Wall clock time and date at job start Sun Mar 29 2020 21:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.33230 * 119.99680 * 2 1 4 4 H 1.07997 * 119.99947 * 155.40111 * 3 2 1 5 5 C 1.46791 * 119.99930 * 335.40655 * 3 2 1 6 6 N 1.29308 * 120.00259 * 54.34193 * 5 3 2 7 7 Si 1.86806 * 119.99693 * 234.34051 * 5 3 2 8 8 H 1.48506 * 109.47061 * 0.02562 * 7 5 3 9 9 H 1.48497 * 109.46932 * 119.99894 * 7 5 3 10 10 H 1.48490 * 109.47073 * 240.00041 * 7 5 3 11 11 C 1.34776 * 120.00050 * 180.02562 * 2 1 3 12 12 O 1.21640 * 119.99506 * 180.72544 * 11 2 1 13 13 C 1.46410 * 120.00452 * 0.72947 * 11 2 1 14 14 C 1.38143 * 126.27637 * 156.00754 * 13 11 2 15 15 C 1.39719 * 106.96260 * 180.27778 * 14 13 11 16 16 C 1.35561 * 107.85591 * 359.73871 * 15 14 13 17 17 N 1.48023 * 125.50394 * 180.02562 * 16 15 14 18 18 O 1.31697 * 120.00156 * 180.02562 * 17 16 15 19 19 O 1.31701 * 119.99369 * 359.97438 * 17 16 15 20 20 N 1.34959 * 108.99970 * 0.02562 * 16 15 14 21 21 H 0.97004 * 125.63548 * 179.97438 * 20 16 15 22 22 H 1.09004 * 109.47131 * 246.70851 * 1 2 3 23 23 H 1.08996 * 109.47294 * 6.71514 * 1 2 3 24 24 H 1.09006 * 109.46804 * 126.71721 * 1 2 3 25 25 H 0.97003 * 119.99953 * 179.97438 * 6 5 3 26 26 H 1.07998 * 126.51268 * 0.02562 * 14 13 11 27 27 H 1.08000 * 126.06711 * 179.72036 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1311 1.1538 0.0000 4 1 3.1376 1.1963 0.3893 5 6 1.4969 2.3674 -0.5291 6 7 0.3500 2.7500 -0.0706 7 14 2.3469 3.3590 -1.8647 8 1 3.6381 2.7139 -2.2142 9 1 1.4794 3.4134 -3.0687 10 1 2.5987 4.7374 -1.3733 11 6 2.1389 -1.1672 -0.0005 12 8 3.3552 -1.1671 0.0128 13 6 1.4070 -2.4351 -0.0172 14 6 1.8846 -3.6486 -0.4731 15 6 0.8556 -4.5794 -0.3088 16 6 -0.2047 -3.9347 0.2369 17 7 -1.5057 -4.5540 0.5761 18 8 -2.4654 -3.8228 1.1041 19 8 -1.7037 -5.8361 0.3489 20 7 0.1172 -2.6371 0.4211 21 1 -0.4650 -1.9581 0.7965 22 1 -0.3633 -0.4064 0.9439 23 1 -0.3634 1.0206 -0.1202 24 1 -0.3633 -0.6145 -0.8238 25 1 -0.0689 3.5522 -0.4200 26 1 2.8653 -3.8403 -0.8828 27 1 0.8975 -5.6263 -0.5704 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263813012.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:46 Heat of formation + Delta-G solvation = 53.112477 kcal Electronic energy + Delta-G solvation = -16658.423501 eV Core-core repulsion = 13615.724751 eV Total energy + Delta-G solvation = -3042.698750 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.07166 -40.29269 -39.45046 -37.00685 -35.58717 -34.70920 -32.66840 -31.61570 -28.67276 -27.93631 -26.19741 -23.26894 -22.25876 -21.62375 -20.21164 -19.31557 -18.94544 -18.21865 -17.42456 -17.04888 -16.44742 -16.25381 -15.88174 -15.12497 -14.90308 -14.31974 -14.22777 -14.00447 -13.80232 -13.65440 -12.68537 -12.58426 -12.52884 -12.37570 -12.10784 -11.97487 -10.95324 -10.70335 -10.62239 -10.34822 -9.95359 -9.18464 -5.78310 -1.84152 -0.27407 0.26030 1.13417 1.27526 1.41198 1.51953 1.66022 2.05857 2.15746 2.51626 2.79797 3.50844 3.69486 3.83527 4.09221 4.16307 4.32185 4.48910 4.66142 4.80188 4.98648 5.14581 5.36796 5.64197 5.75107 5.86623 6.06305 6.87302 7.07889 7.80187 7.93053 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.037763 B = 0.006583 C = 0.005852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.280149 B = 4252.262733 C = 4783.616249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.377 5.377 3 C -0.422 4.422 4 H 0.089 0.911 5 C 0.072 3.928 6 N -0.752 5.752 7 Si 0.964 3.036 8 H -0.272 1.272 9 H -0.253 1.253 10 H -0.256 1.256 11 C 0.408 3.592 12 O -0.626 6.626 13 C 0.107 3.893 14 C -0.153 4.153 15 C -0.044 4.044 16 C 0.065 3.935 17 N 0.030 4.970 18 O -0.268 6.268 19 O -0.183 6.183 20 N -0.531 5.531 21 H 0.431 0.569 22 H 0.054 0.946 23 H 0.132 0.868 24 H 0.060 0.940 25 H 0.311 0.689 26 H 0.186 0.814 27 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.193 -3.461 -3.485 5.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.088 5.088 3 C -0.550 4.550 4 H 0.106 0.894 5 C -0.154 4.154 6 N -0.377 5.377 7 Si 0.783 3.217 8 H -0.197 1.197 9 H -0.177 1.177 10 H -0.181 1.181 11 C 0.204 3.796 12 O -0.519 6.519 13 C -0.016 4.016 14 C -0.178 4.178 15 C -0.073 4.073 16 C -0.136 4.136 17 N 0.484 4.516 18 O -0.435 6.435 19 O -0.368 6.368 20 N -0.140 5.140 21 H 0.278 0.722 22 H 0.072 0.928 23 H 0.150 0.850 24 H 0.079 0.921 25 H 0.125 0.875 26 H 0.204 0.796 27 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -1.719 -2.956 -3.399 4.822 hybrid contribution -0.666 0.716 0.244 1.008 sum -2.385 -2.241 -3.155 4.546 Atomic orbital electron populations 1.23021 0.81072 1.08514 0.99424 1.42694 1.06120 1.05504 1.54447 1.20168 1.01046 0.85777 1.47985 0.89364 1.27858 0.94716 0.96849 0.95987 1.68930 1.17336 1.20873 1.30512 0.85462 0.80191 0.77469 0.78549 1.19674 1.17717 1.18076 1.16617 0.86911 0.81699 0.94388 1.90621 1.13343 1.85384 1.62516 1.21546 0.82166 0.97445 1.00401 1.21658 1.01551 0.88491 1.06126 1.21310 0.87797 1.02324 0.95842 1.19873 0.85802 0.87220 1.20698 1.49499 1.01925 1.02489 0.97676 1.96282 1.36260 1.60856 1.50083 1.96233 1.88951 0.91616 1.60017 1.42492 1.13855 1.08095 1.49530 0.72221 0.92768 0.85036 0.92120 0.87475 0.79645 0.77813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.86 8.59 127.77 1.10 1.96 15 2 N -0.38 -17.56 2.93 -658.84 -1.93 -19.48 15 3 C -0.42 -21.16 9.35 86.72 0.81 -20.35 15 4 H 0.09 4.94 7.57 -2.91 -0.02 4.92 15 5 C 0.07 3.09 5.09 87.30 0.44 3.54 15 6 N -0.75 -30.43 11.03 23.26 0.26 -30.17 15 7 Si 0.96 33.58 29.72 68.60 2.04 35.62 15 8 H -0.27 -10.54 7.11 99.48 0.71 -9.84 15 9 H -0.25 -8.18 7.11 99.48 0.71 -7.47 15 10 H -0.26 -8.28 7.11 99.48 0.71 -7.57 15 11 C 0.41 19.16 7.54 86.37 0.65 19.81 15 12 O -0.63 -34.13 16.63 -4.16 -0.07 -34.20 15 13 C 0.11 3.99 6.46 40.33 0.26 4.25 15 14 C -0.15 -4.66 10.75 22.61 0.24 -4.42 15 15 C -0.04 -1.16 10.49 22.01 0.23 -0.93 15 16 C 0.07 2.09 8.11 128.11 1.04 3.13 15 17 N 0.03 1.07 4.98 -49.77 -0.25 0.82 15 18 O -0.27 -10.30 19.96 3.52 0.07 -10.23 15 19 O -0.18 -6.30 19.73 3.51 0.07 -6.23 15 20 N -0.53 -17.88 5.11 -174.76 -0.89 -18.78 15 21 H 0.43 14.05 5.46 -92.71 -0.51 13.54 15 22 H 0.05 1.89 6.12 -2.38 -0.01 1.87 15 23 H 0.13 5.25 4.49 -2.39 -0.01 5.24 15 24 H 0.06 2.10 7.39 -2.38 -0.02 2.08 15 25 H 0.31 10.79 8.26 -92.71 -0.77 10.02 15 26 H 0.19 4.99 8.06 -2.91 -0.02 4.96 15 27 H 0.20 3.83 8.06 -2.91 -0.02 3.81 15 Total: -1.00 -58.91 253.21 4.81 -54.10 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: 0.74 Total: 21.56 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: 4.78 Total: 7.00 kcal Atomic # 7 Polarization: -64.80 SS G_CDS: -2.81 Total: -67.61 kcal Atomic # 8 Polarization: -50.74 SS G_CDS: 0.07 Total: -50.67 kcal Atomic # 14 Polarization: 33.58 SS G_CDS: 2.04 Total: 35.62 kcal Total: -58.91 4.81 -54.10 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263813012.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.211 kcal (2) G-P(sol) polarization free energy of solvation -58.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds