Wall clock time and date at job start Sun Mar 29 2020 22:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00308 * 2 1 4 4 H 1.48502 * 109.46800 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47349 * 119.99650 * 3 2 1 6 6 H 1.48501 * 109.47322 * 239.99904 * 3 2 1 7 7 C 1.37884 * 120.00130 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00111 * 185.36462 * 7 2 1 9 9 C 1.50702 * 119.99442 * 5.36276 * 7 2 1 10 10 O 1.42896 * 110.27723 * 54.99438 * 9 7 2 11 11 C 1.54598 * 110.30320 * 177.08693 * 9 7 2 12 12 C 1.55196 * 102.80077 * 96.97872 * 11 9 7 13 13 N 1.48530 * 103.23761 * 37.43468 * 12 11 9 14 14 C 1.46905 * 111.00025 * 200.25275 * 13 12 11 15 15 C 1.52999 * 109.47188 * 307.39921 * 14 13 12 16 16 F 1.39899 * 109.47476 * 59.99500 * 15 14 13 17 17 F 1.39904 * 109.47060 * 179.97438 * 15 14 13 18 18 F 1.39905 * 109.46906 * 299.99367 * 15 14 13 19 19 C 1.47906 * 105.82026 * 320.76544 * 13 12 11 20 20 H 0.96999 * 120.00552 * 175.18352 * 1 2 3 21 21 H 0.96700 * 113.99361 * 62.15517 * 10 9 7 22 22 H 1.08998 * 110.71901 * 215.31111 * 11 9 7 23 23 H 1.09000 * 110.72665 * 338.59607 * 11 9 7 24 24 H 1.08994 * 110.68635 * 278.98287 * 12 11 9 25 25 H 1.09005 * 110.78507 * 155.92939 * 12 11 9 26 26 H 1.09008 * 109.46829 * 67.39300 * 14 13 12 27 27 H 1.08999 * 109.47211 * 187.39172 * 14 13 12 28 28 H 1.08998 * 109.91704 * 265.98206 * 19 13 12 29 29 H 1.08998 * 110.07795 * 144.77388 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0809 -1.1961 0.0880 9 6 1.2559 -2.4964 -0.1209 10 8 0.4343 -2.4881 -1.2900 11 6 2.2466 -3.6822 -0.1695 12 6 2.2705 -4.1708 1.3033 13 7 0.8603 -4.0056 1.7395 14 6 0.7648 -3.9553 3.2045 15 6 1.4769 -5.1695 3.8041 16 9 2.8231 -5.1555 3.4237 17 9 1.3864 -5.1212 5.1993 18 9 0.8726 -6.3419 3.3374 19 6 0.3970 -2.7380 1.1343 20 1 -0.4851 -0.8370 -0.0705 21 1 0.9282 -2.4048 -2.1171 22 1 1.8776 -4.4661 -0.8307 23 1 3.2353 -3.3462 -0.4819 24 1 2.9344 -3.5496 1.9044 25 1 2.5702 -5.2174 1.3588 26 1 1.2356 -3.0418 3.5682 27 1 -0.2841 -3.9661 3.5009 28 1 0.5319 -1.9185 1.8400 29 1 -0.6536 -2.8186 0.8553 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260188010.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:03 Heat of formation + Delta-G solvation = -199.389356 kcal Electronic energy + Delta-G solvation = -18271.207355 eV Core-core repulsion = 14779.242907 eV Total energy + Delta-G solvation = -3491.964448 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.087 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.97140 -47.53230 -47.37419 -38.66255 -35.27177 -32.30008 -31.27354 -28.06831 -27.00151 -24.31330 -22.84817 -20.87374 -19.80702 -18.43285 -18.24740 -17.69101 -16.80362 -15.83530 -14.94313 -14.37400 -14.28268 -14.02226 -13.87574 -13.81152 -13.74209 -13.56664 -13.49979 -12.94101 -12.47687 -12.10320 -11.92739 -11.38989 -11.04502 -10.86787 -10.61122 -10.50576 -10.17028 -10.13490 -9.30600 -8.61006 -8.30124 -7.93123 -6.42269 -4.28857 2.88872 3.35663 3.37281 3.56257 3.86980 4.02743 4.22470 4.42292 4.70089 5.19460 5.31743 5.38247 5.44093 5.56035 5.74055 6.02800 6.22115 6.44958 6.58009 6.63250 6.81398 7.04210 7.26674 7.30753 7.94258 8.24541 8.77159 9.01610 9.56386 10.95423 Molecular weight = 239.09amu Principal moments of inertia in cm(-1) A = 0.035107 B = 0.007665 C = 0.007189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.362285 B = 3651.973038 C = 3893.772869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.036 3.964 3 Si 1.064 2.936 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.287 1.287 7 C -0.641 4.641 8 H 0.052 0.948 9 C 0.232 3.768 10 O -0.574 6.574 11 C -0.144 4.144 12 C 0.032 3.968 13 N -0.513 5.513 14 C 0.001 3.999 15 C 0.455 3.545 16 F -0.182 7.182 17 F -0.188 7.188 18 F -0.176 7.176 19 C 0.062 3.938 20 H 0.287 0.713 21 H 0.361 0.639 22 H 0.060 0.940 23 H 0.067 0.933 24 H 0.053 0.947 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.115 0.885 28 H 0.061 0.939 29 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.091 -7.445 5.617 9.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.173 4.173 3 Si 0.893 3.107 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.679 4.679 8 H 0.070 0.930 9 C 0.192 3.808 10 O -0.379 6.379 11 C -0.182 4.182 12 C -0.095 4.095 13 N -0.238 5.238 14 C -0.129 4.129 15 C 0.401 3.599 16 F -0.164 7.164 17 F -0.170 7.170 18 F -0.158 7.158 19 C -0.065 4.065 20 H 0.099 0.901 21 H 0.206 0.794 22 H 0.079 0.921 23 H 0.086 0.914 24 H 0.071 0.929 25 H 0.093 0.907 26 H 0.099 0.901 27 H 0.133 0.867 28 H 0.079 0.921 29 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.077 -6.337 5.986 8.961 hybrid contribution 1.338 -1.136 0.037 1.756 sum 3.416 -7.473 6.022 10.187 Atomic orbital electron populations 1.70652 1.06852 1.32829 1.42127 1.25765 0.96505 1.02350 0.92698 0.83621 0.74993 0.75533 0.76588 1.20696 1.21552 1.21324 1.22395 0.94620 0.91706 1.59135 0.92958 1.19630 0.85982 0.92375 0.82784 1.86371 1.38807 1.96521 1.16186 1.23233 1.01046 0.98965 0.94955 1.23482 0.88658 1.00336 0.97040 1.65013 1.19521 1.36375 1.02939 1.23469 1.02856 0.93643 0.92972 1.20596 0.77588 0.86062 0.75677 1.93175 1.35816 1.96761 1.90628 1.93163 1.96113 1.96711 1.30988 1.93186 1.83057 1.51217 1.88334 1.22975 0.99796 0.87018 0.96724 0.90052 0.79379 0.92100 0.91410 0.92916 0.90710 0.90080 0.86667 0.92106 0.90943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.58 13.27 55.43 0.74 -24.84 15 2 C 0.04 0.98 5.15 -17.82 -0.09 0.88 15 3 Si 1.06 23.94 29.91 -169.99 -5.08 18.86 15 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 5 H -0.29 -6.25 7.11 56.52 0.40 -5.85 15 6 H -0.29 -6.20 7.11 56.52 0.40 -5.80 15 7 C -0.64 -16.80 7.99 -34.44 -0.27 -17.08 15 8 H 0.05 1.38 7.56 -52.49 -0.40 0.98 15 9 C 0.23 5.52 0.84 -90.41 -0.08 5.44 15 10 O -0.57 -13.95 11.48 -35.23 -0.40 -14.35 15 11 C -0.14 -2.94 6.34 -24.73 -0.16 -3.10 15 12 C 0.03 0.61 4.71 -1.76 -0.01 0.60 15 13 N -0.51 -9.84 5.32 -230.28 -1.23 -11.07 15 14 C 0.00 0.01 5.15 -3.82 -0.02 -0.01 15 15 C 0.46 6.81 3.07 37.16 0.11 6.93 15 16 F -0.18 -2.86 13.56 2.25 0.03 -2.83 15 17 F -0.19 -2.65 17.32 2.25 0.04 -2.61 15 18 F -0.18 -2.76 17.24 2.25 0.04 -2.73 15 19 C 0.06 1.39 4.75 -2.75 -0.01 1.38 15 20 H 0.29 8.30 5.31 -40.82 -0.22 8.08 15 21 H 0.36 7.74 9.08 45.56 0.41 8.15 15 22 H 0.06 1.19 8.08 -51.93 -0.42 0.77 15 23 H 0.07 1.36 7.68 -51.93 -0.40 0.96 15 24 H 0.05 1.01 7.36 -51.93 -0.38 0.63 15 25 H 0.07 1.30 6.96 -51.93 -0.36 0.94 15 26 H 0.08 1.27 7.81 -51.92 -0.41 0.87 15 27 H 0.12 1.61 8.14 -51.93 -0.42 1.19 15 28 H 0.06 1.46 6.91 -51.93 -0.36 1.10 15 29 H 0.07 1.71 7.73 -51.93 -0.40 1.31 15 LS Contribution 250.02 15.07 3.77 3.77 Total: -1.00 -28.65 250.02 -4.77 -33.43 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -2.15 Total: 7.32 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -0.53 Total: -4.95 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: -0.49 Total: -35.91 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.40 Total: -14.35 kcal Atomic # 9 Polarization: -8.27 SS G_CDS: 0.11 Total: -8.16 kcal Atomic # 14 Polarization: 23.94 SS G_CDS: -5.08 Total: 18.86 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -28.65 -4.77 -33.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260188010.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.964 kcal (2) G-P(sol) polarization free energy of solvation -28.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds