Wall clock time and date at job start Sun Mar 29 2020 22:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99964 * 2 1 4 4 H 1.48497 * 109.47147 * 240.00171 * 3 2 1 5 5 H 1.48506 * 109.46918 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47369 * 119.99834 * 3 2 1 7 7 C 1.38807 * 120.00213 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00081 * 158.51126 * 7 2 1 9 9 N 1.36934 * 120.00212 * 338.51772 * 7 2 1 10 10 C 1.46510 * 119.99855 * 325.41405 * 9 7 2 11 11 C 1.53002 * 109.46951 * 265.57338 * 10 9 7 12 12 F 1.39895 * 109.47193 * 59.99760 * 11 10 9 13 13 F 1.39900 * 109.46785 * 179.97438 * 11 10 9 14 14 F 1.39898 * 109.46820 * 299.99721 * 11 10 9 15 15 C 1.46499 * 120.00661 * 145.41308 * 9 7 2 16 16 H 1.08991 * 110.80939 * 183.62689 * 15 9 7 17 17 C 1.54814 * 110.90392 * 59.99987 * 15 9 7 18 18 C 1.54106 * 104.18526 * 262.68506 * 17 15 9 19 19 O 1.43735 * 107.42279 * 1.95630 * 18 17 15 20 20 C 1.44577 * 106.87034 * 333.67125 * 19 18 17 21 21 H 0.97003 * 120.00103 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46646 * 25.57117 * 10 9 7 23 23 H 1.09001 * 109.46783 * 145.57134 * 10 9 7 24 24 H 1.09000 * 110.49064 * 144.00804 * 17 15 9 25 25 H 1.08995 * 110.49166 * 21.36078 * 17 15 9 26 26 H 1.08997 * 109.87755 * 121.46119 * 18 17 15 27 27 H 1.09003 * 109.87612 * 242.45041 * 18 17 15 28 28 H 1.09000 * 110.50443 * 281.38211 * 20 19 18 29 29 H 1.08995 * 110.77572 * 158.51345 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0340 -1.2347 -0.3421 9 7 1.3970 -2.3466 0.4353 10 6 0.4242 -2.2862 1.5291 11 6 1.1286 -2.5804 2.8551 12 9 2.1324 -1.6301 3.0707 13 9 0.1997 -2.5222 3.8995 14 9 1.6979 -3.8574 2.8073 15 6 1.7137 -3.6315 -0.1931 16 1 1.0972 -4.4283 0.2228 17 6 3.2186 -3.9629 -0.0450 18 6 3.8379 -3.5125 -1.3823 19 8 2.7834 -2.9402 -2.1738 20 6 1.5491 -3.5499 -1.7321 21 1 -0.4850 0.8401 0.0004 22 1 -0.0194 -1.2913 1.5662 23 1 -0.3579 -3.0267 1.3610 24 1 3.3611 -5.0338 0.0999 25 1 3.6527 -3.4039 0.7839 26 1 4.6113 -2.7663 -1.1999 27 1 4.2662 -4.3708 -1.9001 28 1 1.4412 -4.5466 -2.1600 29 1 0.6945 -2.9264 -1.9943 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261152627.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:04 Heat of formation + Delta-G solvation = -180.681301 kcal Electronic energy + Delta-G solvation = -18762.589965 eV Core-core repulsion = 15271.436760 eV Total energy + Delta-G solvation = -3491.153206 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.087 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.03437 -46.63991 -46.45981 -38.70984 -35.21052 -31.75782 -30.27898 -28.45623 -27.16959 -23.98496 -22.15769 -21.48739 -19.91303 -17.70810 -17.46587 -17.00913 -16.06670 -15.57064 -15.23473 -14.53315 -14.17634 -13.64762 -13.52411 -13.26298 -13.04481 -13.02083 -12.78245 -12.72874 -12.63589 -11.69620 -11.34509 -11.15258 -10.79527 -10.76511 -10.58771 -10.48529 -10.41561 -10.03814 -9.96955 -8.89821 -8.60626 -6.92592 -5.98441 -3.51516 3.37431 3.41742 3.46031 3.87723 4.36225 4.71045 4.88270 5.06131 5.20714 5.23475 5.47267 5.58514 5.66413 5.78570 5.95475 6.12215 6.28852 6.31435 6.35197 6.48828 6.66858 6.88103 7.08841 7.67326 7.79937 8.26018 8.94963 9.57555 10.07138 11.07314 Molecular weight = 239.09amu Principal moments of inertia in cm(-1) A = 0.017286 B = 0.016041 C = 0.010068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.464495 B = 1745.082473 C = 2780.390266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.014 3.986 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.248 4.248 8 H 0.076 0.924 9 N -0.554 5.554 10 C 0.106 3.894 11 C 0.408 3.592 12 F -0.184 7.184 13 F -0.210 7.210 14 F -0.204 7.204 15 C 0.138 3.862 16 H 0.071 0.929 17 C -0.166 4.166 18 C 0.056 3.944 19 O -0.364 6.364 20 C 0.045 3.955 21 H 0.259 0.741 22 H 0.140 0.860 23 H 0.069 0.931 24 H 0.061 0.939 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.039 0.961 28 H 0.040 0.960 29 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.806 -6.790 1.790 7.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.186 4.186 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.206 1.206 7 C -0.376 4.376 8 H 0.094 0.906 9 N -0.270 5.270 10 C -0.025 4.025 11 C 0.350 3.650 12 F -0.165 7.165 13 F -0.192 7.192 14 F -0.185 7.185 15 C 0.031 3.969 16 H 0.089 0.911 17 C -0.206 4.206 18 C -0.022 4.022 19 O -0.282 6.282 20 C -0.033 4.033 21 H 0.069 0.931 22 H 0.157 0.843 23 H 0.087 0.913 24 H 0.080 0.920 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.739 -6.477 1.587 6.891 hybrid contribution 0.591 0.583 0.544 0.993 sum 2.330 -5.894 2.131 6.686 Atomic orbital electron populations 1.69872 1.05565 1.26459 1.51848 1.25121 0.95108 0.99058 0.99279 0.86350 0.79303 0.82669 0.78522 1.20427 1.21539 1.20607 1.19060 0.95115 0.84391 1.39083 0.90608 1.43707 1.47657 1.03243 1.32377 1.22362 0.91406 1.07537 0.81188 1.23417 0.78391 0.73177 0.89997 1.93119 1.63022 1.64683 1.95691 1.93061 1.66642 1.96242 1.63225 1.93048 1.86491 1.42150 1.96860 1.22063 0.93523 0.88735 0.92626 0.91074 1.23349 0.98695 1.00022 0.98513 1.22913 0.91625 0.96745 0.90877 1.88924 1.15635 1.64771 1.58863 1.23893 0.88638 0.96043 0.94729 0.93072 0.84283 0.91321 0.92048 0.90264 0.91017 0.94318 0.94145 0.88599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.16 11.32 55.49 0.63 -23.53 15 2 C 0.01 0.36 4.94 -17.43 -0.09 0.28 15 3 Si 0.90 21.44 29.61 -169.99 -5.03 16.41 15 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 15 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 7 C -0.25 -6.35 7.56 -15.06 -0.11 -6.46 15 8 H 0.08 2.00 6.49 -52.48 -0.34 1.66 15 9 N -0.55 -12.70 2.38 -163.38 -0.39 -13.09 15 10 C 0.11 2.32 5.25 -4.04 -0.02 2.30 15 11 C 0.41 8.51 3.29 37.16 0.12 8.63 15 12 F -0.18 -4.21 16.99 2.25 0.04 -4.17 15 13 F -0.21 -4.16 17.32 2.25 0.04 -4.12 15 14 F -0.20 -4.04 16.64 2.25 0.04 -4.00 15 15 C 0.14 2.71 3.15 -65.92 -0.21 2.50 15 16 H 0.07 1.27 7.91 -51.93 -0.41 0.86 15 17 C -0.17 -2.96 6.25 -25.20 -0.16 -3.12 15 18 C 0.06 0.99 6.79 37.74 0.26 1.25 15 19 O -0.36 -7.70 10.39 -35.23 -0.37 -8.06 15 20 C 0.05 0.88 6.98 38.21 0.27 1.14 15 21 H 0.26 6.84 8.31 -40.82 -0.34 6.50 15 22 H 0.14 3.43 5.35 -51.93 -0.28 3.15 15 23 H 0.07 1.36 8.02 -51.93 -0.42 0.94 15 24 H 0.06 0.93 8.14 -51.93 -0.42 0.51 15 25 H 0.08 1.56 8.04 -51.93 -0.42 1.14 15 26 H 0.07 1.28 8.10 -51.93 -0.42 0.86 15 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 15 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 15 29 H 0.10 2.06 8.14 -51.93 -0.42 1.64 15 LS Contribution 254.97 15.07 3.84 3.84 Total: -1.00 -27.27 254.97 -4.25 -31.52 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -3.11 Total: -1.32 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: 0.06 Total: 6.52 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.24 Total: -36.62 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -0.37 Total: -8.06 kcal Atomic # 9 Polarization: -12.41 SS G_CDS: 0.11 Total: -12.29 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -27.27 -4.25 -31.52 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261152627.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.161 kcal (2) G-P(sol) polarization free energy of solvation -27.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds