Wall clock time and date at job start Sun Mar 29 2020 22:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81004 * 1 3 3 C 1.76201 * 99.99766 * 2 1 4 4 C 1.39798 * 120.49541 * 179.97438 * 3 2 1 5 5 C 1.38104 * 118.48911 * 180.02562 * 4 3 2 6 6 C 1.50701 * 120.35071 * 179.97438 * 5 4 3 7 7 N 1.32501 * 119.29666 * 0.02562 * 5 4 3 8 8 C 1.32514 * 120.95025 * 359.97438 * 7 5 4 9 9 N 1.38440 * 119.17382 * 180.28640 * 8 7 5 10 10 C 1.46495 * 119.99716 * 359.72215 * 9 8 7 11 11 C 1.36991 * 119.99895 * 179.72637 * 9 8 7 12 12 H 1.08004 * 119.99625 * 22.49734 * 11 9 8 13 13 C 1.38829 * 120.00010 * 202.49378 * 11 9 8 14 14 N 1.31541 * 119.99477 * 11.07787 * 13 11 9 15 15 Si 1.86797 * 120.00062 * 191.07374 * 13 11 9 16 16 H 1.48494 * 109.47078 * 60.00121 * 15 13 11 17 17 H 1.48496 * 109.47102 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47211 * 300.00170 * 15 13 11 19 19 N 1.32500 * 121.65289 * 0.02562 * 8 7 5 20 20 H 1.08997 * 109.46964 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47157 * 300.00498 * 1 2 3 22 22 H 1.09004 * 109.46820 * 60.00656 * 1 2 3 23 23 H 1.08001 * 120.75494 * 0.04076 * 4 3 2 24 24 H 1.09001 * 109.46730 * 90.00265 * 6 5 4 25 25 H 1.08999 * 109.46772 * 209.99904 * 6 5 4 26 26 H 1.08995 * 109.47100 * 330.00337 * 6 5 4 27 27 H 1.09010 * 109.46977 * 93.91587 * 10 9 8 28 28 H 1.08998 * 109.47174 * 213.91263 * 10 9 8 29 29 H 1.08998 * 109.47671 * 333.92075 * 10 9 8 30 30 H 0.97005 * 119.99732 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 6 3.4254 2.2248 0.0005 5 6 3.6174 3.5924 0.0011 6 6 5.0111 4.1657 0.0022 7 7 2.5632 4.3951 0.0016 8 6 1.3325 3.9038 0.0010 9 7 0.2576 4.7763 -0.0045 10 6 0.4885 6.2229 -0.0035 11 6 -1.0218 4.2867 -0.0107 12 1 -1.2191 3.2867 0.3464 13 6 -2.0648 5.0761 -0.4760 14 7 -1.8071 6.2001 -1.1090 15 14 -3.8339 4.5420 -0.2034 16 1 -4.0962 4.4233 1.2533 17 1 -4.7516 5.5505 -0.7916 18 1 -4.0602 3.2273 -0.8559 19 7 1.1049 2.5985 0.0005 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 4.2677 1.5488 0.0003 24 1 5.3478 4.3042 -1.0252 25 1 5.0081 5.1268 0.5163 26 1 5.6853 3.4807 0.5163 27 1 0.4816 6.5927 -1.0289 28 1 -0.2993 6.7162 0.5659 29 1 1.4549 6.4364 0.4531 30 1 -2.5358 6.7515 -1.4344 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259993348.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:52 Heat of formation + Delta-G solvation = 45.616919 kcal Electronic energy + Delta-G solvation = -14924.317498 eV Core-core repulsion = 12459.879681 eV Total energy + Delta-G solvation = -2464.437816 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.41808 -38.01476 -34.95593 -34.13356 -31.87867 -29.85896 -29.37598 -28.14345 -26.33938 -24.05364 -22.83964 -19.43258 -18.74801 -17.83566 -17.23871 -16.33078 -16.18022 -15.97691 -15.21206 -14.91503 -14.73369 -14.43251 -14.18796 -13.61198 -13.38707 -13.23942 -13.12214 -12.84950 -12.69561 -12.45313 -12.16306 -11.79879 -11.74739 -11.46154 -11.23282 -10.65672 -9.73043 -9.21384 -8.60716 -8.36340 -5.89054 0.36992 0.56254 0.61794 1.24268 1.38301 1.44725 1.50005 2.15579 2.69306 2.81287 3.29257 3.61310 4.14131 4.32841 4.33224 4.42432 4.57188 4.66508 4.79611 4.86546 4.93609 4.99213 5.05737 5.12999 5.24903 5.39844 5.63448 5.96548 6.40252 6.55795 7.15547 7.34111 7.91187 8.63353 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.021929 B = 0.009482 C = 0.006730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.517978 B = 2952.128584 C = 4159.251994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 S -0.048 6.048 3 C 0.182 3.818 4 C -0.326 4.326 5 C 0.213 3.787 6 C -0.090 4.090 7 N -0.617 5.617 8 C 0.502 3.498 9 N -0.423 5.423 10 C 0.154 3.846 11 C -0.314 4.314 12 H 0.094 0.906 13 C -0.014 4.014 14 N -0.901 5.901 15 Si 1.000 3.000 16 H -0.266 1.266 17 H -0.275 1.275 18 H -0.268 1.268 19 N -0.598 5.598 20 H 0.131 0.869 21 H 0.073 0.927 22 H 0.070 0.930 23 H 0.159 0.841 24 H 0.092 0.908 25 H 0.074 0.926 26 H 0.104 0.896 27 H 0.039 0.961 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.780 -7.636 2.193 10.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S 0.188 5.812 3 C -0.079 4.079 4 C -0.362 4.362 5 C 0.062 3.938 6 C -0.147 4.147 7 N -0.347 5.347 8 C 0.146 3.854 9 N -0.119 5.119 10 C 0.010 3.990 11 C -0.443 4.443 12 H 0.112 0.888 13 C -0.216 4.216 14 N -0.538 5.538 15 Si 0.823 3.177 16 H -0.191 1.191 17 H -0.200 1.200 18 H -0.193 1.193 19 N -0.328 5.328 20 H 0.149 0.851 21 H 0.092 0.908 22 H 0.089 0.911 23 H 0.177 0.823 24 H 0.111 0.889 25 H 0.093 0.907 26 H 0.123 0.877 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.267 -7.570 2.097 10.049 hybrid contribution -1.233 0.696 -0.122 1.421 sum 5.035 -6.873 1.975 8.746 Atomic orbital electron populations 1.23369 0.93407 1.06894 1.05820 1.84962 1.08594 0.96492 1.91171 1.23593 0.92263 0.99237 0.92817 1.21754 0.96469 0.96911 1.21037 1.21893 0.95522 0.89846 0.86569 1.20762 0.87800 1.01984 1.04175 1.67749 0.98120 1.40772 1.28016 1.19534 0.86389 0.85739 0.93766 1.42427 1.02272 1.04179 1.62992 1.21143 0.98462 0.78842 1.00532 1.19824 0.81571 1.02128 1.40812 0.88839 1.26311 1.04416 0.96169 0.94711 1.70196 1.34315 1.14171 1.35150 0.84883 0.75773 0.78156 0.78914 1.19092 1.19969 1.19274 1.68146 1.34348 1.02550 1.27799 0.85076 0.90789 0.91126 0.82349 0.88945 0.90710 0.87711 0.94284 0.92821 0.92697 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.82 9.68 113.37 1.10 -2.73 16 2 S -0.05 -1.52 22.74 -56.49 -1.28 -2.80 16 3 C 0.18 7.48 7.01 84.90 0.60 8.08 16 4 C -0.33 -11.90 9.62 22.62 0.22 -11.68 16 5 C 0.21 8.06 6.81 42.43 0.29 8.35 16 6 C -0.09 -2.28 10.21 71.24 0.73 -1.55 16 7 N -0.62 -28.98 8.98 -186.23 -1.67 -30.66 16 8 C 0.50 26.28 8.13 261.46 2.13 28.40 16 9 N -0.42 -23.34 3.11 -547.68 -1.70 -25.04 16 10 C 0.15 7.86 8.72 127.77 1.11 8.98 16 11 C -0.31 -17.53 9.29 84.03 0.78 -16.75 16 12 H 0.09 5.25 7.31 -2.91 -0.02 5.23 16 13 C -0.01 -0.75 5.13 84.88 0.44 -0.32 16 14 N -0.90 -49.13 10.58 21.65 0.23 -48.90 16 15 Si 1.00 41.72 29.57 68.60 2.03 43.74 16 16 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 17 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 18 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 19 N -0.60 -29.37 8.09 -194.02 -1.57 -30.94 16 20 H 0.13 2.87 8.14 -2.40 -0.02 2.85 16 21 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 22 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 23 H 0.16 4.55 8.06 -2.91 -0.02 4.53 16 24 H 0.09 2.07 8.14 -2.39 -0.02 2.06 16 25 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.10 1.97 8.09 -2.39 -0.02 1.95 16 27 H 0.04 2.09 7.44 -2.38 -0.02 2.08 16 28 H 0.05 2.77 7.17 -2.39 -0.02 2.75 16 29 H 0.05 2.59 7.21 -2.39 -0.02 2.57 16 30 H 0.27 13.98 8.31 -92.70 -0.77 13.21 16 Total: -1.00 -64.94 273.29 4.55 -60.39 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 1.14 Total: 13.43 kcal Atomic # 6 Polarization: 13.39 SS G_CDS: 7.38 Total: 20.78 kcal Atomic # 7 Polarization: -130.82 SS G_CDS: -4.72 Total: -135.54 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.74 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -1.28 Total: -2.80 kcal Total: -64.94 4.55 -60.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259993348.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.007 kcal (2) G-P(sol) polarization free energy of solvation -64.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds