Wall clock time and date at job start Sun Mar 29 2020 22:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33809 * 122.45139 * 2 1 4 4 S 1.70620 * 110.95609 * 179.74453 * 3 2 1 5 5 C 1.75836 * 91.56043 * 0.35489 * 4 3 2 6 6 C 1.46576 * 125.45536 * 179.91568 * 5 4 3 7 7 O 1.21707 * 120.00199 * 179.69321 * 6 5 4 8 8 N 1.34784 * 120.00539 * 359.69227 * 6 5 4 9 9 C 1.46497 * 120.00075 * 180.02562 * 8 6 5 10 10 H 1.08996 * 109.47049 * 324.99133 * 9 8 6 11 11 C 1.52997 * 109.47188 * 85.00024 * 9 8 6 12 12 C 1.50706 * 109.46582 * 204.99875 * 9 8 6 13 13 H 1.07999 * 120.00196 * 359.97438 * 12 9 8 14 14 C 1.37879 * 119.99394 * 179.97438 * 12 9 8 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47363 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47233 * 120.00158 * 16 14 12 19 19 H 1.48508 * 109.46883 * 239.99963 * 16 14 12 20 20 C 1.36649 * 109.08362 * 359.64850 * 5 4 3 21 21 H 1.08996 * 109.46958 * 269.98365 * 1 2 3 22 22 H 1.09004 * 109.46711 * 29.98068 * 1 2 3 23 23 H 1.08999 * 109.46795 * 149.97678 * 1 2 3 24 24 H 1.08005 * 124.52373 * 0.05189 * 3 2 1 25 25 H 0.96996 * 119.99132 * 359.97438 * 8 6 5 26 26 H 1.09002 * 109.47153 * 299.99573 * 11 9 8 27 27 H 1.09001 * 109.46832 * 179.97438 * 11 9 8 28 28 H 1.09004 * 109.47261 * 59.99745 * 11 9 8 29 29 H 0.96996 * 119.99730 * 179.97438 * 15 14 12 30 30 H 1.08000 * 123.35026 * 180.28891 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2251 1.1291 0.0000 4 16 3.8970 0.7891 0.0071 5 6 3.5937 -0.9429 -0.0008 6 6 4.6231 -1.9863 -0.0012 7 8 4.3001 -3.1598 -0.0013 8 7 5.9274 -1.6465 -0.0015 9 6 6.9561 -2.6894 -0.0026 10 1 6.6122 -3.5395 0.5866 11 6 7.2242 -3.1400 -1.4399 12 6 8.2259 -2.1430 0.5978 13 1 8.2629 -1.1210 0.9448 14 6 9.3402 -2.9480 0.7038 15 7 9.2953 -4.1924 0.2807 16 14 10.9139 -2.2709 1.4485 17 1 10.7054 -0.8546 1.8432 18 1 11.2789 -3.0703 2.6456 19 1 12.0087 -2.3495 0.4482 20 6 2.2446 -1.1602 -0.0004 21 1 -0.3633 -0.0003 1.0276 22 1 -0.3633 0.8902 -0.5136 23 1 -0.3633 -0.8898 -0.5142 24 1 1.8026 2.1231 0.0008 25 1 6.1847 -0.7113 -0.0018 26 1 6.3058 -3.5352 -1.8741 27 1 7.9900 -3.9157 -1.4406 28 1 7.5681 -2.2898 -2.0290 29 1 10.0794 -4.7585 0.3550 30 1 1.8019 -2.1453 -0.0001 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259825003.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:57 Heat of formation + Delta-G solvation = -18.026580 kcal Electronic energy + Delta-G solvation = -14399.760304 eV Core-core repulsion = 11900.269948 eV Total energy + Delta-G solvation = -2499.490356 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.12511 -37.76816 -34.79572 -32.44108 -30.95752 -28.93681 -27.68390 -25.28127 -24.22327 -21.10329 -19.69118 -18.81769 -18.22800 -16.45971 -15.52546 -15.25926 -14.67662 -14.46211 -13.83129 -13.66811 -13.13769 -13.02608 -12.44604 -12.14552 -12.03171 -11.94950 -11.66051 -11.09300 -10.97102 -10.79716 -10.74941 -10.31618 -10.24682 -9.27532 -9.05874 -8.71740 -8.57105 -8.34507 -7.94765 -6.13264 -4.22644 0.71328 1.62826 2.02845 2.51488 3.23880 3.31553 3.34532 3.82366 4.01299 4.37107 4.94986 5.06460 5.19351 5.30074 5.49301 5.52445 5.58233 5.84069 6.05111 6.38097 6.47393 6.81914 6.95110 7.13011 7.39379 7.53009 7.67591 7.89303 8.12689 8.58861 8.74847 9.02308 9.44582 10.92902 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.045237 B = 0.005625 C = 0.005197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.809396 B = 4976.595737 C = 5386.716418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.115 4.115 3 C -0.251 4.251 4 S 0.196 5.804 5 C -0.239 4.239 6 C 0.572 3.428 7 O -0.542 6.542 8 N -0.701 5.701 9 C 0.264 3.736 10 H 0.052 0.948 11 C -0.148 4.148 12 C -0.534 4.534 13 H 0.062 0.938 14 C 0.067 3.933 15 N -0.883 5.883 16 Si 0.903 3.097 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.072 4.072 21 H 0.068 0.932 22 H 0.063 0.937 23 H 0.067 0.933 24 H 0.164 0.836 25 H 0.386 0.614 26 H 0.016 0.984 27 H 0.092 0.908 28 H 0.027 0.973 29 H 0.264 0.736 30 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.386 10.884 -1.056 16.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.129 4.129 3 C -0.388 4.388 4 S 0.464 5.536 5 C -0.360 4.360 6 C 0.356 3.644 7 O -0.422 6.422 8 N -0.348 5.348 9 C 0.162 3.838 10 H 0.069 0.931 11 C -0.206 4.206 12 C -0.573 4.573 13 H 0.080 0.920 14 C -0.137 4.137 15 N -0.520 5.520 16 Si 0.730 3.270 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.105 4.105 21 H 0.087 0.913 22 H 0.082 0.918 23 H 0.086 0.914 24 H 0.181 0.819 25 H 0.219 0.781 26 H 0.035 0.965 27 H 0.110 0.890 28 H 0.046 0.954 29 H 0.074 0.926 30 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -11.104 10.777 -1.061 15.510 hybrid contribution -0.348 0.021 0.361 0.502 sum -11.452 10.798 -0.701 15.755 Atomic orbital electron populations 1.20489 0.89749 1.02617 1.02208 1.18754 0.97665 0.91664 1.04808 1.25054 0.98874 1.03010 1.11883 1.83069 1.03535 0.99100 1.67886 1.25062 0.98495 0.97164 1.15264 1.17026 0.82365 0.87121 0.77882 1.90783 1.81778 1.18087 1.51595 1.46485 1.05333 1.11234 1.71788 1.18828 0.84220 0.86465 0.94246 0.93056 1.22087 1.00037 1.01305 0.97191 1.21241 0.95782 0.98776 1.41469 0.91964 1.24885 0.98897 0.94753 0.95120 1.69912 1.30015 1.06261 1.45835 0.86376 0.82691 0.79067 0.78866 1.19691 1.20835 1.20837 1.20626 0.91185 0.99772 0.98871 0.91323 0.91754 0.91388 0.81883 0.78105 0.96525 0.88963 0.95363 0.92580 0.83123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.82 10.13 36.01 0.36 -0.46 16 2 C -0.12 -1.42 5.78 -106.45 -0.62 -2.03 16 3 C -0.25 -2.87 10.67 29.18 0.31 -2.56 16 4 S 0.20 2.58 22.16 -107.50 -2.38 0.20 16 5 C -0.24 -4.10 6.45 -36.80 -0.24 -4.34 16 6 C 0.57 12.37 7.75 -12.90 -0.10 12.27 16 7 O -0.54 -13.64 16.50 5.18 0.09 -13.56 16 8 N -0.70 -15.46 5.06 -56.27 -0.28 -15.74 16 9 C 0.26 6.87 2.56 -69.08 -0.18 6.70 16 10 H 0.05 1.53 7.58 -51.93 -0.39 1.13 16 11 C -0.15 -3.74 9.26 37.16 0.34 -3.40 16 12 C -0.53 -14.33 8.73 -34.44 -0.30 -14.63 16 13 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 14 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 15 N -0.88 -24.94 11.32 55.43 0.63 -24.31 16 16 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 17 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 C -0.07 -1.09 9.80 -40.43 -0.40 -1.49 16 21 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 23 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 24 H 0.16 1.40 8.06 -52.48 -0.42 0.98 16 25 H 0.39 7.51 7.65 -40.82 -0.31 7.20 16 26 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 28 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.15 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 276.47 15.07 4.17 4.17 Total: -1.00 -30.58 276.47 -7.23 -37.81 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -3.52 Total: 4.00 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -0.90 Total: -8.22 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.34 Total: -40.05 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: 0.09 Total: -13.56 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 2.58 SS G_CDS: -2.38 Total: 0.20 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.58 -7.23 -37.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259825003.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.779 kcal (2) G-P(sol) polarization free energy of solvation -30.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds