Wall clock time and date at job start Sun Mar 29 2020 22:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47320 * 2 1 4 4 C 1.50703 * 109.47037 * 240.00381 * 2 1 3 5 5 O 1.21288 * 119.99666 * 240.00276 * 4 2 1 6 6 N 1.34776 * 120.00137 * 59.99941 * 4 2 1 7 7 C 1.46495 * 119.99797 * 0.02562 * 6 4 2 8 8 C 1.37096 * 120.00151 * 179.97438 * 6 4 2 9 9 H 1.08001 * 119.99647 * 326.49186 * 8 6 4 10 10 C 1.38941 * 120.00036 * 146.21017 * 8 6 4 11 11 N 1.31412 * 120.00362 * 158.99458 * 10 8 6 12 12 Si 1.86797 * 120.00293 * 338.99812 * 10 8 6 13 13 H 1.48500 * 109.47175 * 85.54822 * 12 10 8 14 14 H 1.48501 * 109.47630 * 205.55054 * 12 10 8 15 15 H 1.48506 * 109.46971 * 325.55076 * 12 10 8 16 16 C 1.50705 * 109.47133 * 120.00484 * 2 1 3 17 17 C 1.33384 * 125.20099 * 239.71946 * 16 2 1 18 18 C 1.38426 * 114.91819 * 179.85847 * 17 16 2 19 19 C 1.33388 * 114.92058 * 0.42608 * 18 17 16 20 20 S 1.75880 * 109.59621 * 359.77585 * 19 18 17 21 21 H 1.09001 * 109.47051 * 59.99665 * 1 2 3 22 22 H 1.08996 * 109.47009 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46642 * 299.99960 * 1 2 3 24 24 H 1.08999 * 109.47752 * 270.08415 * 7 6 4 25 25 H 1.09005 * 109.47286 * 30.08530 * 7 6 4 26 26 H 1.09004 * 109.47440 * 150.08124 * 7 6 4 27 27 H 0.96991 * 120.00664 * 180.02562 * 11 10 8 28 28 H 1.08002 * 122.53928 * 0.02562 * 17 16 2 29 29 H 1.08005 * 122.53957 * 180.19725 * 18 17 16 30 30 H 1.07999 * 125.19983 * 179.74472 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7296 -1.6965 -1.1193 6 7 1.7068 -0.2498 -2.4546 7 6 0.8650 0.9416 -2.5889 8 6 2.1642 -0.8957 -3.5741 9 1 3.1336 -1.3717 -3.5646 10 6 1.3781 -0.9430 -4.7187 11 7 1.9324 -1.1754 -5.8874 12 14 -0.4667 -0.6762 -4.5967 13 1 -0.7604 0.7788 -4.6413 14 1 -1.1410 -1.3524 -5.7339 15 1 -0.9652 -1.2428 -3.3177 16 6 2.0324 -0.7105 1.2304 17 6 2.8068 -0.1663 2.1702 18 6 3.1409 -1.0132 3.2131 19 6 2.6450 -2.2476 3.1156 20 16 1.6933 -2.3864 1.6430 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3632 0.5138 0.8900 24 1 -0.1832 0.6443 -2.6206 25 1 1.0300 1.6010 -1.7368 26 1 1.1218 1.4661 -3.5093 27 1 1.3838 -1.2081 -6.6865 28 1 3.1453 0.8582 2.1226 29 1 3.7593 -0.6993 4.0410 30 1 2.8040 -3.0407 3.8312 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265610246.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:54 Heat of formation + Delta-G solvation = 15.601150 kcal Electronic energy + Delta-G solvation = -15093.514478 eV Core-core repulsion = 12595.482329 eV Total energy + Delta-G solvation = -2498.032149 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.21422 -37.33105 -34.85339 -33.51453 -31.86262 -28.37578 -26.49000 -25.40681 -24.07007 -22.29702 -19.17936 -19.01807 -17.10875 -16.52962 -16.12461 -15.25755 -15.10289 -14.55364 -13.93352 -13.45265 -12.88575 -12.64934 -12.53684 -12.34144 -12.25120 -12.01259 -11.88370 -11.50100 -11.15135 -10.91534 -10.70360 -10.48833 -10.25543 -9.93560 -9.07220 -8.66213 -8.24983 -7.97789 -7.79744 -6.39859 -3.96005 1.34437 2.02953 2.43568 3.03196 3.03814 3.21127 3.24343 3.67645 4.14812 4.42871 4.91550 4.97912 5.28771 5.37690 5.41686 5.54673 5.71485 5.79571 5.88464 5.91194 5.96060 6.08860 6.23694 6.36539 6.44383 6.59392 6.78115 7.52069 8.25062 8.49101 8.94331 9.31208 9.73608 10.72723 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.043339 B = 0.007422 C = 0.007179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.910863 B = 3771.582750 C = 3899.210405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.044 4.044 3 H 0.101 0.899 4 C 0.464 3.536 5 O -0.551 6.551 6 N -0.467 5.467 7 C 0.060 3.940 8 C -0.316 4.316 9 H 0.108 0.892 10 C 0.060 3.940 11 N -0.866 5.866 12 Si 0.877 3.123 13 H -0.274 1.274 14 H -0.288 1.288 15 H -0.268 1.268 16 C -0.132 4.132 17 C -0.156 4.156 18 C -0.135 4.135 19 C -0.239 4.239 20 S 0.144 5.856 21 H 0.076 0.924 22 H 0.059 0.941 23 H 0.063 0.937 24 H 0.042 0.958 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.274 0.726 28 H 0.134 0.866 29 H 0.132 0.868 30 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.241 4.384 14.086 15.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.067 4.067 3 H 0.119 0.881 4 C 0.251 3.749 5 O -0.432 6.432 6 N -0.189 5.189 7 C -0.084 4.084 8 C -0.443 4.443 9 H 0.125 0.875 10 C -0.146 4.146 11 N -0.502 5.502 12 Si 0.704 3.296 13 H -0.200 1.200 14 H -0.215 1.215 15 H -0.193 1.193 16 C -0.251 4.251 17 C -0.186 4.186 18 C -0.166 4.166 19 C -0.375 4.375 20 S 0.409 5.591 21 H 0.095 0.905 22 H 0.079 0.921 23 H 0.082 0.918 24 H 0.060 0.940 25 H 0.081 0.919 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.152 0.848 29 H 0.150 0.850 30 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -4.723 2.664 13.233 14.301 hybrid contribution -0.132 1.316 0.511 1.417 sum -4.855 3.979 13.743 15.109 Atomic orbital electron populations 1.22091 0.92892 1.03132 1.03016 1.19849 0.96927 0.99508 0.90450 0.88086 1.20007 0.85249 0.85805 0.83817 1.90594 1.39879 1.27024 1.85678 1.43631 1.46437 1.23498 1.05300 1.22175 0.94450 0.89150 1.02604 1.19105 1.03478 1.34442 0.87230 0.87473 1.25315 0.98368 0.96100 0.94807 1.69741 1.36210 1.46350 0.97931 0.87045 0.86183 0.78286 0.78087 1.19951 1.21508 1.19258 1.24038 1.04211 0.97239 0.99595 1.19987 1.01760 1.01521 0.95334 1.19985 1.03075 0.93290 1.00243 1.25641 1.07809 1.01347 1.02743 1.84342 1.49403 1.10209 1.15137 0.90541 0.92142 0.91788 0.94038 0.91933 0.90574 0.91565 0.84845 0.85016 0.82533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 8.75 37.16 0.33 -2.01 16 2 C -0.04 -0.77 2.30 -92.92 -0.21 -0.99 16 3 H 0.10 1.53 7.34 -51.93 -0.38 1.15 16 4 C 0.46 10.83 7.00 -10.98 -0.08 10.75 16 5 O -0.55 -14.94 15.07 5.55 0.08 -14.86 16 6 N -0.47 -11.28 2.65 -122.20 -0.32 -11.60 16 7 C 0.06 1.15 6.56 59.84 0.39 1.54 16 8 C -0.32 -8.99 9.42 -14.94 -0.14 -9.13 16 9 H 0.11 3.45 7.83 -52.49 -0.41 3.04 16 10 C 0.06 1.65 5.23 -17.47 -0.09 1.56 16 11 N -0.87 -25.14 13.96 55.50 0.77 -24.36 16 12 Si 0.88 20.41 24.34 -169.99 -4.14 16.27 16 13 H -0.27 -5.80 6.80 56.52 0.38 -5.41 16 14 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.27 -6.21 7.08 56.52 0.40 -5.81 16 16 C -0.13 -2.29 4.60 -36.00 -0.17 -2.45 16 17 C -0.16 -2.36 10.01 -41.21 -0.41 -2.78 16 18 C -0.13 -1.85 10.18 -41.21 -0.42 -2.27 16 19 C -0.24 -3.37 11.23 29.04 0.33 -3.05 16 20 S 0.14 2.44 22.18 -107.50 -2.38 0.05 16 21 H 0.08 1.13 4.53 -51.93 -0.24 0.90 16 22 H 0.06 0.99 8.00 -51.93 -0.42 0.57 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.04 0.78 4.11 -51.93 -0.21 0.56 16 25 H 0.06 0.95 6.02 -51.93 -0.31 0.64 16 26 H 0.08 1.49 7.30 -51.93 -0.38 1.11 16 27 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.13 1.73 8.06 -52.49 -0.42 1.30 16 29 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 30 H 0.16 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 260.22 15.07 3.92 3.92 Total: -1.00 -32.24 260.22 -5.74 -37.98 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -3.19 Total: 1.43 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -0.48 Total: -8.82 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.45 Total: -35.97 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: 0.08 Total: -14.86 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.14 Total: 16.27 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -2.38 Total: 0.05 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -32.24 -5.74 -37.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265610246.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.578 kcal (2) G-P(sol) polarization free energy of solvation -32.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds