Wall clock time and date at job start Sun Mar 29 2020 22:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86807 * 119.99580 * 2 1 4 4 H 1.48495 * 109.46789 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46830 * 299.99751 * 3 2 1 6 6 H 1.48496 * 109.47082 * 59.99899 * 3 2 1 7 7 C 1.38805 * 120.00270 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99848 * 157.81157 * 7 2 1 9 9 N 1.36943 * 119.99997 * 337.80398 * 7 2 1 10 10 C 1.46498 * 119.99731 * 325.95447 * 9 7 2 11 11 C 1.53003 * 109.47256 * 266.25454 * 10 9 7 12 12 F 1.39898 * 109.47324 * 59.99904 * 11 10 9 13 13 F 1.39900 * 109.47117 * 180.02562 * 11 10 9 14 14 F 1.39905 * 109.46864 * 300.00074 * 11 10 9 15 15 C 1.46494 * 119.99931 * 145.95316 * 9 7 2 16 16 H 1.09004 * 110.45551 * 177.39332 * 15 9 7 17 17 C 1.54506 * 110.51237 * 300.00216 * 15 9 7 18 18 C 1.54483 * 104.06395 * 118.64633 * 17 15 9 19 19 O 1.44420 * 104.80195 * 23.97797 * 18 17 15 20 20 C 1.44428 * 105.27826 * 319.49000 * 19 18 17 21 21 H 0.97002 * 120.00560 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47353 * 26.25504 * 10 9 7 23 23 H 1.09006 * 109.46769 * 146.25716 * 10 9 7 24 24 H 1.08998 * 110.51286 * 237.28906 * 17 15 9 25 25 H 1.09002 * 110.51110 * 359.86376 * 17 15 9 26 26 H 1.08996 * 110.37440 * 142.80972 * 18 17 15 27 27 H 1.09002 * 110.36807 * 265.03538 * 18 17 15 28 28 H 1.09002 * 110.36798 * 281.68253 * 20 19 18 29 29 H 1.08997 * 110.37562 * 159.34402 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0303 -1.2365 -0.3538 9 7 1.4017 -2.3443 0.4470 10 6 0.4319 -2.2764 1.5429 11 6 1.1442 -2.5389 2.8713 12 9 2.1372 -1.5732 3.0669 13 9 0.2179 -2.4746 3.9178 14 9 1.7286 -3.8098 2.8438 15 6 1.7205 -3.6341 -0.1702 16 1 1.1860 -4.4397 0.3332 17 6 1.3757 -3.6136 -1.6761 18 6 2.7316 -3.8577 -2.3751 19 8 3.5359 -4.5434 -1.3908 20 6 3.2440 -3.8881 -0.1373 21 1 -0.4851 0.8400 -0.0004 22 1 -0.0234 -1.2863 1.5643 23 1 -0.3418 -3.0290 1.3905 24 1 0.6726 -4.4107 -1.9178 25 1 0.9658 -2.6446 -1.9610 26 1 2.5966 -4.4833 -3.2573 27 1 3.1927 -2.9091 -2.6503 28 1 3.7846 -2.9442 -0.0677 29 1 3.5025 -4.5370 0.6994 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261152628.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:05 Heat of formation + Delta-G solvation = -197.883910 kcal Electronic energy + Delta-G solvation = -18609.343411 eV Core-core repulsion = 15117.444244 eV Total energy + Delta-G solvation = -3491.899167 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.087 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -50.73142 -48.29432 -48.20779 -40.30289 -37.23680 -33.66281 -31.93414 -30.10884 -28.75716 -25.96897 -23.69629 -23.38237 -21.49778 -19.42825 -19.19549 -18.76372 -17.72170 -17.23841 -17.01368 -16.32555 -15.92878 -15.41040 -15.21992 -14.99935 -14.91237 -14.72873 -14.46065 -14.43850 -13.85719 -13.62080 -13.25349 -13.01869 -12.76792 -12.44319 -12.31134 -12.16864 -12.09322 -11.85017 -11.44934 -10.65302 -10.60991 -8.83555 -8.01383 -5.57951 1.43000 1.50443 1.57549 2.15595 2.42773 2.96088 3.09968 3.36031 3.44709 3.49792 3.84943 3.99669 4.18046 4.29723 4.48250 4.54320 4.62832 4.92032 4.92967 5.01144 5.18762 5.22808 5.42088 5.65822 5.90458 6.31092 6.94515 7.60669 8.10025 9.00291 Molecular weight = 239.09amu Principal moments of inertia in cm(-1) A = 0.016958 B = 0.015003 C = 0.009492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.720491 B = 1865.799303 C = 2949.257561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.020 4.020 3 Si 0.948 3.052 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.289 1.289 7 C -0.262 4.262 8 H 0.064 0.936 9 N -0.567 5.567 10 C 0.108 3.892 11 C 0.416 3.584 12 F -0.196 7.196 13 F -0.201 7.201 14 F -0.196 7.196 15 C 0.134 3.866 16 H 0.082 0.918 17 C -0.157 4.157 18 C 0.052 3.948 19 O -0.395 6.395 20 C 0.038 3.962 21 H 0.259 0.741 22 H 0.117 0.883 23 H 0.089 0.911 24 H 0.080 0.920 25 H 0.067 0.933 26 H 0.109 0.891 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.951 -5.698 0.560 5.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.218 4.218 3 Si 0.776 3.224 4 H -0.197 1.197 5 H -0.214 1.214 6 H -0.216 1.216 7 C -0.391 4.391 8 H 0.082 0.918 9 N -0.285 5.285 10 C -0.023 4.023 11 C 0.358 3.642 12 F -0.177 7.177 13 F -0.183 7.183 14 F -0.178 7.178 15 C 0.027 3.973 16 H 0.100 0.900 17 C -0.196 4.196 18 C -0.025 4.025 19 O -0.314 6.314 20 C -0.040 4.040 21 H 0.068 0.932 22 H 0.134 0.866 23 H 0.107 0.893 24 H 0.098 0.902 25 H 0.086 0.914 26 H 0.127 0.873 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.022 -5.756 0.490 5.866 hybrid contribution 0.313 1.231 0.478 1.357 sum 1.334 -4.525 0.968 4.816 Atomic orbital electron populations 1.69970 1.06338 1.26706 1.52021 1.25627 0.95648 1.01052 0.99515 0.85528 0.79092 0.80759 0.77025 1.19662 1.21381 1.21575 1.19071 0.94824 0.85872 1.39364 0.91811 1.43829 1.48167 1.03290 1.33193 1.22254 0.91750 1.07052 0.81286 1.23091 0.78200 0.73041 0.89852 1.93095 1.64309 1.64320 1.96002 1.93078 1.66417 1.96181 1.62633 1.93063 1.85823 1.41952 1.96932 1.22067 0.94383 0.87551 0.93293 0.89976 1.23194 0.97778 1.02369 0.96254 1.23381 0.89877 0.96823 0.92415 1.88995 1.66721 1.57319 1.18349 1.23771 0.96733 0.96965 0.86508 0.93181 0.86557 0.89281 0.90172 0.91413 0.87323 0.93397 0.93123 0.89181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.25 11.32 21.65 0.25 -47.01 15 2 C -0.02 -1.01 4.94 84.86 0.42 -0.59 15 3 Si 0.95 41.98 29.61 68.60 2.03 44.01 15 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 15 5 H -0.29 -12.62 7.11 99.48 0.71 -11.91 15 6 H -0.29 -12.97 7.11 99.48 0.71 -12.27 15 7 C -0.26 -12.84 7.82 84.03 0.66 -12.18 15 8 H 0.06 3.20 6.52 -2.91 -0.02 3.19 15 9 N -0.57 -25.04 2.36 -672.41 -1.58 -26.63 15 10 C 0.11 4.55 5.23 86.38 0.45 5.00 15 11 C 0.42 16.69 3.29 71.98 0.24 16.93 15 12 F -0.20 -8.68 16.96 44.97 0.76 -7.91 15 13 F -0.20 -7.62 17.32 44.97 0.78 -6.84 15 14 F -0.20 -7.44 16.60 44.97 0.75 -6.69 15 15 C 0.13 5.09 3.07 46.01 0.14 5.23 15 16 H 0.08 2.89 7.85 -2.38 -0.02 2.88 15 17 C -0.16 -5.54 6.56 31.61 0.21 -5.33 15 18 C 0.05 1.68 7.63 72.49 0.55 2.23 15 19 O -0.40 -14.27 11.65 -148.98 -1.74 -16.01 15 20 C 0.04 1.43 7.22 72.49 0.52 1.96 15 21 H 0.26 13.10 8.31 -92.71 -0.77 12.33 15 22 H 0.12 5.60 5.32 -2.39 -0.01 5.59 15 23 H 0.09 3.37 8.04 -2.38 -0.02 3.36 15 24 H 0.08 2.45 8.14 -2.39 -0.02 2.43 15 25 H 0.07 2.83 7.47 -2.39 -0.02 2.81 15 26 H 0.11 2.84 8.14 -2.39 -0.02 2.82 15 27 H 0.05 1.64 8.14 -2.39 -0.02 1.62 15 28 H 0.05 2.09 6.19 -2.39 -0.01 2.08 15 29 H 0.09 3.13 8.14 -2.39 -0.02 3.11 15 Total: -1.00 -52.58 255.17 5.60 -46.98 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: 1.17 Total: 6.85 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: 3.19 Total: 13.25 kcal Atomic # 7 Polarization: -72.29 SS G_CDS: -1.34 Total: -73.63 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -1.74 Total: -16.01 kcal Atomic # 9 Polarization: -23.73 SS G_CDS: 2.29 Total: -21.44 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -52.58 5.60 -46.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261152628.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.904 kcal (2) G-P(sol) polarization free energy of solvation -52.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds