Wall clock time and date at job start Sun Mar 29 2020 22:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47043 * 14.52430 * 3 2 1 5 5 C 1.34778 * 120.00155 * 270.00289 * 4 3 2 6 6 O 1.21286 * 119.99745 * 185.94493 * 5 4 3 7 7 C 1.50688 * 120.00065 * 5.94271 * 5 4 3 8 8 S 1.81008 * 109.47175 * 182.63236 * 7 5 4 9 9 C 1.76201 * 99.99794 * 180.02562 * 8 7 5 10 10 H 1.08003 * 120.00135 * 359.97438 * 9 8 7 11 11 C 1.38802 * 119.99752 * 180.02562 * 9 8 7 12 12 N 1.31635 * 120.00042 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00172 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47174 * 59.99399 * 13 11 9 15 15 H 1.48500 * 109.47181 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46790 * 300.00061 * 13 11 9 17 17 C 1.46508 * 119.99926 * 90.00277 * 4 3 2 18 18 C 1.52999 * 117.49824 * 196.39178 * 17 4 3 19 19 C 1.53000 * 117.50004 * 127.72880 * 17 4 3 20 20 H 4.40639 * 5.51402 * 180.02562 * 4 1 2 21 21 H 1.08999 * 109.46979 * 254.53146 * 3 2 1 22 22 H 1.08997 * 109.47058 * 134.52807 * 3 2 1 23 23 H 1.09002 * 109.47185 * 302.63026 * 7 5 4 24 24 H 1.08997 * 109.47627 * 62.63464 * 7 5 4 25 25 H 0.96993 * 119.99846 * 180.02562 * 12 11 9 26 26 H 1.09000 * 115.54615 * 342.06005 * 17 4 3 27 27 H 1.08999 * 117.49985 * 359.97438 * 18 17 4 28 28 H 1.09002 * 117.49484 * 145.01926 * 18 17 4 29 29 H 1.08999 * 117.49683 * 214.98122 * 19 17 4 30 30 H 1.08999 * 117.49877 * 359.97438 * 19 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1350 -1.3362 -0.3464 5 6 3.3599 -2.2439 0.6241 6 8 3.8656 -3.3117 0.3503 7 6 2.9833 -1.9320 2.0495 8 16 3.4782 -3.3060 3.1188 9 6 2.9333 -2.6919 4.6779 10 1 2.4560 -1.7251 4.7406 11 6 3.1185 -3.4503 5.8256 12 7 3.7007 -4.6284 5.7492 13 14 2.5402 -2.7997 7.4784 14 1 1.0740 -2.5684 7.4338 15 1 2.8524 -3.7923 8.5378 16 1 3.2341 -1.5212 7.7773 17 6 3.3793 -1.6864 -1.7478 18 6 3.5125 -3.1712 -2.0921 19 6 4.7491 -2.2689 -2.1020 20 1 -1.0498 -0.0003 -0.0003 21 1 3.0092 0.2749 0.9904 22 1 3.0090 0.7215 -0.7326 23 1 3.4912 -1.0220 2.3687 24 1 1.9048 -1.7891 2.1174 25 1 3.8298 -5.1584 6.5512 26 1 2.9017 -1.0399 -2.4841 27 1 3.4187 -3.8875 -1.2758 28 1 3.1228 -3.5015 -3.0550 29 1 5.1724 -2.0060 -3.0714 30 1 5.4685 -2.3912 -1.2924 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274010697.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:19 Heat of formation + Delta-G solvation = 61.455884 kcal Electronic energy + Delta-G solvation = -14409.196438 eV Core-core repulsion = 11913.152699 eV Total energy + Delta-G solvation = -2496.043738 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.08221 -36.23827 -35.22552 -32.43256 -32.23834 -29.05820 -26.86712 -25.49563 -22.73307 -22.19874 -19.43687 -18.40773 -17.48631 -16.71190 -16.21778 -15.36410 -14.80733 -14.36630 -14.10651 -13.83746 -13.38941 -13.20706 -12.92515 -12.52936 -12.21724 -11.32538 -11.06418 -11.04292 -10.90785 -10.77853 -10.65840 -10.30898 -10.15652 -9.82163 -9.07317 -9.05625 -8.39249 -8.24601 -6.50852 -6.21922 -3.92695 2.38574 2.77925 2.90439 3.11820 3.23428 3.27751 3.32131 3.62186 4.01483 4.20034 4.35335 4.73513 4.98066 5.04887 5.13103 5.19429 5.24475 5.35256 5.57237 5.69368 5.84550 5.85409 5.90327 6.12105 6.19435 6.49937 6.86463 7.44585 7.55983 7.59215 8.34837 8.50535 9.23301 10.85520 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.030288 B = 0.006457 C = 0.005551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.223507 B = 4335.325062 C = 5043.341493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.210 4.210 3 C 0.223 3.777 4 N -0.591 5.591 5 C 0.537 3.463 6 O -0.503 6.503 7 C -0.153 4.153 8 S -0.059 6.059 9 C -0.536 4.536 10 H 0.072 0.928 11 C 0.074 3.926 12 N -0.868 5.868 13 Si 0.919 3.081 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.274 1.274 17 C 0.070 3.930 18 C -0.192 4.192 19 C -0.186 4.186 20 H 0.217 0.783 21 H 0.107 0.893 22 H 0.102 0.898 23 H 0.089 0.911 24 H 0.091 0.909 25 H 0.269 0.731 26 H 0.124 0.876 27 H 0.139 0.861 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.939 9.992 -13.165 16.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.211 4.211 3 C 0.101 3.899 4 N -0.324 5.324 5 C 0.326 3.674 6 O -0.377 6.377 7 C -0.303 4.303 8 S 0.168 5.832 9 C -0.684 4.684 10 H 0.090 0.910 11 C -0.135 4.135 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.199 1.199 17 C -0.034 4.034 18 C -0.230 4.230 19 C -0.224 4.224 20 H 0.234 0.766 21 H 0.125 0.875 22 H 0.120 0.880 23 H 0.107 0.893 24 H 0.109 0.891 25 H 0.079 0.921 26 H 0.141 0.859 27 H 0.157 0.843 28 H 0.104 0.896 29 H 0.110 0.890 30 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.053 8.260 -13.449 15.916 hybrid contribution -1.342 1.752 1.331 2.578 sum -3.395 10.013 -12.117 16.081 Atomic orbital electron populations 1.24962 0.95966 0.98573 1.00670 1.23655 0.95068 1.01646 1.00764 1.18414 0.83611 0.84540 1.03373 1.47380 1.66556 1.13087 1.05331 1.20408 0.77087 0.83295 0.86599 1.90546 1.41334 1.23815 1.82041 1.23617 1.04731 1.07021 0.94925 1.85347 1.78431 1.19946 0.99514 1.22818 1.45727 1.07060 0.92770 0.90996 1.24988 0.94798 0.94638 0.99101 1.70007 1.40044 1.10535 1.29735 0.86226 0.79179 0.78629 0.81483 1.19940 1.20782 1.19912 1.21617 1.00938 0.97972 0.82913 1.23849 1.00857 0.94363 1.03886 1.23265 0.91948 1.04652 1.02578 0.76636 0.87491 0.87971 0.89323 0.89094 0.92115 0.85864 0.84316 0.89559 0.88953 0.88223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.13 19.25 29.55 0.57 -1.56 16 2 C -0.21 -2.65 13.50 -37.12 -0.50 -3.15 16 3 C 0.22 2.58 5.69 -6.83 -0.04 2.54 16 4 N -0.59 -8.69 2.80 -169.42 -0.47 -9.16 16 5 C 0.54 10.27 7.47 -10.99 -0.08 10.18 16 6 O -0.50 -11.04 11.61 5.55 0.06 -10.98 16 7 C -0.15 -3.15 4.91 36.00 0.18 -2.98 16 8 S -0.06 -1.60 20.58 -107.50 -2.21 -3.82 16 9 C -0.54 -15.31 9.50 30.94 0.29 -15.02 16 10 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 11 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 12 N -0.87 -26.21 13.22 55.49 0.73 -25.48 16 13 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 14 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 C 0.07 0.91 6.60 -67.93 -0.45 0.46 16 18 C -0.19 -2.74 9.63 -26.69 -0.26 -3.00 16 19 C -0.19 -2.42 9.88 -26.69 -0.26 -2.69 16 20 H 0.22 1.78 7.80 -54.10 -0.42 1.35 16 21 H 0.11 1.19 6.42 -51.93 -0.33 0.86 16 22 H 0.10 0.85 8.07 -51.93 -0.42 0.43 16 23 H 0.09 1.67 7.09 -51.92 -0.37 1.30 16 24 H 0.09 1.84 7.99 -51.92 -0.42 1.42 16 25 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 26 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.14 2.51 5.22 -52.12 -0.27 2.24 16 28 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.10 1.55 7.60 -51.93 -0.39 1.15 16 LS Contribution 281.75 15.07 4.25 4.25 Total: -1.00 -33.47 281.75 -6.75 -40.22 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -3.44 Total: 1.74 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -0.65 Total: -13.18 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: 0.26 Total: -34.64 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.06 Total: -10.98 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -33.47 -6.75 -40.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274010697.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.671 kcal (2) G-P(sol) polarization free energy of solvation -33.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds