Wall clock time and date at job start Sun Mar 29 2020 22:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47320 * 2 1 4 4 C 1.50703 * 109.47037 * 240.00381 * 2 1 3 5 5 O 1.21288 * 119.99666 * 240.00276 * 4 2 1 6 6 N 1.34776 * 120.00137 * 59.99941 * 4 2 1 7 7 C 1.46495 * 119.99797 * 0.02562 * 6 4 2 8 8 C 1.37096 * 120.00151 * 179.97438 * 6 4 2 9 9 H 1.08001 * 119.99647 * 326.49186 * 8 6 4 10 10 C 1.38941 * 120.00036 * 146.21017 * 8 6 4 11 11 N 1.31412 * 120.00362 * 158.99458 * 10 8 6 12 12 Si 1.86797 * 120.00293 * 338.99812 * 10 8 6 13 13 H 1.48500 * 109.47175 * 85.54822 * 12 10 8 14 14 H 1.48501 * 109.47630 * 205.55054 * 12 10 8 15 15 H 1.48506 * 109.46971 * 325.55076 * 12 10 8 16 16 C 1.50705 * 109.47133 * 120.00484 * 2 1 3 17 17 C 1.33384 * 125.20099 * 239.71946 * 16 2 1 18 18 C 1.38426 * 114.91819 * 179.85847 * 17 16 2 19 19 C 1.33388 * 114.92058 * 0.42608 * 18 17 16 20 20 S 1.75880 * 109.59621 * 359.77585 * 19 18 17 21 21 H 1.09001 * 109.47051 * 59.99665 * 1 2 3 22 22 H 1.08996 * 109.47009 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46642 * 299.99960 * 1 2 3 24 24 H 1.08999 * 109.47752 * 270.08415 * 7 6 4 25 25 H 1.09005 * 109.47286 * 30.08530 * 7 6 4 26 26 H 1.09004 * 109.47440 * 150.08124 * 7 6 4 27 27 H 0.96991 * 120.00664 * 180.02562 * 11 10 8 28 28 H 1.08002 * 122.53928 * 0.02562 * 17 16 2 29 29 H 1.08005 * 122.53957 * 180.19725 * 18 17 16 30 30 H 1.07999 * 125.19983 * 179.74472 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7296 -1.6965 -1.1193 6 7 1.7068 -0.2498 -2.4546 7 6 0.8650 0.9416 -2.5889 8 6 2.1642 -0.8957 -3.5741 9 1 3.1336 -1.3717 -3.5646 10 6 1.3781 -0.9430 -4.7187 11 7 1.9324 -1.1754 -5.8874 12 14 -0.4667 -0.6762 -4.5967 13 1 -0.7604 0.7788 -4.6413 14 1 -1.1410 -1.3524 -5.7339 15 1 -0.9652 -1.2428 -3.3177 16 6 2.0324 -0.7105 1.2304 17 6 2.8068 -0.1663 2.1702 18 6 3.1409 -1.0132 3.2131 19 6 2.6450 -2.2476 3.1156 20 16 1.6933 -2.3864 1.6430 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3632 0.5138 0.8900 24 1 -0.1832 0.6443 -2.6206 25 1 1.0300 1.6010 -1.7368 26 1 1.1218 1.4661 -3.5093 27 1 1.3838 -1.2081 -6.6865 28 1 3.1453 0.8582 2.1226 29 1 3.7593 -0.6993 4.0410 30 1 2.8040 -3.0407 3.8312 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265610246.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:54 Heat of formation + Delta-G solvation = -6.552429 kcal Electronic energy + Delta-G solvation = -15094.475129 eV Core-core repulsion = 12595.482329 eV Total energy + Delta-G solvation = -2498.992800 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.91132 -38.56122 -36.75126 -35.00780 -33.81949 -29.60203 -28.11733 -27.25357 -25.35173 -23.70281 -20.84114 -20.20378 -19.11074 -17.91849 -17.80870 -16.97377 -16.35501 -16.25919 -15.49589 -14.94292 -14.62532 -14.31279 -14.00539 -13.78163 -13.53580 -13.43216 -13.07128 -12.96759 -12.66928 -12.45428 -12.29752 -12.13279 -11.86051 -11.46109 -11.04422 -10.39339 -9.76997 -9.48684 -9.25078 -8.52201 -6.14005 0.17264 0.84537 1.20395 1.27884 1.32243 1.43833 1.90389 1.92114 2.18103 2.75080 2.97060 3.62818 3.90574 4.14466 4.21895 4.29608 4.43140 4.45127 4.70306 4.73614 4.76520 4.86973 4.90170 5.18782 5.28335 5.44024 5.51413 5.69461 6.01582 6.53338 6.91893 7.28682 7.84422 8.65655 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.043339 B = 0.007422 C = 0.007179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.910863 B = 3771.582750 C = 3899.210405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.032 4.032 3 H 0.134 0.866 4 C 0.456 3.544 5 O -0.603 6.603 6 N -0.480 5.480 7 C 0.052 3.948 8 C -0.336 4.336 9 H 0.043 0.957 10 C 0.012 3.988 11 N -0.914 5.914 12 Si 0.947 3.053 13 H -0.228 1.228 14 H -0.291 1.291 15 H -0.266 1.266 16 C -0.162 4.162 17 C -0.146 4.146 18 C -0.138 4.138 19 C -0.225 4.225 20 S 0.071 5.929 21 H 0.084 0.916 22 H 0.040 0.960 23 H 0.100 0.900 24 H 0.056 0.944 25 H 0.110 0.890 26 H 0.071 0.929 27 H 0.280 0.720 28 H 0.160 0.840 29 H 0.168 0.832 30 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.015 6.834 16.454 18.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.055 4.055 3 H 0.151 0.849 4 C 0.245 3.755 5 O -0.486 6.486 6 N -0.202 5.202 7 C -0.090 4.090 8 C -0.464 4.464 9 H 0.061 0.939 10 C -0.190 4.190 11 N -0.552 5.552 12 Si 0.770 3.230 13 H -0.151 1.151 14 H -0.217 1.217 15 H -0.190 1.190 16 C -0.280 4.280 17 C -0.176 4.176 18 C -0.168 4.168 19 C -0.361 4.361 20 S 0.336 5.664 21 H 0.103 0.897 22 H 0.059 0.941 23 H 0.118 0.882 24 H 0.074 0.926 25 H 0.128 0.872 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.178 0.822 29 H 0.185 0.815 30 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -6.504 5.158 15.611 17.681 hybrid contribution 0.595 0.502 -0.136 0.790 sum -5.909 5.660 15.475 17.505 Atomic orbital electron populations 1.22112 0.90874 1.02608 1.05151 1.19815 0.98478 1.00016 0.87177 0.84890 1.21154 0.83626 0.85431 0.85248 1.90558 1.41852 1.29467 1.86741 1.43750 1.47193 1.24922 1.04348 1.22443 0.94055 0.87810 1.04657 1.18692 1.01969 1.35971 0.89738 0.93890 1.26131 1.03757 0.95455 0.93670 1.69863 1.38479 1.47889 0.98959 0.85946 0.78396 0.80900 0.77794 1.15075 1.21739 1.19043 1.24100 1.06510 0.96859 1.00526 1.20429 0.99681 1.02840 0.94657 1.20405 1.02895 0.92746 1.00801 1.25967 1.06345 1.02475 1.01264 1.84579 1.51598 1.12101 1.18130 0.89728 0.94100 0.88167 0.92613 0.87191 0.91069 0.91037 0.82217 0.81460 0.79782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.07 8.75 71.98 0.63 -3.44 16 2 C -0.03 -1.05 2.30 -12.28 -0.03 -1.08 16 3 H 0.13 3.46 7.34 -2.39 -0.02 3.44 16 4 C 0.46 21.39 7.00 87.66 0.61 22.01 16 5 O -0.60 -34.17 15.07 -3.05 -0.05 -34.22 16 6 N -0.48 -23.23 2.65 -658.90 -1.75 -24.98 16 7 C 0.05 1.85 6.56 127.77 0.84 2.69 16 8 C -0.34 -20.04 9.42 84.04 0.79 -19.25 16 9 H 0.04 3.03 7.83 -2.91 -0.02 3.01 16 10 C 0.01 0.66 5.23 84.92 0.44 1.11 16 11 N -0.91 -55.04 13.96 21.66 0.30 -54.74 16 12 Si 0.95 41.43 24.34 68.60 1.67 43.10 16 13 H -0.23 -8.31 6.80 99.48 0.68 -7.63 16 14 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 15 H -0.27 -11.47 7.08 99.48 0.70 -10.77 16 16 C -0.16 -5.30 4.60 24.59 0.11 -5.19 16 17 C -0.15 -3.92 10.01 21.22 0.21 -3.71 16 18 C -0.14 -3.31 10.18 21.22 0.22 -3.09 16 19 C -0.22 -5.82 11.23 66.72 0.75 -5.07 16 20 S 0.07 2.41 22.18 -56.49 -1.25 1.16 16 21 H 0.08 2.13 4.53 -2.39 -0.01 2.12 16 22 H 0.04 1.26 8.00 -2.39 -0.02 1.25 16 23 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.06 1.84 4.11 -2.39 -0.01 1.83 16 25 H 0.11 2.82 6.02 -2.38 -0.01 2.80 16 26 H 0.07 2.59 7.30 -2.38 -0.02 2.58 16 27 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 28 H 0.16 3.39 8.06 -2.91 -0.02 3.36 16 29 H 0.17 2.82 8.06 -2.91 -0.02 2.79 16 30 H 0.18 3.59 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -76.37 260.22 4.62 -71.75 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 1.12 Total: 12.94 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: 4.58 Total: -15.02 kcal Atomic # 7 Polarization: -78.27 SS G_CDS: -1.45 Total: -79.71 kcal Atomic # 8 Polarization: -34.17 SS G_CDS: -0.05 Total: -34.22 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 1.67 Total: 43.10 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -1.25 Total: 1.16 kcal Total: -76.37 4.62 -71.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265610246.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.198 kcal (2) G-P(sol) polarization free energy of solvation -76.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds