Wall clock time and date at job start Sun Mar 29 2020 22:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33816 * 122.44996 * 2 1 4 4 S 1.70616 * 110.95651 * 179.73296 * 3 2 1 5 5 C 1.75835 * 91.56132 * 0.24148 * 4 3 2 6 6 C 1.46580 * 125.45706 * 180.02562 * 5 4 3 7 7 O 1.21701 * 120.00034 * 171.36185 * 6 5 4 8 8 N 1.34779 * 120.00078 * 351.36125 * 6 5 4 9 9 C 1.46494 * 120.00048 * 0.14635 * 8 6 5 10 10 C 1.46498 * 119.99789 * 180.14167 * 8 6 5 11 11 C 1.50701 * 109.47134 * 90.00253 * 10 8 6 12 12 H 1.07990 * 119.99912 * 359.97438 * 11 10 8 13 13 C 1.37875 * 119.99738 * 179.97438 * 11 10 8 14 14 N 1.31513 * 120.00337 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99836 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.46970 * 60.00231 * 15 13 11 17 17 H 1.48504 * 109.46957 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46902 * 300.00016 * 15 13 11 19 19 C 1.36644 * 109.08263 * 0.02562 * 5 4 3 20 20 H 1.09001 * 109.47324 * 90.02323 * 1 2 3 21 21 H 1.09001 * 109.47327 * 210.02525 * 1 2 3 22 22 H 1.09004 * 109.47246 * 330.02566 * 1 2 3 23 23 H 1.08003 * 124.52077 * 359.97438 * 3 2 1 24 24 H 1.08991 * 109.47803 * 83.45733 * 9 8 6 25 25 H 1.09001 * 109.47119 * 203.46113 * 9 8 6 26 26 H 1.09006 * 109.47219 * 323.45933 * 9 8 6 27 27 H 1.09007 * 109.46845 * 210.00019 * 10 8 6 28 28 H 1.09002 * 109.47530 * 330.00139 * 10 8 6 29 29 H 0.97006 * 120.00304 * 179.97438 * 14 13 11 30 30 H 1.08006 * 123.35216 * 180.02562 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 16 3.8969 0.7893 0.0074 5 6 3.5937 -0.9427 0.0032 6 6 4.6231 -1.9862 0.0069 7 8 4.3078 -3.1514 0.1618 8 7 5.9188 -1.6553 -0.1612 9 6 6.2986 -0.2524 -0.3444 10 6 6.9472 -2.6986 -0.1605 11 6 7.1544 -3.2006 -1.5663 12 1 6.5774 -2.7844 -2.3787 13 6 8.0807 -4.1911 -1.8150 14 7 8.7830 -4.6982 -0.8254 15 14 8.3370 -4.8139 -3.5574 16 1 8.7714 -3.6904 -4.4257 17 1 9.3797 -5.8714 -3.5567 18 1 7.0633 -5.3756 -4.0747 19 6 2.2446 -1.1600 -0.0042 20 1 -0.3634 -0.0004 -1.0277 21 1 -0.3634 -0.8898 0.5142 22 1 -0.3634 0.8902 0.5134 23 1 1.8025 2.1232 -0.0004 24 1 6.3849 0.2308 0.6288 25 1 7.2562 -0.1999 -0.8623 26 1 5.5372 0.2560 -0.9360 27 1 7.8822 -2.2868 0.2198 28 1 6.6277 -3.5234 0.4765 29 1 9.4344 -5.3954 -1.0004 30 1 1.8019 -2.1452 -0.0076 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260134843.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:45 Heat of formation + Delta-G solvation = -2.848829 kcal Electronic energy + Delta-G solvation = -14593.196484 eV Core-core repulsion = 12094.364284 eV Total energy + Delta-G solvation = -2498.832200 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.15025 -37.73900 -34.88187 -32.69199 -30.83354 -28.33714 -27.34742 -26.14752 -24.29713 -22.14613 -19.34811 -18.76643 -17.32838 -16.54704 -15.66814 -15.44614 -14.76594 -14.63844 -13.88534 -13.70861 -13.11996 -12.83403 -12.57994 -12.46346 -12.17218 -11.89119 -11.84368 -11.76350 -11.23864 -10.95648 -10.63019 -10.31340 -10.11887 -9.69092 -9.15759 -8.62260 -8.44673 -8.19661 -7.69621 -6.05750 -4.10956 0.80708 1.72851 2.16216 2.60266 3.32080 3.36447 3.39622 3.76678 3.93580 4.44137 4.96790 5.05966 5.25214 5.29945 5.39293 5.48606 5.58029 5.66566 5.74172 5.90445 6.07761 6.11016 6.45749 6.57681 7.00665 7.38741 7.45926 7.89937 8.19684 8.28797 8.84759 8.99804 9.54095 11.02308 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.040135 B = 0.006080 C = 0.005826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.481702 B = 4603.842708 C = 4804.665894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.116 4.116 3 C -0.280 4.280 4 S 0.217 5.783 5 C -0.242 4.242 6 C 0.574 3.426 7 O -0.528 6.528 8 N -0.594 5.594 9 C 0.069 3.931 10 C 0.246 3.754 11 C -0.530 4.530 12 H 0.058 0.942 13 C 0.062 3.938 14 N -0.894 5.894 15 Si 0.899 3.101 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.276 1.276 19 C -0.070 4.070 20 H 0.066 0.934 21 H 0.066 0.934 22 H 0.062 0.938 23 H 0.158 0.842 24 H 0.055 0.945 25 H 0.093 0.907 26 H 0.064 0.936 27 H 0.036 0.964 28 H 0.047 0.953 29 H 0.264 0.736 30 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.667 13.614 1.761 17.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.129 4.129 3 C -0.417 4.417 4 S 0.487 5.513 5 C -0.363 4.363 6 C 0.359 3.641 7 O -0.407 6.407 8 N -0.326 5.326 9 C -0.077 4.077 10 C 0.128 3.872 11 C -0.568 4.568 12 H 0.076 0.924 13 C -0.140 4.140 14 N -0.533 5.533 15 Si 0.727 3.273 16 H -0.202 1.202 17 H -0.211 1.211 18 H -0.201 1.201 19 C -0.103 4.103 20 H 0.085 0.915 21 H 0.085 0.915 22 H 0.081 0.919 23 H 0.175 0.825 24 H 0.073 0.927 25 H 0.112 0.888 26 H 0.081 0.919 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.350 13.781 1.907 16.763 hybrid contribution -1.175 -1.041 -1.044 1.885 sum -10.526 12.740 0.864 16.549 Atomic orbital electron populations 1.20492 0.90172 1.02432 1.02054 1.18702 0.97426 0.91737 1.05078 1.25656 1.02385 1.02664 1.10958 1.83567 1.00996 0.99069 1.67700 1.24995 0.98447 0.96971 1.15871 1.16955 0.81778 0.87004 0.78315 1.90800 1.80895 1.18594 1.50432 1.48057 1.07000 1.08168 1.69337 1.21868 1.01986 0.82873 1.00952 1.19376 0.84389 0.85465 0.98008 1.21389 1.21274 1.20843 0.93329 0.92414 1.24927 0.95584 0.95973 0.97499 1.69921 1.24603 1.27593 1.31196 0.86537 0.77912 0.78512 0.84349 1.20207 1.21118 1.20144 1.20588 0.91257 0.99699 0.98748 0.91501 0.91516 0.91913 0.82476 0.92659 0.88828 0.91908 0.94581 0.93487 0.92588 0.83304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.91 10.13 36.00 0.36 -0.55 16 2 C -0.12 -1.53 5.78 -106.45 -0.62 -2.14 16 3 C -0.28 -3.38 10.67 29.18 0.31 -3.06 16 4 S 0.22 2.85 17.90 -107.50 -1.92 0.93 16 5 C -0.24 -4.31 6.23 -36.80 -0.23 -4.54 16 6 C 0.57 12.92 7.64 -12.90 -0.10 12.82 16 7 O -0.53 -14.05 16.43 5.19 0.09 -13.96 16 8 N -0.59 -13.13 2.86 -184.55 -0.53 -13.65 16 9 C 0.07 1.14 8.92 59.84 0.53 1.67 16 10 C 0.25 6.51 5.13 -5.19 -0.03 6.49 16 11 C -0.53 -15.14 9.39 -34.44 -0.32 -15.46 16 12 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 13 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 14 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 15 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 C -0.07 -1.13 9.81 -40.44 -0.40 -1.52 16 20 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 21 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 22 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 23 H 0.16 1.47 8.06 -52.48 -0.42 1.04 16 24 H 0.06 0.77 7.76 -51.93 -0.40 0.36 16 25 H 0.09 1.51 8.02 -51.93 -0.42 1.09 16 26 H 0.06 0.93 4.61 -23.23 -0.11 0.82 16 27 H 0.04 0.94 8.07 -51.92 -0.42 0.53 16 28 H 0.05 1.39 7.42 -51.93 -0.39 1.01 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.15 2.38 8.06 -52.48 -0.42 1.96 16 LS Contribution 273.00 15.07 4.11 4.11 Total: -1.00 -32.91 273.00 -6.50 -39.42 By element: Atomic # 1 Polarization: 0.08 SS G_CDS: -3.39 Total: -3.31 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -0.58 Total: -4.61 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.21 Total: -39.48 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: 0.09 Total: -13.96 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -1.92 Total: 0.93 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -32.91 -6.50 -39.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260134843.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.567 kcal (2) G-P(sol) polarization free energy of solvation -32.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds