Wall clock time and date at job start Sun Mar 29 2020 22:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86807 * 119.99580 * 2 1 4 4 H 1.48495 * 109.46789 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46830 * 299.99751 * 3 2 1 6 6 H 1.48496 * 109.47082 * 59.99899 * 3 2 1 7 7 C 1.38805 * 120.00270 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99848 * 157.81157 * 7 2 1 9 9 N 1.36943 * 119.99997 * 337.80398 * 7 2 1 10 10 C 1.46498 * 119.99731 * 325.95447 * 9 7 2 11 11 C 1.53003 * 109.47256 * 266.25454 * 10 9 7 12 12 F 1.39898 * 109.47324 * 59.99904 * 11 10 9 13 13 F 1.39900 * 109.47117 * 180.02562 * 11 10 9 14 14 F 1.39905 * 109.46864 * 300.00074 * 11 10 9 15 15 C 1.46494 * 119.99931 * 145.95316 * 9 7 2 16 16 H 1.09004 * 110.45551 * 177.39332 * 15 9 7 17 17 C 1.54506 * 110.51237 * 300.00216 * 15 9 7 18 18 C 1.54483 * 104.06395 * 118.64633 * 17 15 9 19 19 O 1.44420 * 104.80195 * 23.97797 * 18 17 15 20 20 C 1.44428 * 105.27826 * 319.49000 * 19 18 17 21 21 H 0.97002 * 120.00560 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47353 * 26.25504 * 10 9 7 23 23 H 1.09006 * 109.46769 * 146.25716 * 10 9 7 24 24 H 1.08998 * 110.51286 * 237.28906 * 17 15 9 25 25 H 1.09002 * 110.51110 * 359.86376 * 17 15 9 26 26 H 1.08996 * 110.37440 * 142.80972 * 18 17 15 27 27 H 1.09002 * 110.36807 * 265.03538 * 18 17 15 28 28 H 1.09002 * 110.36798 * 281.68253 * 20 19 18 29 29 H 1.08997 * 110.37562 * 159.34402 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0303 -1.2365 -0.3538 9 7 1.4017 -2.3443 0.4470 10 6 0.4319 -2.2764 1.5429 11 6 1.1442 -2.5389 2.8713 12 9 2.1372 -1.5732 3.0669 13 9 0.2179 -2.4746 3.9178 14 9 1.7286 -3.8098 2.8438 15 6 1.7205 -3.6341 -0.1702 16 1 1.1860 -4.4397 0.3332 17 6 1.3757 -3.6136 -1.6761 18 6 2.7316 -3.8577 -2.3751 19 8 3.5359 -4.5434 -1.3908 20 6 3.2440 -3.8881 -0.1373 21 1 -0.4851 0.8400 -0.0004 22 1 -0.0234 -1.2863 1.5643 23 1 -0.3418 -3.0290 1.3905 24 1 0.6726 -4.4107 -1.9178 25 1 0.9658 -2.6446 -1.9610 26 1 2.5966 -4.4833 -3.2573 27 1 3.1927 -2.9091 -2.6503 28 1 3.7846 -2.9442 -0.0677 29 1 3.5025 -4.5370 0.6994 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261152628.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:05 Heat of formation + Delta-G solvation = -183.281155 kcal Electronic energy + Delta-G solvation = -18608.710188 eV Core-core repulsion = 15117.444244 eV Total energy + Delta-G solvation = -3491.265944 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.087 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.05383 -46.65708 -46.48318 -38.76113 -35.51821 -31.84607 -30.31791 -28.54013 -27.02463 -24.18852 -22.12198 -21.76034 -19.85177 -17.72444 -17.50248 -17.02792 -16.04378 -15.70787 -15.31686 -14.54055 -14.37682 -13.75134 -13.55078 -13.32921 -13.22797 -13.06935 -12.77492 -12.73412 -12.30739 -11.90883 -11.50867 -11.29666 -11.00691 -10.81107 -10.63796 -10.53873 -10.36297 -10.12765 -9.87671 -9.10222 -8.75786 -7.01705 -6.11602 -3.66872 3.24748 3.35193 3.38398 3.85371 4.23435 4.59372 4.85238 5.02356 5.17126 5.20049 5.48808 5.50626 5.64262 5.83062 5.99106 6.09756 6.27306 6.31927 6.45047 6.56320 6.64756 6.94235 7.06525 7.39138 7.61436 8.14340 8.80453 9.45010 9.96056 10.92147 Molecular weight = 239.09amu Principal moments of inertia in cm(-1) A = 0.016958 B = 0.015003 C = 0.009492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.720491 B = 1865.799303 C = 2949.257561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.018 3.982 3 Si 0.903 3.097 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.284 1.284 7 C -0.266 4.266 8 H 0.073 0.927 9 N -0.558 5.558 10 C 0.107 3.893 11 C 0.408 3.592 12 F -0.183 7.183 13 F -0.209 7.209 14 F -0.203 7.203 15 C 0.141 3.859 16 H 0.068 0.932 17 C -0.163 4.163 18 C 0.050 3.950 19 O -0.391 6.391 20 C 0.032 3.968 21 H 0.261 0.739 22 H 0.140 0.860 23 H 0.070 0.930 24 H 0.057 0.943 25 H 0.096 0.904 26 H 0.076 0.924 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.766 -4.726 0.773 4.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.183 4.183 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.214 1.214 6 H -0.210 1.210 7 C -0.394 4.394 8 H 0.091 0.909 9 N -0.275 5.275 10 C -0.024 4.024 11 C 0.351 3.649 12 F -0.165 7.165 13 F -0.191 7.191 14 F -0.185 7.185 15 C 0.033 3.967 16 H 0.086 0.914 17 C -0.203 4.203 18 C -0.027 4.027 19 O -0.309 6.309 20 C -0.046 4.046 21 H 0.071 0.929 22 H 0.157 0.843 23 H 0.088 0.912 24 H 0.075 0.925 25 H 0.115 0.885 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.828 -4.769 0.705 4.892 hybrid contribution 0.368 0.992 0.408 1.134 sum 1.196 -3.777 1.113 4.115 Atomic orbital electron populations 1.69895 1.05634 1.26543 1.50696 1.25148 0.95113 0.99123 0.98884 0.86231 0.79979 0.83156 0.77514 1.19755 1.21412 1.21006 1.19046 0.95177 0.84956 1.40265 0.90946 1.43734 1.48160 1.02913 1.32650 1.22351 0.91460 1.07617 0.81020 1.23380 0.78496 0.73049 0.90023 1.93117 1.63752 1.63685 1.95945 1.93063 1.66770 1.96209 1.63060 1.93052 1.85942 1.42579 1.96953 1.21888 0.93937 0.88436 0.92425 0.91370 1.23294 0.96704 1.03153 0.97111 1.23278 0.91069 0.96434 0.91881 1.88995 1.66336 1.57340 1.18275 1.23895 0.97389 0.97561 0.85779 0.92905 0.84323 0.91205 0.92454 0.88522 0.90599 0.92546 0.91130 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.03 11.32 55.49 0.63 -22.40 15 2 C 0.02 0.46 4.94 -17.43 -0.09 0.37 15 3 Si 0.90 20.46 29.61 -169.99 -5.03 15.42 15 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 15 5 H -0.29 -6.53 7.11 56.52 0.40 -6.12 15 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 7 C -0.27 -6.55 7.82 -15.06 -0.12 -6.67 15 8 H 0.07 1.82 6.52 -52.49 -0.34 1.47 15 9 N -0.56 -12.56 2.36 -163.89 -0.39 -12.95 15 10 C 0.11 2.31 5.23 -4.04 -0.02 2.29 15 11 C 0.41 8.48 3.29 37.16 0.12 8.60 15 12 F -0.18 -4.15 16.96 2.25 0.04 -4.11 15 13 F -0.21 -4.13 17.32 2.25 0.04 -4.09 15 14 F -0.20 -4.07 16.60 2.25 0.04 -4.03 15 15 C 0.14 2.80 3.07 -66.37 -0.20 2.60 15 16 H 0.07 1.29 7.85 -51.93 -0.41 0.89 15 17 C -0.16 -3.04 6.56 -25.16 -0.17 -3.21 15 18 C 0.05 0.87 7.63 37.94 0.29 1.16 15 19 O -0.39 -7.50 11.65 -35.23 -0.41 -7.91 15 20 C 0.03 0.62 7.22 37.93 0.27 0.89 15 21 H 0.26 6.57 8.31 -40.82 -0.34 6.23 15 22 H 0.14 3.36 5.32 -51.93 -0.28 3.08 15 23 H 0.07 1.38 8.04 -51.93 -0.42 0.96 15 24 H 0.06 0.96 8.14 -51.93 -0.42 0.53 15 25 H 0.10 2.06 7.47 -51.93 -0.39 1.67 15 26 H 0.08 1.12 8.14 -51.93 -0.42 0.70 15 27 H 0.06 1.00 8.14 -51.93 -0.42 0.58 15 28 H 0.07 1.48 6.19 -51.93 -0.32 1.16 15 29 H 0.08 1.45 8.14 -51.93 -0.42 1.03 15 LS Contribution 255.17 15.07 3.85 3.85 Total: -1.00 -25.76 255.17 -4.13 -29.89 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -2.98 Total: 0.29 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 0.09 Total: 6.04 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: 0.24 Total: -35.35 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: -0.41 Total: -7.91 kcal Atomic # 9 Polarization: -12.34 SS G_CDS: 0.11 Total: -12.23 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.03 Total: 15.42 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -25.76 -4.13 -29.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261152628.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.389 kcal (2) G-P(sol) polarization free energy of solvation -25.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds