Wall clock time and date at job start Sun Mar 29 2020 22:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33809 * 122.45139 * 2 1 4 4 S 1.70620 * 110.95609 * 179.74453 * 3 2 1 5 5 C 1.75836 * 91.56043 * 0.35489 * 4 3 2 6 6 C 1.46576 * 125.45536 * 179.91568 * 5 4 3 7 7 O 1.21707 * 120.00199 * 179.69321 * 6 5 4 8 8 N 1.34784 * 120.00539 * 359.69227 * 6 5 4 9 9 C 1.46497 * 120.00075 * 180.02562 * 8 6 5 10 10 H 1.08996 * 109.47049 * 324.99133 * 9 8 6 11 11 C 1.52997 * 109.47188 * 85.00024 * 9 8 6 12 12 C 1.50706 * 109.46582 * 204.99875 * 9 8 6 13 13 H 1.07999 * 120.00196 * 359.97438 * 12 9 8 14 14 C 1.37879 * 119.99394 * 179.97438 * 12 9 8 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47363 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47233 * 120.00158 * 16 14 12 19 19 H 1.48508 * 109.46883 * 239.99963 * 16 14 12 20 20 C 1.36649 * 109.08362 * 359.64850 * 5 4 3 21 21 H 1.08996 * 109.46958 * 269.98365 * 1 2 3 22 22 H 1.09004 * 109.46711 * 29.98068 * 1 2 3 23 23 H 1.08999 * 109.46795 * 149.97678 * 1 2 3 24 24 H 1.08005 * 124.52373 * 0.05189 * 3 2 1 25 25 H 0.96996 * 119.99132 * 359.97438 * 8 6 5 26 26 H 1.09002 * 109.47153 * 299.99573 * 11 9 8 27 27 H 1.09001 * 109.46832 * 179.97438 * 11 9 8 28 28 H 1.09004 * 109.47261 * 59.99745 * 11 9 8 29 29 H 0.96996 * 119.99730 * 179.97438 * 15 14 12 30 30 H 1.08000 * 123.35026 * 180.28891 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2251 1.1291 0.0000 4 16 3.8970 0.7891 0.0071 5 6 3.5937 -0.9429 -0.0008 6 6 4.6231 -1.9863 -0.0012 7 8 4.3001 -3.1598 -0.0013 8 7 5.9274 -1.6465 -0.0015 9 6 6.9561 -2.6894 -0.0026 10 1 6.6122 -3.5395 0.5866 11 6 7.2242 -3.1400 -1.4399 12 6 8.2259 -2.1430 0.5978 13 1 8.2629 -1.1210 0.9448 14 6 9.3402 -2.9480 0.7038 15 7 9.2953 -4.1924 0.2807 16 14 10.9139 -2.2709 1.4485 17 1 10.7054 -0.8546 1.8432 18 1 11.2789 -3.0703 2.6456 19 1 12.0087 -2.3495 0.4482 20 6 2.2446 -1.1602 -0.0004 21 1 -0.3633 -0.0003 1.0276 22 1 -0.3633 0.8902 -0.5136 23 1 -0.3633 -0.8898 -0.5142 24 1 1.8026 2.1231 0.0008 25 1 6.1847 -0.7113 -0.0018 26 1 6.3058 -3.5352 -1.8741 27 1 7.9900 -3.9157 -1.4406 28 1 7.5681 -2.2898 -2.0290 29 1 10.0794 -4.7585 0.3550 30 1 1.8019 -2.1453 -0.0001 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259825003.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:56 Heat of formation + Delta-G solvation = -38.067534 kcal Electronic energy + Delta-G solvation = -14400.629345 eV Core-core repulsion = 11900.269948 eV Total energy + Delta-G solvation = -2500.359397 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.73766 -38.97852 -36.75110 -34.41214 -32.24377 -30.67276 -28.61785 -27.38545 -25.62494 -22.81504 -21.44499 -19.90957 -19.72254 -18.17104 -17.28456 -16.81513 -16.36531 -16.04188 -15.28431 -14.73703 -14.58920 -14.44934 -14.02790 -13.78404 -13.22786 -13.03860 -12.94755 -12.80479 -12.78010 -12.69966 -12.31676 -12.12979 -11.83412 -11.14606 -11.04861 -10.63715 -10.03091 -9.72926 -9.32044 -8.19847 -6.38097 -0.45843 0.51181 0.98568 1.40359 1.44852 1.45326 1.58045 2.23099 2.30169 2.52398 3.10779 3.88588 4.09007 4.23175 4.42280 4.69119 4.71523 4.87162 4.89322 4.94240 5.03609 5.09012 5.35557 5.42608 5.51540 5.52601 5.62377 5.83625 6.04195 6.67100 6.79765 7.23909 7.39419 8.87124 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.045237 B = 0.005625 C = 0.005197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.809396 B = 4976.595737 C = 5386.716418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.128 4.128 3 C -0.223 4.223 4 S 0.231 5.769 5 C -0.294 4.294 6 C 0.570 3.430 7 O -0.592 6.592 8 N -0.699 5.699 9 C 0.269 3.731 10 H 0.002 0.998 11 C -0.134 4.134 12 C -0.549 4.549 13 H 0.073 0.927 14 C 0.016 3.984 15 N -0.917 5.917 16 Si 0.976 3.024 17 H -0.259 1.259 18 H -0.282 1.282 19 H -0.277 1.277 20 C -0.062 4.062 21 H 0.079 0.921 22 H 0.086 0.914 23 H 0.068 0.932 24 H 0.204 0.796 25 H 0.400 0.600 26 H 0.011 0.989 27 H 0.071 0.929 28 H 0.042 0.958 29 H 0.267 0.733 30 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.098 14.080 -0.825 19.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.141 4.141 3 C -0.361 4.361 4 S 0.499 5.501 5 C -0.414 4.414 6 C 0.358 3.642 7 O -0.476 6.476 8 N -0.347 5.347 9 C 0.166 3.834 10 H 0.020 0.980 11 C -0.193 4.193 12 C -0.587 4.587 13 H 0.091 0.909 14 C -0.184 4.184 15 N -0.555 5.555 16 Si 0.800 3.200 17 H -0.183 1.183 18 H -0.208 1.208 19 H -0.202 1.202 20 C -0.097 4.097 21 H 0.097 0.903 22 H 0.105 0.895 23 H 0.087 0.913 24 H 0.221 0.779 25 H 0.235 0.765 26 H 0.031 0.969 27 H 0.090 0.910 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -11.827 14.021 -0.835 18.362 hybrid contribution -0.249 -0.921 0.285 0.996 sum -12.076 13.100 -0.550 17.825 Atomic orbital electron populations 1.20565 0.87123 1.03866 1.03280 1.18979 0.99450 0.90557 1.05096 1.25591 0.97701 1.04545 1.08237 1.82897 1.04894 0.95226 1.67035 1.24611 0.97813 0.98746 1.20252 1.17599 0.82763 0.87644 0.76207 1.90735 1.82524 1.20621 1.53729 1.46212 1.05140 1.11079 1.72295 1.18463 0.85105 0.86151 0.93674 0.98020 1.21909 0.99098 1.01088 0.97182 1.21532 0.96059 0.99359 1.41800 0.90870 1.25821 1.02403 0.94894 0.95327 1.70056 1.31091 1.07622 1.46700 0.85238 0.78123 0.78816 0.77803 1.18315 1.20842 1.20216 1.20858 0.90867 1.00836 0.97106 0.90278 0.89478 0.91284 0.77869 0.76488 0.96943 0.91035 0.93917 0.92395 0.84058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.29 10.13 71.24 0.72 -0.57 16 2 C -0.13 -2.78 5.78 -21.05 -0.12 -2.90 16 3 C -0.22 -4.18 10.67 66.81 0.71 -3.47 16 4 S 0.23 5.53 22.16 -56.49 -1.25 4.28 16 5 C -0.29 -10.06 6.45 24.07 0.16 -9.91 16 6 C 0.57 25.66 7.75 86.42 0.67 26.33 16 7 O -0.59 -31.67 16.50 -4.37 -0.07 -31.74 16 8 N -0.70 -31.69 5.06 -450.16 -2.28 -33.96 16 9 C 0.27 14.58 2.56 44.25 0.11 14.70 16 10 H 0.00 0.12 7.58 -2.39 -0.02 0.10 16 11 C -0.13 -7.04 9.26 71.98 0.67 -6.37 16 12 C -0.55 -29.78 8.73 25.60 0.22 -29.55 16 13 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 14 C 0.02 0.86 5.30 84.66 0.45 1.31 16 15 N -0.92 -53.03 11.32 21.45 0.24 -52.79 16 16 Si 0.98 42.18 29.54 68.60 2.03 44.21 16 17 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 18 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 19 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 20 C -0.06 -1.85 9.80 21.72 0.21 -1.64 16 21 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 22 H 0.09 0.88 8.12 -2.38 -0.02 0.86 16 23 H 0.07 0.99 8.13 -2.39 -0.02 0.97 16 24 H 0.20 2.21 8.06 -2.91 -0.02 2.19 16 25 H 0.40 15.59 7.65 -92.71 -0.71 14.88 16 26 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.07 4.05 6.07 -2.39 -0.01 4.04 16 28 H 0.04 2.05 8.14 -2.38 -0.02 2.03 16 29 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 30 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -68.88 276.47 2.91 -65.97 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.44 Total: 16.11 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: 3.80 Total: -12.07 kcal Atomic # 7 Polarization: -84.72 SS G_CDS: -2.04 Total: -86.75 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -0.07 Total: -31.74 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Atomic # 16 Polarization: 5.53 SS G_CDS: -1.25 Total: 4.28 kcal Total: -68.88 2.91 -65.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259825003.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.901 kcal (2) G-P(sol) polarization free energy of solvation -68.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds