Wall clock time and date at job start Sun Mar 29 2020 22:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99964 * 2 1 4 4 H 1.48497 * 109.47147 * 240.00171 * 3 2 1 5 5 H 1.48506 * 109.46918 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47369 * 119.99834 * 3 2 1 7 7 C 1.38807 * 120.00213 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00081 * 158.51126 * 7 2 1 9 9 N 1.36934 * 120.00212 * 338.51772 * 7 2 1 10 10 C 1.46510 * 119.99855 * 325.41405 * 9 7 2 11 11 C 1.53002 * 109.46951 * 265.57338 * 10 9 7 12 12 F 1.39895 * 109.47193 * 59.99760 * 11 10 9 13 13 F 1.39900 * 109.46785 * 179.97438 * 11 10 9 14 14 F 1.39898 * 109.46820 * 299.99721 * 11 10 9 15 15 C 1.46499 * 120.00661 * 145.41308 * 9 7 2 16 16 H 1.08991 * 110.80939 * 183.62689 * 15 9 7 17 17 C 1.54814 * 110.90392 * 59.99987 * 15 9 7 18 18 C 1.54106 * 104.18526 * 262.68506 * 17 15 9 19 19 O 1.43735 * 107.42279 * 1.95630 * 18 17 15 20 20 C 1.44577 * 106.87034 * 333.67125 * 19 18 17 21 21 H 0.97003 * 120.00103 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46646 * 25.57117 * 10 9 7 23 23 H 1.09001 * 109.46783 * 145.57134 * 10 9 7 24 24 H 1.09000 * 110.49064 * 144.00804 * 17 15 9 25 25 H 1.08995 * 110.49166 * 21.36078 * 17 15 9 26 26 H 1.08997 * 109.87755 * 121.46119 * 18 17 15 27 27 H 1.09003 * 109.87612 * 242.45041 * 18 17 15 28 28 H 1.09000 * 110.50443 * 281.38211 * 20 19 18 29 29 H 1.08995 * 110.77572 * 158.51345 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0340 -1.2347 -0.3421 9 7 1.3970 -2.3466 0.4353 10 6 0.4242 -2.2862 1.5291 11 6 1.1286 -2.5804 2.8551 12 9 2.1324 -1.6301 3.0707 13 9 0.1997 -2.5222 3.8995 14 9 1.6979 -3.8574 2.8073 15 6 1.7137 -3.6315 -0.1931 16 1 1.0972 -4.4283 0.2228 17 6 3.2186 -3.9629 -0.0450 18 6 3.8379 -3.5125 -1.3823 19 8 2.7834 -2.9402 -2.1738 20 6 1.5491 -3.5499 -1.7321 21 1 -0.4850 0.8401 0.0004 22 1 -0.0194 -1.2913 1.5662 23 1 -0.3579 -3.0267 1.3610 24 1 3.3611 -5.0338 0.0999 25 1 3.6527 -3.4039 0.7839 26 1 4.6113 -2.7663 -1.1999 27 1 4.2662 -4.3708 -1.9001 28 1 1.4412 -4.5466 -2.1600 29 1 0.6945 -2.9264 -1.9943 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261152627.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:04 Heat of formation + Delta-G solvation = -196.827744 kcal Electronic energy + Delta-G solvation = -18763.290128 eV Core-core repulsion = 15271.436760 eV Total energy + Delta-G solvation = -3491.853368 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.087 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.71649 -48.27723 -48.19346 -40.25182 -36.96177 -33.60001 -31.90337 -29.99407 -28.93032 -25.81079 -23.77882 -23.02422 -21.54734 -19.42656 -19.16596 -18.75788 -17.75595 -17.18892 -16.81065 -16.39649 -15.76493 -15.32210 -15.18309 -14.96855 -14.73013 -14.68111 -14.44906 -14.43834 -14.20712 -13.45257 -13.12490 -12.92901 -12.64415 -12.33080 -12.21963 -12.16090 -12.07025 -11.72188 -11.65416 -10.62604 -10.32497 -8.77400 -7.95076 -5.48760 1.46223 1.49012 1.54390 2.17258 2.48526 3.04578 3.22794 3.32792 3.47278 3.51855 3.85235 4.03713 4.29018 4.33078 4.48518 4.59155 4.71315 4.86903 4.97619 5.04518 5.12312 5.30038 5.41135 5.76973 6.21092 6.39775 7.02848 7.68266 8.15749 9.07734 Molecular weight = 239.09amu Principal moments of inertia in cm(-1) A = 0.017286 B = 0.016041 C = 0.010068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.464495 B = 1745.082473 C = 2780.390266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.030 4.030 3 Si 0.945 3.055 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.238 4.238 8 H 0.064 0.936 9 N -0.567 5.567 10 C 0.107 3.893 11 C 0.417 3.583 12 F -0.198 7.198 13 F -0.202 7.202 14 F -0.194 7.194 15 C 0.129 3.871 16 H 0.094 0.906 17 C -0.157 4.157 18 C 0.053 3.947 19 O -0.396 6.396 20 C 0.049 3.951 21 H 0.255 0.745 22 H 0.114 0.886 23 H 0.091 0.909 24 H 0.096 0.904 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.293 -8.357 1.846 8.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.227 4.227 3 Si 0.774 3.226 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.368 4.368 8 H 0.082 0.918 9 N -0.283 5.283 10 C -0.024 4.024 11 C 0.359 3.641 12 F -0.179 7.179 13 F -0.184 7.184 14 F -0.175 7.175 15 C 0.022 3.978 16 H 0.112 0.888 17 C -0.196 4.196 18 C -0.024 4.024 19 O -0.315 6.315 20 C -0.029 4.029 21 H 0.064 0.936 22 H 0.132 0.868 23 H 0.109 0.891 24 H 0.114 0.886 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.097 0.903 29 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.237 -8.063 1.648 8.528 hybrid contribution 0.463 0.985 0.536 1.213 sum 2.699 -7.079 2.184 7.884 Atomic orbital electron populations 1.69957 1.06170 1.26395 1.53485 1.25604 0.95702 1.01022 1.00346 0.85686 0.78292 0.80599 0.78052 1.20567 1.21589 1.20930 1.19032 0.94602 0.85523 1.37668 0.91821 1.43836 1.47634 1.03814 1.33061 1.22243 0.91763 1.06871 0.81545 1.23072 0.78028 0.73239 0.89743 1.93094 1.63667 1.65414 1.95757 1.93076 1.66292 1.96222 1.62789 1.93061 1.86329 1.41310 1.96827 1.22327 0.95090 0.87677 0.92718 0.88768 1.23280 0.96905 1.01807 0.97649 1.23066 0.90707 0.97616 0.90993 1.88884 1.16826 1.66091 1.59709 1.23873 0.87231 0.97109 0.94689 0.93558 0.86849 0.89129 0.88587 0.92421 0.91851 0.90953 0.90334 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.93 11.32 21.65 0.25 -49.68 15 2 C -0.03 -1.59 4.94 84.86 0.42 -1.17 15 3 Si 0.94 44.35 29.61 68.60 2.03 46.38 15 4 H -0.28 -13.05 7.11 99.48 0.71 -12.34 15 5 H -0.29 -13.51 7.11 99.48 0.71 -12.80 15 6 H -0.28 -13.27 7.11 99.48 0.71 -12.56 15 7 C -0.24 -12.19 7.56 84.03 0.64 -11.55 15 8 H 0.06 3.38 6.49 -2.91 -0.02 3.36 15 9 N -0.57 -25.41 2.38 -670.82 -1.60 -27.00 15 10 C 0.11 4.56 5.25 86.38 0.45 5.01 15 11 C 0.42 16.75 3.29 71.98 0.24 16.99 15 12 F -0.20 -8.91 16.99 44.97 0.76 -8.14 15 13 F -0.20 -7.67 17.32 44.97 0.78 -6.89 15 14 F -0.19 -7.19 16.64 44.97 0.75 -6.45 15 15 C 0.13 4.72 3.15 46.29 0.15 4.87 15 16 H 0.09 3.01 7.91 -2.39 -0.02 2.99 15 17 C -0.16 -5.15 6.25 31.59 0.20 -4.95 15 18 C 0.05 1.76 6.79 72.36 0.49 2.25 15 19 O -0.40 -16.18 10.39 -148.98 -1.55 -17.73 15 20 C 0.05 1.80 6.98 72.66 0.51 2.30 15 21 H 0.26 13.64 8.31 -92.71 -0.77 12.87 15 22 H 0.11 5.59 5.35 -2.39 -0.01 5.58 15 23 H 0.09 3.42 8.02 -2.39 -0.02 3.40 15 24 H 0.10 2.48 8.14 -2.39 -0.02 2.46 15 25 H 0.06 2.15 8.04 -2.39 -0.02 2.13 15 26 H 0.06 2.18 8.10 -2.39 -0.02 2.16 15 27 H 0.07 1.93 8.14 -2.39 -0.02 1.91 15 28 H 0.08 2.29 8.14 -2.39 -0.02 2.27 15 29 H 0.07 2.81 8.14 -2.39 -0.02 2.80 15 Total: -1.00 -57.21 254.97 5.67 -51.54 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: 1.16 Total: 4.22 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: 3.09 Total: 13.75 kcal Atomic # 7 Polarization: -75.33 SS G_CDS: -1.35 Total: -76.69 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: -1.55 Total: -17.73 kcal Atomic # 9 Polarization: -23.77 SS G_CDS: 2.29 Total: -21.48 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -57.21 5.67 -51.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261152627.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.289 kcal (2) G-P(sol) polarization free energy of solvation -57.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds