Wall clock time and date at job start Sun Mar 29 2020 21:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.33230 * 119.99680 * 2 1 4 4 H 1.07997 * 119.99947 * 155.40111 * 3 2 1 5 5 C 1.46791 * 119.99930 * 335.40655 * 3 2 1 6 6 N 1.29308 * 120.00259 * 54.34193 * 5 3 2 7 7 Si 1.86806 * 119.99693 * 234.34051 * 5 3 2 8 8 H 1.48506 * 109.47061 * 0.02562 * 7 5 3 9 9 H 1.48497 * 109.46932 * 119.99894 * 7 5 3 10 10 H 1.48490 * 109.47073 * 240.00041 * 7 5 3 11 11 C 1.34776 * 120.00050 * 180.02562 * 2 1 3 12 12 O 1.21640 * 119.99506 * 180.72544 * 11 2 1 13 13 C 1.46410 * 120.00452 * 0.72947 * 11 2 1 14 14 C 1.38143 * 126.27637 * 156.00754 * 13 11 2 15 15 C 1.39719 * 106.96260 * 180.27778 * 14 13 11 16 16 C 1.35561 * 107.85591 * 359.73871 * 15 14 13 17 17 N 1.48023 * 125.50394 * 180.02562 * 16 15 14 18 18 O 1.31697 * 120.00156 * 180.02562 * 17 16 15 19 19 O 1.31701 * 119.99369 * 359.97438 * 17 16 15 20 20 N 1.34959 * 108.99970 * 0.02562 * 16 15 14 21 21 H 0.97004 * 125.63548 * 179.97438 * 20 16 15 22 22 H 1.09004 * 109.47131 * 246.70851 * 1 2 3 23 23 H 1.08996 * 109.47294 * 6.71514 * 1 2 3 24 24 H 1.09006 * 109.46804 * 126.71721 * 1 2 3 25 25 H 0.97003 * 119.99953 * 179.97438 * 6 5 3 26 26 H 1.07998 * 126.51268 * 0.02562 * 14 13 11 27 27 H 1.08000 * 126.06711 * 179.72036 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1311 1.1538 0.0000 4 1 3.1376 1.1963 0.3893 5 6 1.4969 2.3674 -0.5291 6 7 0.3500 2.7500 -0.0706 7 14 2.3469 3.3590 -1.8647 8 1 3.6381 2.7139 -2.2142 9 1 1.4794 3.4134 -3.0687 10 1 2.5987 4.7374 -1.3733 11 6 2.1389 -1.1672 -0.0005 12 8 3.3552 -1.1671 0.0128 13 6 1.4070 -2.4351 -0.0172 14 6 1.8846 -3.6486 -0.4731 15 6 0.8556 -4.5794 -0.3088 16 6 -0.2047 -3.9347 0.2369 17 7 -1.5057 -4.5540 0.5761 18 8 -2.4654 -3.8228 1.1041 19 8 -1.7037 -5.8361 0.3489 20 7 0.1172 -2.6371 0.4211 21 1 -0.4650 -1.9581 0.7965 22 1 -0.3633 -0.4064 0.9439 23 1 -0.3634 1.0206 -0.1202 24 1 -0.3633 -0.6145 -0.8238 25 1 -0.0689 3.5522 -0.4200 26 1 2.8653 -3.8403 -0.8828 27 1 0.8975 -5.6263 -0.5704 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263813012.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:47 Heat of formation + Delta-G solvation = 68.465904 kcal Electronic energy + Delta-G solvation = -16657.757726 eV Core-core repulsion = 13615.724751 eV Total energy + Delta-G solvation = -3042.032975 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.59330 -38.65695 -37.87906 -35.29921 -34.02307 -33.08267 -31.23566 -30.09463 -27.10202 -26.34607 -24.62559 -21.74119 -20.83726 -20.13349 -18.65793 -17.66855 -17.39713 -16.60494 -15.90196 -15.45384 -14.83148 -14.64918 -14.42606 -13.63829 -13.38921 -12.89343 -12.83892 -12.42269 -12.24219 -12.01696 -11.24078 -11.00956 -10.97424 -10.81812 -10.60081 -10.40511 -9.37948 -9.26073 -8.90842 -8.69193 -8.44109 -7.60930 -3.99918 -0.34388 1.24623 1.73587 2.57384 2.69110 2.88226 2.97341 3.13691 3.55924 3.67050 4.15179 4.40816 4.95587 5.15822 5.20647 5.58045 5.67120 5.81117 5.86385 6.12705 6.19958 6.41130 6.71173 6.71673 7.15692 7.28303 7.50596 7.76064 8.52067 8.74231 9.33693 9.62199 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.037763 B = 0.006583 C = 0.005852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.280149 B = 4252.262733 C = 4783.616249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.372 5.372 3 C -0.353 4.353 4 H 0.127 0.873 5 C 0.085 3.915 6 N -0.742 5.742 7 Si 0.902 3.098 8 H -0.247 1.247 9 H -0.267 1.267 10 H -0.271 1.271 11 C 0.423 3.577 12 O -0.580 6.580 13 C 0.117 3.883 14 C -0.166 4.166 15 C -0.072 4.072 16 C 0.069 3.931 17 N 0.032 4.968 18 O -0.242 6.242 19 O -0.210 6.210 20 N -0.534 5.534 21 H 0.430 0.570 22 H 0.041 0.959 23 H 0.138 0.862 24 H 0.046 0.954 25 H 0.296 0.704 26 H 0.167 0.833 27 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.067 -1.925 -2.479 3.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.084 5.084 3 C -0.482 4.482 4 H 0.144 0.856 5 C -0.141 4.141 6 N -0.368 5.368 7 Si 0.723 3.277 8 H -0.170 1.170 9 H -0.192 1.192 10 H -0.196 1.196 11 C 0.219 3.781 12 O -0.469 6.469 13 C -0.006 4.006 14 C -0.191 4.191 15 C -0.101 4.101 16 C -0.132 4.132 17 N 0.482 4.518 18 O -0.414 6.414 19 O -0.386 6.386 20 N -0.143 5.143 21 H 0.276 0.724 22 H 0.059 0.941 23 H 0.156 0.844 24 H 0.065 0.935 25 H 0.109 0.891 26 H 0.185 0.815 27 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.533 -1.573 -2.429 2.943 hybrid contribution -0.876 0.593 -0.114 1.064 sum -1.409 -0.980 -2.543 3.068 Atomic orbital electron populations 1.23013 0.82749 1.08470 0.98209 1.42667 1.05084 1.05883 1.54749 1.20517 1.01467 0.83971 1.42292 0.85578 1.27422 0.94016 0.96991 0.95664 1.69016 1.16974 1.20227 1.30570 0.86348 0.82221 0.78460 0.80720 1.17031 1.19220 1.19601 1.16181 0.87042 0.80598 0.94303 1.90682 1.11358 1.84323 1.60529 1.21875 0.81600 0.97951 0.99147 1.21315 1.00585 0.89592 1.07598 1.20837 0.89833 1.00904 0.98523 1.19570 0.85933 0.87146 1.20574 1.49329 1.01587 1.02503 0.98360 1.96253 1.35628 1.60789 1.48714 1.96238 1.89031 0.91666 1.61631 1.42539 1.14336 1.07691 1.49765 0.72440 0.94077 0.84418 0.93511 0.89051 0.81515 0.81798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 8.59 59.85 0.51 0.88 15 2 N -0.37 -8.33 2.93 -122.22 -0.36 -8.69 15 3 C -0.35 -8.33 9.35 -13.49 -0.13 -8.45 15 4 H 0.13 3.20 7.57 -52.49 -0.40 2.80 15 5 C 0.09 1.78 5.09 -15.16 -0.08 1.70 15 6 N -0.74 -15.00 11.03 56.00 0.62 -14.38 15 7 Si 0.90 16.13 29.72 -169.99 -5.05 11.08 15 8 H -0.25 -4.72 7.11 56.52 0.40 -4.31 15 9 H -0.27 -4.69 7.11 56.52 0.40 -4.28 15 10 H -0.27 -4.70 7.11 56.52 0.40 -4.30 15 11 C 0.42 9.65 7.54 -12.97 -0.10 9.55 15 12 O -0.58 -15.09 16.63 5.24 0.09 -15.00 15 13 C 0.12 2.24 6.46 -81.97 -0.53 1.71 15 14 C -0.17 -2.77 10.75 -39.06 -0.42 -3.19 15 15 C -0.07 -1.12 10.49 -39.98 -0.42 -1.54 15 16 C 0.07 1.22 8.11 -144.52 -1.17 0.05 15 17 N 0.03 0.61 4.98 32.92 0.16 0.78 15 18 O -0.24 -4.91 19.96 -31.57 -0.63 -5.54 15 19 O -0.21 -4.07 19.73 -31.57 -0.62 -4.69 15 20 N -0.53 -9.46 5.11 -6.59 -0.03 -9.50 15 21 H 0.43 7.23 5.46 -40.82 -0.22 7.01 15 22 H 0.04 0.71 6.12 -51.93 -0.32 0.40 15 23 H 0.14 2.73 4.49 -51.93 -0.23 2.49 15 24 H 0.05 0.82 7.39 -51.93 -0.38 0.44 15 25 H 0.30 5.27 8.26 -40.82 -0.34 4.93 15 26 H 0.17 2.49 8.06 -52.49 -0.42 2.07 15 27 H 0.16 2.07 8.06 -52.49 -0.42 1.64 15 LS Contribution 253.21 15.07 3.82 3.82 Total: -1.00 -26.65 253.21 -5.87 -32.53 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -1.53 Total: 8.89 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -2.33 Total: 0.71 kcal Atomic # 7 Polarization: -32.18 SS G_CDS: 0.39 Total: -31.79 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -1.17 Total: -25.23 kcal Atomic # 14 Polarization: 16.13 SS G_CDS: -5.05 Total: 11.08 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -26.65 -5.87 -32.53 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263813012.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.992 kcal (2) G-P(sol) polarization free energy of solvation -26.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds