7 2 11 11 C 1.34784 * 119.99741 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00093 * 359.97438 * 11 10 9 13 13 C 1.50696 * 119.99865 * 179.97438 * 11 10 9 14 14 C 1.53000 * 109.47110 * 179.97438 * 13 11 10 15 15 C 1.50706 * 109.47116 * 179.97438 * 14 13 11 16 16 C 1.33391 * 125.19937 * 90.00083 * 15 14 13 17 17 C 1.38423 * 114.92045 * 179.97438 * 16 15 14 18 18 C 1.33390 * 114.91979 * 359.97438 * 17 16 15 19 19 S 1.75878 * 125.20693 * 269.69344 * 15 14 13 20 20 H 0.96998 * 120.00010 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47308 * 59.99631 * 9 7 2 22 22 H 1.09000 * 109.46976 * 299.99776 * 9 7 2 23 23 H 0.96998 * 120.00681 * 359.97438 * 10 9 7 24 24 H 1.09000 * 109.47543 * 59.99570 * 13 11 10 25 25 H 1.09008 * 109.47338 * 300.00084 * 13 11 10 26 26 H 1.09000 * 109.46884 * 60.00335 * 14 13 11 27 27 H 1.09000 * 109.46955 * 299.99651 * 14 13 11 28 28 H 1.07995 * 122.54106 * 359.95411 * 16 15 14 29 29 H 1.08001 * 122.53959 * 180.02562 * 17 16 15 30 30 H 1.07998 * 125.20163 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5753 -0.0013 11 6 5.3250 -2.8216 -0.0005 12 8 6.1131 -1.8998 0.0008 13 6 5.8273 -4.2424 -0.0014 14 6 7.3573 -4.2424 -0.0009 15 6 7.8596 -5.6633 -0.0011 16 6 8.1162 -6.3879 -1.0912 17 6 8.5707 -7.6719 -0.8443 18 6 8.6836 -7.9898 0.4462 19 16 8.2044 -6.6170 1.4359 20 1 -0.4850 0.8400 0.0004 21 1 3.8746 -0.6808 0.8905 22 1 3.8752 -0.6797 -0.8895 23 1 3.3696 -3.3126 -0.0020 24 1 5.4645 -4.7555 -0.8920 25 1 5.4632 -4.7570 0.8880 26 1 7.7203 -3.7292 0.8896 27 1 7.7208 -3.7280 -0.8904 28 1 7.9795 -6.0023 -2.0906 29 1 8.8160 -8.3637 -1.6366 30 1 9.0214 -8.9429 0.8254 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259360599.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:53 Heat of formation + Delta-G solvation = -41.455813 kcal Electronic energy + Delta-G solvation = -13881.685920 eV Core-core repulsion = 11381.179596 eV Total energy + Delta-G solvation = -2500.506324 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.64716 -38.76584 -36.21899 -34.63899 -34.37779 -30.63518 -29.16850 -26.07543 -24.16839 -23.09600 -21.38875 -20.09188 -19.17851 -18.16360 -17.44695 -16.97645 -16.70012 -16.21657 -15.97079 -15.01937 -14.86620 -14.36668 -14.08539 -13.99740 -13.58191 -13.24981 -13.02758 -12.92112 -12.81043 -12.68827 -11.97795 -11.93843 -11.66536 -11.56451 -10.92574 -10.86333 -9.93396 -9.53574 -9.37139 -8.40637 -6.47810 0.10794 0.74774 1.14966 1.32487 1.34753 1.47287 1.72248 1.87685 2.27642 2.49752 2.94701 3.71510 3.99106 4.10240 4.26360 4.32989 4.57115 4.69156 4.75423 4.81535 4.90999 5.02826 5.09610 5.25827 5.28680 5.43849 5.52288 5.64145 6.07872 6.53397 6.83665 7.14867 7.40347 8.74144 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.060555 B = 0.004006 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.274793 B = 6987.387769 C = 7114.807826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.026 3.974 3 Si 0.939 3.061 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.230 3.770 10 N -0.707 5.707 11 C 0.499 3.501 12 O -0.598 6.598 13 C -0.121 4.121 14 C -0.028 4.028 15 C -0.183 4.183 16 C -0.143 4.143 17 C -0.141 4.141 18 C -0.214 4.214 19 S 0.077 5.923 20 H 0.272 0.728 21 H 0.012 0.988 22 H 0.012 0.988 23 H 0.409 0.591 24 H 0.118 0.882 25 H 0.110 0.890 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.150 0.850 29 H 0.161 0.839 30 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.775 -16.259 -0.265 23.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.175 4.175 3 Si 0.762 3.238 4 H -0.189 1.189 5 H -0.198 1.198 6 H -0.185 1.185 7 C -0.586 4.586 8 H 0.077 0.923 9 C 0.106 3.894 10 N -0.357 5.357 11 C 0.287 3.713 12 O -0.480 6.480 13 C -0.161 4.161 14 C -0.067 4.067 15 C -0.300 4.300 16 C -0.173 4.173 17 C -0.171 4.171 18 C -0.349 4.349 19 S 0.340 5.660 20 H 0.082 0.918 21 H 0.030 0.970 22 H 0.030 0.970 23 H 0.245 0.755 24 H 0.136 0.864 25 H 0.128 0.872 26 H 0.087 0.913 27 H 0.102 0.898 28 H 0.168 0.832 29 H 0.179 0.821 30 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 17.062 -15.246 1.298 22.918 hybrid contribution -0.359 0.383 -1.432 1.526 sum 16.703 -14.862 -0.135 22.358 Atomic orbital electron populations 1.69985 1.07702 1.28638 1.50690 1.25622 0.95557 1.02735 0.93567 0.85841 0.79209 0.79260 0.79480 1.18923 1.19789 1.18522 1.21311 0.90012 0.94601 1.52651 0.92265 1.19103 0.93345 0.81297 0.95654 1.46086 1.06985 1.09667 1.72919 1.21404 0.81950 0.92696 0.75221 1.90632 1.56276 1.48412 1.52710 1.21646 0.96312 0.91526 1.06588 1.19731 0.93284 0.89778 1.03949 1.24463 1.08997 1.00302 0.96259 1.20443 1.02492 0.94623 0.99740 1.20447 1.02525 0.96963 0.97161 1.25941 1.09214 1.03134 0.96655 1.84434 1.64986 1.06244 1.10297 0.91830 0.97015 0.97022 0.75490 0.86431 0.87186 0.91323 0.89819 0.83191 0.82106 0.79737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.76 13.96 21.45 0.30 -55.46 16 2 C 0.03 1.45 5.47 84.65 0.46 1.91 16 3 Si 0.94 44.19 27.47 68.60 1.88 46.08 16 4 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.26 -12.20 6.54 99.48 0.65 -11.55 16 7 C -0.55 -30.36 9.83 25.60 0.25 -30.11 16 8 H 0.06 3.44 7.84 -2.91 -0.02 3.42 16 9 C 0.23 11.32 4.50 85.63 0.38 11.70 16 10 N -0.71 -28.03 5.55 -466.79 -2.59 -30.62 16 11 C 0.50 18.12 7.83 87.65 0.69 18.80 16 12 O -0.60 -26.51 15.98 -3.03 -0.05 -26.56 16 13 C -0.12 -2.96 5.68 29.85 0.17 -2.79 16 14 C -0.03 -0.67 5.00 29.85 0.15 -0.52 16 15 C -0.18 -3.81 5.76 24.59 0.14 -3.67 16 16 C -0.14 -2.59 10.05 21.22 0.21 -2.38 16 17 C -0.14 -2.16 10.18 21.22 0.22 -1.95 16 18 C -0.21 -3.25 11.23 66.72 0.75 -2.50 16 19 S 0.08 1.46 23.33 -56.49 -1.32 0.14 16 20 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 21 H 0.01 0.62 7.20 -2.39 -0.02 0.60 16 22 H 0.01 0.60 7.57 -2.39 -0.02 0.59 16 23 H 0.41 14.12 8.32 -92.71 -0.77 13.34 16 24 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 25 H 0.11 2.34 8.14 -2.38 -0.02 2.32 16 26 H 0.07 1.83 8.10 -2.39 -0.02 1.81 16 27 H 0.08 2.11 8.10 -2.39 -0.02 2.09 16 28 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 29 H 0.16 1.67 8.06 -2.91 -0.02 1.64 16 30 H 0.19 1.82 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -67.68 278.46 1.97 -65.71 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 0.32 Total: 12.22 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: 3.42 Total: -11.51 kcal Atomic # 7 Polarization: -83.79 SS G_CDS: -2.29 Total: -86.08 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.05 Total: -26.56 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.88 Total: 46.08 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -1.32 Total: 0.14 kcal Total: -67.68 1.97 -65.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259360599.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.255 kcal (2) G-P(sol) polarization free energy of solvation -67.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds