Wall clock time and date at job start Sun Mar 29 2020 22:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 S 1.75499 * 124.70682 * 2 1 4 4 C 1.70447 * 92.45531 * 180.02562 * 3 2 1 5 5 C 1.36094 * 110.80664 * 359.69513 * 4 3 2 6 6 C 1.47108 * 123.47125 * 180.25047 * 5 4 3 7 7 O 1.21661 * 119.99985 * 125.72451 * 6 5 4 8 8 N 1.34772 * 120.00253 * 305.72129 * 6 5 4 9 9 C 1.46507 * 119.99898 * 4.00783 * 8 6 5 10 10 C 1.36973 * 120.00256 * 184.00653 * 8 6 5 11 11 H 1.07998 * 120.00163 * 351.50819 * 10 8 6 12 12 C 1.38972 * 120.00118 * 171.51731 * 10 8 6 13 13 N 1.31416 * 120.00146 * 8.19505 * 12 10 8 14 14 Si 1.86798 * 119.99988 * 188.20397 * 12 10 8 15 15 H 1.48499 * 109.47413 * 59.99706 * 14 12 10 16 16 H 1.48496 * 109.47195 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47027 * 299.99592 * 14 12 10 18 18 C 1.32759 * 124.70006 * 179.73775 * 2 1 3 19 19 C 1.50694 * 123.46080 * 359.97438 * 18 2 1 20 20 H 1.09000 * 109.47688 * 270.26073 * 1 2 3 21 21 H 1.09006 * 109.46831 * 30.25934 * 1 2 3 22 22 H 1.08997 * 109.47175 * 150.25611 * 1 2 3 23 23 H 1.07993 * 124.59751 * 179.97438 * 4 3 2 24 24 H 1.09003 * 109.47030 * 356.51260 * 9 8 6 25 25 H 1.08997 * 109.47044 * 116.50830 * 9 8 6 26 26 H 1.08993 * 109.47202 * 236.51041 * 9 8 6 27 27 H 0.97002 * 120.00582 * 180.02562 * 13 12 10 28 28 H 1.08998 * 109.47418 * 270.02250 * 19 18 2 29 29 H 1.09006 * 109.47003 * 30.01912 * 19 18 2 30 30 H 1.08997 * 109.47916 * 150.01723 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5062 1.4427 0.0000 4 6 3.9477 0.5332 -0.0008 5 6 3.6777 -0.8007 0.0058 6 6 4.7194 -1.8394 0.0122 7 8 4.7149 -2.7001 0.8720 8 7 5.6788 -1.8375 -0.9343 9 6 5.7363 -0.7523 -1.9169 10 6 6.6001 -2.8501 -0.9777 11 1 6.6451 -3.5740 -0.1775 12 6 7.4773 -2.9460 -2.0514 13 7 7.5341 -1.9810 -2.9417 14 14 8.5752 -4.4467 -2.2294 15 1 7.7338 -5.6650 -2.3435 16 1 9.4109 -4.3069 -3.4488 17 1 9.4535 -4.5616 -1.0374 18 6 2.2628 -1.0915 0.0050 19 6 1.7022 -2.4902 0.0120 20 1 -0.3634 0.0047 1.0276 21 1 -0.3633 0.8877 -0.5179 22 1 -0.3633 -0.8922 -0.5098 23 1 4.9407 0.9577 -0.0014 24 1 4.8931 -0.0786 -1.7639 25 1 6.6686 -0.2009 -1.7951 26 1 5.6899 -1.1699 -2.9226 27 1 8.1460 -2.0480 -3.6914 28 1 1.5670 -2.8224 1.0413 29 1 0.7408 -2.4989 -0.5018 30 1 2.3930 -3.1612 -0.4986 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271346294.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:04 Heat of formation + Delta-G solvation = 4.607466 kcal Electronic energy + Delta-G solvation = -15005.478849 eV Core-core repulsion = 12506.969979 eV Total energy + Delta-G solvation = -2498.508870 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.01454 -36.83411 -34.63696 -32.32518 -31.18117 -29.10182 -26.54079 -25.25535 -24.67943 -22.67417 -19.39930 -17.93637 -16.97309 -16.60868 -15.85847 -14.70277 -14.34278 -14.03262 -13.88649 -13.62907 -12.86342 -12.55362 -12.47608 -12.20035 -11.89174 -11.66667 -11.42167 -11.38475 -11.12261 -10.98411 -10.66429 -10.49446 -10.43110 -10.16444 -9.02858 -8.48200 -8.15219 -7.88945 -7.75907 -6.28043 -3.82505 1.37290 1.97318 2.36752 2.75126 3.19505 3.21979 3.26454 3.99662 4.15040 4.85001 5.16500 5.19488 5.35559 5.41099 5.59236 5.76897 5.83633 5.92253 6.05139 6.12411 6.34535 6.45470 6.49499 6.71622 6.95267 7.08967 7.42082 7.54738 8.05326 8.46918 9.15296 9.41204 9.98008 10.64294 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.040984 B = 0.007029 C = 0.006446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.032864 B = 3982.525168 C = 4342.537203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.213 4.213 3 S 0.125 5.875 4 C -0.228 4.228 5 C -0.098 4.098 6 C 0.487 3.513 7 O -0.591 6.591 8 N -0.433 5.433 9 C 0.101 3.899 10 C -0.299 4.299 11 H 0.106 0.894 12 C 0.027 3.973 13 N -0.882 5.882 14 Si 0.933 3.067 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.272 1.272 18 C -0.064 4.064 19 C -0.087 4.087 20 H 0.069 0.931 21 H 0.063 0.937 22 H 0.074 0.926 23 H 0.165 0.835 24 H 0.034 0.966 25 H 0.056 0.944 26 H 0.083 0.917 27 H 0.267 0.733 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.141 6.123 0.942 11.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.329 4.329 3 S 0.392 5.608 4 C -0.365 4.365 5 C -0.115 4.115 6 C 0.274 3.726 7 O -0.478 6.478 8 N -0.149 5.149 9 C -0.043 4.043 10 C -0.427 4.427 11 H 0.124 0.876 12 C -0.175 4.175 13 N -0.522 5.522 14 Si 0.760 3.240 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.198 1.198 18 C -0.076 4.076 19 C -0.146 4.146 20 H 0.088 0.912 21 H 0.082 0.918 22 H 0.093 0.907 23 H 0.182 0.818 24 H 0.052 0.948 25 H 0.075 0.925 26 H 0.102 0.898 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.269 7.315 1.141 12.659 hybrid contribution 1.261 -1.941 -0.292 2.333 sum -9.008 5.374 0.848 10.523 Atomic orbital electron populations 1.20258 0.88148 1.02651 1.02234 1.23921 0.99641 0.95601 1.13763 1.82535 0.95143 1.09300 1.73855 1.25381 1.03323 0.97105 1.10703 1.20422 0.94008 0.93387 1.03683 1.17198 0.83309 0.86724 0.85361 1.90614 1.77195 1.40787 1.39163 1.43649 1.24192 1.21491 1.25569 1.22081 0.98672 0.89118 0.94394 1.19799 1.10560 1.05663 1.06658 0.87639 1.25387 0.98234 0.98505 0.95367 1.70175 1.37272 1.30964 1.13834 0.85880 0.79317 0.81078 0.77750 1.19747 1.20830 1.19762 1.19745 0.90929 0.96161 1.00762 1.20420 0.99946 0.91787 1.02439 0.91236 0.91773 0.90735 0.81770 0.94767 0.92537 0.89815 0.92202 0.90982 0.92037 0.90956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.04 36.00 0.36 -0.47 16 2 C -0.21 -3.28 6.44 -36.18 -0.23 -3.51 16 3 S 0.13 1.84 23.00 -107.50 -2.47 -0.63 16 4 C -0.23 -4.20 8.41 29.96 0.25 -3.94 16 5 C -0.10 -2.10 4.95 -104.62 -0.52 -2.62 16 6 C 0.49 12.69 6.64 -12.66 -0.08 12.61 16 7 O -0.59 -17.16 16.49 5.22 0.09 -17.07 16 8 N -0.43 -11.60 3.02 -123.53 -0.37 -11.97 16 9 C 0.10 2.40 8.34 59.85 0.50 2.90 16 10 C -0.30 -8.49 9.54 -14.98 -0.14 -8.63 16 11 H 0.11 3.11 7.19 -52.49 -0.38 2.74 16 12 C 0.03 0.73 5.45 -17.46 -0.10 0.63 16 13 N -0.88 -23.33 9.50 55.50 0.53 -22.80 16 14 Si 0.93 20.86 29.56 -169.99 -5.03 15.83 16 15 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 16 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 17 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 18 C -0.06 -1.18 6.01 -104.06 -0.63 -1.81 16 19 C -0.09 -1.48 9.50 36.00 0.34 -1.13 16 20 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 21 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 22 H 0.07 0.77 6.66 -51.93 -0.35 0.42 16 23 H 0.16 2.92 7.64 -52.49 -0.40 2.51 16 24 H 0.03 0.72 4.52 -51.93 -0.23 0.48 16 25 H 0.06 1.38 7.55 -51.93 -0.39 0.99 16 26 H 0.08 2.12 6.49 -51.93 -0.34 1.78 16 27 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 28 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.06 0.83 6.64 -51.93 -0.34 0.48 16 30 H 0.07 1.40 7.69 -51.93 -0.40 1.01 16 LS Contribution 265.32 15.07 4.00 4.00 Total: -1.00 -30.94 265.32 -6.74 -37.68 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -3.24 Total: 0.94 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -0.24 Total: -5.97 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.15 Total: -34.77 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: 0.09 Total: -17.07 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.83 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -2.47 Total: -0.63 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.94 -6.74 -37.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271346294.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.284 kcal (2) G-P(sol) polarization free energy of solvation -30.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds